RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 537021.9.peg.74_1
(196 letters)
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia
trachomatis [TaxId: 813]}
Length = 317
Score = 157 bits (398), Expect = 5e-40
Identities = 95/186 (51%), Positives = 133/186 (71%), Gaps = 2/186 (1%)
Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ +KRVN++ KR++N + DVNQL+P+KY WAWE YL+ C N+W+PTE+PM D+ LW
Sbjct: 5 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 64
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 65 KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 123
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188
HTF YI SLGLDE E+FN Y E +I AK ++ ++ T + P+F + +
Sbjct: 124 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 183
Query: 189 SLRFLC 194
+ +
Sbjct: 184 LVGYYI 189
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Length = 334
Score = 116 bits (291), Expect = 1e-27
Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 9/177 (5%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +LN + L P+KY W+ Y A + W E+ + D+ W ++ + ++ER
Sbjct: 50 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNR--MNENERF 107
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I +
Sbjct: 108 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 167
Query: 141 DEG---ELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194
D LFN +P I KA WAL++ Q + + +R + + F
Sbjct: 168 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ----DADALFGERLVAFASIEGVFFSG 220
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli
[TaxId: 562]}
Length = 339
Score = 114 bits (287), Expect = 4e-27
Identities = 30/146 (20%), Positives = 61/146 (41%), Gaps = 3/146 (2%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
V + KY + + W P EV + D +++ L + E+ + NL +
Sbjct: 25 VARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQT 81
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
+S+ + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+
Sbjct: 82 LLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIV 141
Query: 151 EVPSITAKANWALQYTQTLSSPSFHY 176
I +A Y L + ++
Sbjct: 142 TNEQIQKRAEGISSYYDELIEMTSYW 167
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y4 [TaxId: 4932]}
Length = 285
Score = 109 bits (272), Expect = 2e-25
Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 5/147 (3%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
+ P+KY W Y + W E+ + D ++ LTDD++ I L SS+
Sbjct: 27 MFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIGNLLALSISSD 83
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYRE 151
+LV ++ L NPE + + Q E ++S + ++ + D LF
Sbjct: 84 NLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIPLFKEIAN 143
Query: 152 VPSITAKANWALQYTQTLSSPSFHYWN 178
+P + KA + ++ S
Sbjct: 144 LPEVKHKAAFIERWISNDDSLYAERLV 170
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella
typhimurium [TaxId: 90371]}
Length = 283
Score = 102 bits (256), Expect = 2e-23
Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 5/133 (3%)
Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
++ E + +N W+P +VP+ +D+ W++ L+ E+ + R +++
Sbjct: 9 IQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLLDTIQ 65
Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPS 154
++ P L +F EAVH+ ++ I ++L + + E P
Sbjct: 66 NIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEENPP 125
Query: 155 ITAKANWALQYTQ 167
+ KA L +
Sbjct: 126 LQRKAQIILAHYV 138
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 101 bits (252), Expect = 5e-23
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 10/179 (5%)
Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
V+D+ +L + P++Y W+ Y A + W EV + D+ W++ L DE
Sbjct: 1 VEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPDE 57
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
R I L FFA+S+ +V N+V + + E R + Q E +HS + +I +
Sbjct: 58 RHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTY 117
Query: 139 GLDEG---ELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194
D LFN +P + KA+WAL++ + + +R + + F
Sbjct: 118 IKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEAT----YGERVVAFAAVEGIFFSG 172
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2
{Corynebacterium ammoniagenes [TaxId: 1697]}
Length = 284
Score = 100 bits (249), Expect = 1e-22
Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 5/133 (3%)
Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
+ E + N W+P ++P+ +D+ W +T E+L R +++
Sbjct: 11 IPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNK---MTPQEQLATMRVFTGLTLLDTIQ 67
Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPS 154
+++ AF E+VH+ ++ I +L E F E +
Sbjct: 68 GTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENEN 127
Query: 155 ITAKANWALQYTQ 167
+ KA + Y
Sbjct: 128 LQRKAKIIMSYYN 140
>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
Length = 967
Score = 25.0 bits (54), Expect = 4.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 88 FFASSESLVANNIVLAIYRHLSN 110
FFA E ++ ++ A+Y LSN
Sbjct: 613 FFAGGEDILILQLIRAVYDTLSN 635
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 24.8 bits (53), Expect = 5.5
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
R + E + QA E H + Y+I + D
Sbjct: 135 GRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDDFDT 172
>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase)
{Lactobacillus plantarum [TaxId: 1590]}
Length = 266
Score = 24.5 bits (53), Expect = 6.6
Identities = 8/42 (19%), Positives = 11/42 (26%)
Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145
+Y + R L E H F L G +
Sbjct: 158 LYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGII 199
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 24.2 bits (51), Expect = 7.2
Identities = 13/109 (11%), Positives = 22/109 (20%), Gaps = 5/109 (4%)
Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
G E H T A + D + +A
Sbjct: 64 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAP 123
Query: 99 NIVLAIYR-----HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
+ + Q L A E F ++ + L+
Sbjct: 124 PSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLES 172
>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640
{Mycobacterium leprae [TaxId: 1769]}
Length = 297
Score = 24.4 bits (52), Expect = 7.4
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
R F AV Q++I + GLD
Sbjct: 73 VRTNFFDTYFNNAVIDGIRQFVILASGLD 101
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.133 0.411
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 742,321
Number of extensions: 32365
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 14
Length of query: 196
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 115
Effective length of database: 1,295,466
Effective search space: 148978590
Effective search space used: 148978590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.5 bits)