Query 537021.9.peg.75_1 Match_columns 136 No_of_seqs 102 out of 1392 Neff 7.1 Searched_HMMs 33803 Date Mon May 23 06:33:56 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_75.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2rcc_A Ribonucleoside-diphosp 100.0 2.4E-37 7E-42 265.4 12.2 136 1-136 57-195 (197) 2 >1syy_A Ribonucleoside-diphosp 100.0 1.1E-34 3.2E-39 247.9 12.1 134 1-135 213-346 (346) 3 >1r2f_A Protein (ribonucleotid 100.0 3E-34 9E-39 245.0 13.0 133 1-136 50-186 (191) 4 >3dhz_A Ribonucleotide reducta 100.0 2.8E-34 8.4E-39 245.2 12.2 133 1-136 50-186 (191) 5 >1jk0_A RNR Y2, ribonucleoside 100.0 2.2E-34 6.6E-39 245.9 9.7 125 1-134 155-279 (295) 6 >2p1i_A Ribonucleotide reducta 100.0 6.2E-34 1.8E-38 243.0 10.9 125 1-134 51-175 (188) 7 >1jk0_B RNR Y4, ribonucleoside 100.0 2.2E-34 6.4E-39 246.0 7.8 125 1-134 60-184 (199) 8 >1h0o_A Ribonucleoside-diphosp 100.0 8.2E-34 2.4E-38 242.2 10.2 125 1-134 35-159 (172) 9 >1mxr_A Ribonucleotide reducta 100.0 1.4E-32 4.2E-37 234.1 11.8 133 1-133 224-362 (375) 10 >3ee4_A Probable ribonucleosid 99.9 5.9E-27 1.7E-31 197.2 11.2 127 1-132 197-323 (323) 11 >2o1z_A Ribonucleotide reducta 99.9 3.5E-27 1E-31 198.7 8.4 100 1-108 51-150 (151) 12 >3chh_A P-aminobenzoate N-oxyg 99.2 1.4E-11 4.2E-16 96.3 4.0 118 1-127 213-333 (336) 13 >1za0_A Possible acyl-[acyl-ca 91.5 0.36 1.1E-05 28.1 4.9 89 2-97 176-267 (275) 14 >2oc5_A Hypothetical protein; 88.7 1.9 5.6E-05 23.3 9.4 81 5-94 148-230 (244) 15 >2uw1_A Desaturase, plastid de 88.5 1.3 3.7E-05 24.5 5.6 33 3-35 37-69 (166) 16 >3ge3_A Toluene-4-monooxygenas 71.2 7.8 0.00023 19.3 9.1 90 4-96 220-314 (374) 17 >1j30_A 144AA long hypothetica 57.7 14 0.00041 17.6 5.5 63 1-64 39-101 (144) 18 >2oh3_A Rubrerythrin, COG1633: 51.6 15 0.00043 17.5 3.1 103 2-106 37-163 (167) 19 >2fzf_A Hypothetical protein; 51.2 18 0.00052 17.0 3.8 28 3-30 50-77 (90) 20 >3hl1_A Ferritin like protein; 46.4 21 0.00062 16.5 3.9 28 3-30 42-69 (317) 21 >2e0z_A Virus-like particle; b 44.6 7.1 0.00021 19.6 0.6 33 2-34 48-80 (345) 22 >1vlg_A Ferritin; TM1128, stru 43.9 23 0.00067 16.2 4.6 63 1-64 50-116 (176) 23 >1mhy_B Methane monooxygenase 36.4 30 0.00088 15.5 7.1 103 4-109 242-349 (357) 24 >1mty_B Methane monooxygenase 34.5 32 0.00094 15.3 9.6 102 4-108 242-346 (354) 25 >1krq_A Ferritin; H-chain like 32.4 34 0.001 15.1 3.2 61 1-62 36-100 (167) 26 >1otk_A Protein PAAC, phenylac 28.5 40 0.0012 14.7 8.4 84 4-96 39-131 (138) 27 >3b81_A Transcriptional regula 27.1 42 0.0012 14.5 5.6 50 48-97 69-118 (123) 28 >3ibx_A TENA, HP1287, putative 24.9 46 0.0014 14.2 5.7 23 104-126 163-187 (221) 29 >2inp_C Phenol hydroxylase com 24.4 47 0.0014 14.2 9.9 84 3-95 26-109 (112) 30 >1nfv_A Bacterioferritin; 24 s 23.8 48 0.0014 14.1 3.6 29 2-30 43-71 (179) 31 >1vjx_A Putative ferritin-like 21.9 52 0.0015 13.9 4.8 83 2-85 42-140 (157) 32 >2o1u_A Endoplasmin; GRP94, HS 20.1 48 0.0014 14.1 1.4 56 40-95 96-155 (158) No 1 >>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} (A:150-346) Probab=100.00 E-value=2.4e-37 Score=265.41 Aligned_cols=136 Identities=29% Similarity=0.492 Sum_probs=128.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136) |+|+|++|+||+|||++|+.+++.||+++++|+|+.++++++++|++++.+||++|++|++++|+.+++|++++++++|| T Consensus 57 m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~eave~E~~~~~~~~~~~~~g~~~~~~~~yi 136 (197) T 2rcc_A 57 XVSTSTXINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLXKAADLEKDWFRYIIGDKIPGINPEDXETYI 136 (197) T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSTTCCHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH T ss_conf 55389999999744889998899999987540663210014899999999999999999999706765798899999999 Q ss_pred HHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHHCCC-CCCCCCCCCHHHHHHHCCC-CCC Q ss_conf 9999999997697867898-788867999972366-7847673212222443026-689 Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAGL-KWD 136 (136) Q Consensus 81 ~y~an~rL~~lGl~~~f~~-~~nP~~W~~~~~~~~-~~~nFFE~r~~~Y~k~~~~-~~D 136 (136) +|+||+||.+||++|+|++ .+||+|||+..++.. +++||||+|+|+|++|++. .|| T Consensus 137 ky~an~~L~~lG~~~~f~~~~~np~~w~~~~~~~~~~~~nFFe~~~~~Y~~~~~~~~~d 195 (197) T 2rcc_A 137 SFIANKRAVQLGXEKPYPEIKHNPXKWIRAYEDVNSGKSDFFEQKSRQYAKVSADNGFD 195 (197) T ss_dssp HHHHHHHHHHTTCCCSCTTCCSCSCTTC------------------------------- T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCC T ss_conf 99999999977999899987799588999865347653588888768751066778866 No 2 >>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune evasion, replication; 1.70A {Chlamydia trachomatis} (A:) Probab=100.00 E-value=1.1e-34 Score=247.95 Aligned_cols=134 Identities=59% Similarity=1.056 Sum_probs=131.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136) |||+++++++|+|||++|+.|++.+++.++.|.|+.+++++++.+++++.+||++|.+|++++++.+.+|++++.+++|+ T Consensus 213 l~~~~~~i~~I~RDE~~H~~f~~~l~~~~~~e~~~~~~~~~~~~v~~l~~eav~~E~~~~~~~~~~~~~g~~~~~~~~yv 292 (346) T 1syy_A 213 MIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYV 292 (346) T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCBTTBCHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH T ss_conf 32079988888521567888999999998650098752138999999999999999999999667887898999999999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCC Q ss_conf 9999999997697867898788867999972366784767321222244302668 Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAGLKW 135 (136) Q Consensus 81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~~~ 135 (136) +|+||+||.+||++++|++ +||+||++..+++.+++||||+|+|+|+||++++| T Consensus 293 ~~~an~~L~~lG~~~~~~~-~np~~w~~~~~~~~~~~nfFe~~~~~Y~~~~~~~w 346 (346) T 1syy_A 293 QHIADRRLERIGLKPIYHT-KNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346 (346) T ss_dssp HHHHHHHHHHTTCCCSSCC-CCSCTTC---------------------------- T ss_pred HHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCC T ss_conf 9999999997799998999-99647799873867775778897331365576889 No 3 >>1r2f_A Protein (ribonucleotide reductase R2); nucleotide metabolism, oxidoreductase; 2.10A {Salmonella typhimurium} (A:129-319) Probab=100.00 E-value=3e-34 Score=245.01 Aligned_cols=133 Identities=19% Similarity=0.204 Sum_probs=122.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136) |+|+|++|+||+|||++|+.+++.|++++++|+|++++++++++|++++++||++|++|++++|+ .|++++++++|| T Consensus 50 m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~~~~~~~---~g~~~e~~~~yi 126 (191) T 1r2f_A 50 LTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRYTEALYA---ETGWVNDVKAFL 126 (191) T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TTSCHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCHHHHHHHH T ss_conf 84489999999988989999999999999985448888789999999999999999999998743---357699999999 Q ss_pred HHHHHHHHHHCCCCCCCCCC-C--CCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCC-CCC Q ss_conf 99999999976978678987-8--88679999723667847673212222443026-689 Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYT-E--NPFPWMSEVIDLKKEKNFFETRVTEYQQGAGL-KWD 136 (136) Q Consensus 81 ~y~an~rL~~lGl~~~f~~~-~--nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~-~~D 136 (136) +|+||+||.+||++|+|++. + +|++|+...+++.+++||||+|+|+|+||+.. .|| T Consensus 127 ~y~an~rl~~lG~~~~f~~~~~~~~p~~~~~~~~~~~~~~nFFe~r~t~Y~k~~~~~~~d 186 (191) T 1r2f_A 127 CYNANKALMNLGYEALFPPEMADVNPAILAALSPNADENHDFFSGSGSSYVMGKTVETED 186 (191) T ss_dssp HHHHHHHHHHTTCCCCSCTTTSCCCHHHHHHHCC-------------------------- T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCC T ss_conf 999999999779998889766888965899865145745888778755412057788832 No 4 >>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} (A:139-329) Probab=100.00 E-value=2.8e-34 Score=245.21 Aligned_cols=133 Identities=19% Similarity=0.210 Sum_probs=123.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136) |||+|++|+||+|||++|+.+++.|++++++|+|+.+++++.+++++++++||++|++|++++|+ .|++++++++|| T Consensus 50 m~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~~~~~ave~E~~~~~~~~~---~g~~~~~~~~yi 126 (191) T 3dhz_A 50 LTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYD---DLGWTEDVKRFL 126 (191) T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTTCHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHH T ss_conf 86289999999620588999999999999763889889988999999999999999999998864---565499999999 Q ss_pred HHHHHHHHHHCCCCCCCCCC---CCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCC-CCC Q ss_conf 99999999976978678987---888679999723667847673212222443026-689 Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYT---ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAGL-KWD 136 (136) Q Consensus 81 ~y~an~rL~~lGl~~~f~~~---~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~-~~D 136 (136) +|+||+||.+||++|+|++. +||++|+...+++.+++||||+|||+|+||+.. .|| T Consensus 127 ~y~an~~L~~lGl~~~y~~~~~~~~p~~~~~~~~~~~~~~nFFe~r~t~Y~k~~~~~~~d 186 (191) T 3dhz_A 127 RYNANKALNNLGYEGLFPTDETKVSPAILSSLSPNADENHDFFSGSGSSYVIGKAEDTTD 186 (191) T ss_dssp HHHHHHHHHHTTCCCSSCGGGCCCCHHHHHHHC--------------------------- T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 999999999779999899877889837898753024656787747744340022577754 No 5 >>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} (A:1-103,A:228-419) Probab=100.00 E-value=2.2e-34 Score=245.89 Aligned_cols=125 Identities=30% Similarity=0.533 Sum_probs=116.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136) |+|+|++|+||+|||++|+.|++.||+.++++.| .+.+.+++.+||++|.+|++++|+.+++|++++++++|| T Consensus 155 M~Gl~~~I~lI~RDE~lH~~f~~~L~~~l~~e~~-------~e~v~el~~eAvelE~ef~~~~l~~~~lGi~~e~i~qYI 227 (295) T 1jk0_A 155 MPGLTFSNELICRDEGLHTDFACLLFAHLKNKPD-------PAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYV 227 (295) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH T ss_conf 2427999999998999999999999998640321-------889999999999999999998537885799999999999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC Q ss_conf 999999999769786789878886799997236678476732122224430266 Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAGLK 134 (136) Q Consensus 81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~~ 134 (136) +|+||+||.+||++++|++ +||+|||+..++ .+++||||+||++|+||+.+. T Consensus 228 kY~AN~~L~~LG~e~~F~~-~NP~~wme~~~d-~~ktNFFE~rvs~YqK~~~~~ 279 (295) T 1jk0_A 228 EFVADRLLVAFGNKKYYKV-ENPFDFMENISL-AGKTNFFEKRVSDYQKAGVMS 279 (295) T ss_dssp HHHHHHHHHTTTCCCSSCC-CCCCGGGGC------------------------- T ss_pred HHHHHHHHHHCCCCCCCCC-CCCCHHHHHHCC-CCCCCCCCCCHHHHHHCCCCC T ss_conf 9999999997699987999-998258887245-788787678788787624776 No 6 >>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, structural genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii str} (A:162-349) Probab=100.00 E-value=6.2e-34 Score=242.98 Aligned_cols=125 Identities=30% Similarity=0.590 Sum_probs=116.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136) |+|+|++|+||+|||++|+.+++.++++++.+.| .+.+++++.+||++|++|++++|+.+++|++++++++|| T Consensus 51 m~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~e~~-------~~~~~~l~~eav~~E~~~~~~~~~~~~~gi~~~~~~~yi 123 (188) T 2p1i_A 51 LHGLTFSNELISRDEGLHTDFNCLIYSLLENKLP-------ENVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYI 123 (188) T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHHHHTTTSCSTTTTCCHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH T ss_conf 3046999999966677768899899999982498-------999998999999999999999704352120067799999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC Q ss_conf 999999999769786789878886799997236678476732122224430266 Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAGLK 134 (136) Q Consensus 81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~~ 134 (136) +|+||+||.+||++|+|++ +||+|||+.+. ..+++||||+|+|+|+||+... T Consensus 124 ~y~an~~L~~lG~~~~f~~-~nP~~w~~~~~-~~~~~nFFE~~~t~Y~k~~~~~ 175 (188) T 2p1i_A 124 EFVADRLLECLGCSKVFHS-KNPFNWMDLIS-LQGKTNFFEKRVADYQKSGVMA 175 (188) T ss_dssp HHHHHHHHHHTTCCCSSCC-CCSCCC---------------------------- T ss_pred HHHHHHHHHHCCCCCCCCC-CCCCCCHHHCC-CCCCCCCCCCCHHHHHCCCCCC T ss_conf 9999999997799999999-99965055515-6745578877765630366667 No 7 >>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} (B:147-345) Probab=100.00 E-value=2.2e-34 Score=246.00 Aligned_cols=125 Identities=24% Similarity=0.465 Sum_probs=117.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136) |+|+|++|+||+|||++|+.+++.|+++++++.| ++.+++++++||++|++|++++++.+++|++++++++|| T Consensus 60 m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~-------~~~i~~l~~eave~E~~~~~~~~~~~~~g~~~~~~~~yi 132 (199) T 1jk0_B 60 MPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPN-------PKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYI 132 (199) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHHHHTTSCC-----------CTHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH T ss_conf 5107999999874799999999999998612211-------779999999999999999985445453375899999999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC Q ss_conf 999999999769786789878886799997236678476732122224430266 Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAGLK 134 (136) Q Consensus 81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~~ 134 (136) +|+||+||.+||++|+|+. +||+||++.+++ .+++||||+|+|+|+||++.+ T Consensus 133 ~y~an~~L~~lG~~~~f~~-~nP~~~~~~~~~-~~~~nFFe~~~t~Y~k~~~~~ 184 (199) T 1jk0_B 133 EFVADGLLQGFGNEKYYNA-VNPFEFMEDVAT-AGKTTFFEKKVSDYQKASDMS 184 (199) T ss_dssp HHHHHHHHHHTTCCCCC------------------------------------- T ss_pred HHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHC-CCCCCCCCCCHHHHHCCCCCC T ss_conf 9999999997799987899-997579998737-577655677655310244566 No 8 >>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} (A:219-390) Probab=100.00 E-value=8.2e-34 Score=242.19 Aligned_cols=125 Identities=31% Similarity=0.614 Sum_probs=116.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136) |+|+|++|+||+|||++|+.+++.+++.+++|.| .+.+++++++||++|++|++++|+.+++|++++++++|| T Consensus 35 m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~-------~~~~~~l~~eav~~E~~~~~~~~~~~~~g~~~~~~~~yi 107 (172) T 1h0o_A 35 MPGLTFSNELISRDEGLHCDFACLMFKHLVHKPA-------EQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYI 107 (172) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH T ss_conf 1418999999998899999999999998750238-------999999999989999999999668974797999999999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC Q ss_conf 999999999769786789878886799997236678476732122224430266 Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAGLK 134 (136) Q Consensus 81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~~ 134 (136) +|+||+||.+||++++|++ +||+||++.. ...+++||||+|+|+|+||+..+ T Consensus 108 ~y~an~~L~~LG~~~~y~~-~nP~~~~~~~-~~~~~~nFFe~~~t~Y~k~~~~~ 159 (172) T 1h0o_A 108 EFVADRLMLELGFNKIFRV-ENPFDFMENI-SLEGKTNFFEKRVGEYQRMGVMS 159 (172) T ss_dssp HHHHHHHHHHTTCCCSSCC-CCSCGGGC-------------------------- T ss_pred HHHHHHHHHHCCCCCCCCC-CCCHHHHHHC-CCCCCCCCCCCCHHHHHHCCCCC T ss_conf 9999999997799998999-9985789861-25677577656578664356678 No 9 >>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} (A:) Probab=100.00 E-value=1.4e-32 Score=234.06 Aligned_cols=133 Identities=27% Similarity=0.385 Sum_probs=123.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHH Q ss_conf 965255789989876999999999999842224233024----3379998878999999999988746987-23879899 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 75 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~----~~~~~i~~~~~eave~E~~~~~~~~~~~-~~Gl~~~~ 75 (136) |||+|+++++|+|||++|+.|++.+++.++.+.|+.+++ ++++.+++++.+||++|++|++++++.+ ++|++++. T Consensus 224 l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~~~~~~~e~~~~v~~l~~eav~~E~~~~~~~~~~~~i~g~~~~~ 303 (375) T 1mxr_A 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDI 303 (375) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTTCCBTTBSHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH T ss_conf 85489999999853999999999999999842796358898899999999999999999999999984578858989999 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCC-CCCCCCCCCHHHHHHHCCC Q ss_conf 999999999999997697867898788867999972366-7847673212222443026 Q 537021.9.peg.7 76 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAGL 133 (136) Q Consensus 76 ~~~Yi~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~-~~~nFFE~r~~~Y~k~~~~ 133 (136) +++||+|+||+||.+||++++|++.+||+||+..+.+.. +++||||+|+|+|++|+.. T Consensus 304 ~~~yi~y~an~~L~~lG~~~~f~~~~~p~~~~~~~~~~~~~~~nFFe~~~t~Y~~~~~~ 362 (375) T 1mxr_A 304 LCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQID 362 (375) T ss_dssp HHHHHHHHHHHHHHHTTCCCCSCCCCCSCGGGGGTC----------------------- T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEECCCC T ss_conf 99999999999999779999999999985689998713887548766871001233556 No 10 >>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, cavity, monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} (A:) Probab=99.94 E-value=5.9e-27 Score=197.22 Aligned_cols=127 Identities=16% Similarity=0.103 Sum_probs=118.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136) |||+++++++|+|||++|+.|++.+++.+++|+|+.. ++.++.+++++.+||++|.+|+.++++...+|++++.+.+|+ T Consensus 197 l~~~~~~~~~I~rDE~~H~~f~~~~~~~l~~e~~e~~-~~~~e~~~~~~~~~v~~e~~~~~~~~~~~~~g~~~~~~~~y~ 275 (323) T 3ee4_A 197 LPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANW-TVFETRMNELIPLALRLIEEGFALYGDQPPFDLSKDDFLQYS 275 (323) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHH-HHHHHHHHHHHHHHHHHHHHHHHTTTTCCSTTCCHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH T ss_conf 9618999999980488999999999999986395030-699999999999999999999886277766799999999999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCC Q ss_conf 9999999997697867898788867999972366784767321222244302 Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAG 132 (136) Q Consensus 81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~ 132 (136) +|++|+||+.+|+++.|+...+|++|.. ..+++||||+|+|+|+|||+ T Consensus 276 ~~~~~~~l~~lg~~~~~~~~~~~~~~~~----~~~~~nFFe~~~~~Y~~~~a 323 (323) T 3ee4_A 276 TDKGMRRFGTISNARGRPVAEIDVDYSP----AQLEDTFADEDRRTLAAASA 323 (323) T ss_dssp HHHHHHHHHHHHTTTTCCGGGTCC---------------------------- T ss_pred HHHHHHHCCCCCCCCCCCHHHCCCCCCH----HHHHHHHHHHHHHHHHHHCC T ss_conf 9999998799422346984433676897----99999988989999876149 No 11 >>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} (A:161-311) Probab=99.94 E-value=3.5e-27 Score=198.73 Aligned_cols=100 Identities=28% Similarity=0.575 Sum_probs=95.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136) |+|+|++|+||+|||++|+.|++.+++++++++| .+.+++++++||++|.+|++++|+.+.+|++++++++|| T Consensus 51 m~g~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~~-------~~~~~~~~~eave~E~~~~~~~~~~~~~g~~~~~i~~yi 123 (151) T 2o1z_A 51 LHGLTFSNELISRDEGLHTDFNCLIYSLLENKLP-------EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYI 123 (151) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHTTBTTTBCCTTTTCCHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH T ss_conf 2238999999940256668899999999874599-------999999999999999999999667986899999999999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHH Q ss_conf 9999999997697867898788867999 Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYTENPFPWMS 108 (136) Q Consensus 81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~ 108 (136) +|+||+||.+||++++|++ +||+|||+ T Consensus 124 ~y~an~~l~~LG~~~~y~~-~nP~~w~e 150 (151) T 2o1z_A 124 EFVADRLLECLGSPKIFHA-KNPFNWMD 150 (151) T ss_dssp HHHHHHHHHHTTCCCSSCC-CCCCTTTT T ss_pred HHHHHHHHHHCCCCCCCCC-CCCCCCCC T ss_conf 9999999997799998999-99986515 No 12 >>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase; 2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A* 3chu_A 2jcd_A (A:) Probab=99.18 E-value=1.4e-11 Score=96.32 Aligned_cols=118 Identities=9% Similarity=0.028 Sum_probs=98.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHH Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989-99999 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP-SCEQY 79 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~-~~~~Y 79 (136) |||+++++++|+|||+.|+.|++.+++.+..+.|....+.+.+.+.+++..++..|..+.++++. .+|++.. .+..| T Consensus 213 ~p~~~~~~~~i~rDE~~H~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~--~~Gl~~~~~~~~~ 290 (336) T 3chh_A 213 QPMHSLITTLHLRDETAHGSIVVEVVRELYARMNEQQRRALVRCLPIALEAFAEQDLSALLLELN--AAGIRGAEEIVGD 290 (336) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHCCCTHHHHHHHH--HHTCTTHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH--HCCCCHHHHHHHH T ss_conf 84999999999999999999999999999986999999999999999999998613247799998--8699879999998 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH-HCCCCCCCCCC-CCHHHH Q ss_conf 9999999999769786789878886799997-23667847673-212222 Q 537021.9.peg.7 80 MQFIANRRCHQIGLEPLFKYTENPFPWMSEV-IDLKKEKNFFE-TRVTEY 127 (136) Q Consensus 80 i~y~an~rL~~lGl~~~f~~~~nP~~W~~~~-~~~~~~~nFFE-~r~~~Y 127 (136) ++|.+|+++.++|++ ++++|+++. +.+..-..|++ ..+.+| T Consensus 291 ~~~~~~~~~~~~~~~-------~~~~~l~~~Gl~~~~~~~~~~~~~l~~~ 333 (336) T 3chh_A 291 LRSTAGGTRLVRDFS-------GARKMVEQLGLDDAVDFDFPERPDWSPH 333 (336) T ss_dssp CC-------CCCBCH-------HHHHHHHHTTCTTTCCCCCCCCCCC--- T ss_pred HHCHHHHHHHHHHHH-------HHHHHHHHCCCCCCCCCCCCCCCCCCCC T ss_conf 729587899999888-------8999999848988999986768887799 No 13 >>1za0_A Possible acyl-[acyl-carrier protein] desaturase DESA2 (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle; 2.00A {Mycobacterium tuberculosis H37RV} (A:) Probab=91.52 E-value=0.36 Score=28.08 Aligned_cols=89 Identities=15% Similarity=0.019 Sum_probs=48.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCCCCCCCHHHHHH Q ss_conf 6525578998987699999999999984222423302433799988789999---9999998874698723879899999 Q 537021.9.peg.7 2 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT---LLEIAYAHETMPKGFVGLNAPSCEQ 78 (136) Q Consensus 2 ~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eav---e~E~~~~~~~~~~~~~Gl~~~~~~~ 78 (136) |.+.++...|++||.-|..|+..+++.+.+.+|...-.. +..++.... .....|.+..--..-.|+. -.. T Consensus 176 Pvl~~i~~~Ia~DE~rH~~f~~~~~~~~l~~~p~~~~~a----~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~y---~~~ 248 (275) T 1za0_A 176 PILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETIAA----IAARAADLDVLGADIEAYRDKLQNVADAGIF---GKP 248 (275) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHH----HHHHHHHCCCTTTTSTTCHHHHHHHHHTTSS---SHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH----HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC---CHH T ss_conf 799999999988899999999999999986580879999----9999970799888787678999999996899---889 Q ss_pred HHHHHHHHHHHHCCCCCCC Q ss_conf 9999999999976978678 Q 537021.9.peg.7 79 YMQFIANRRCHQIGLEPLF 97 (136) Q Consensus 79 Yi~y~an~rL~~lGl~~~f 97 (136) +..-+....++.+|+.++= T Consensus 249 ~~~~v~~~~~~~~~~~~~~ 267 (275) T 1za0_A 249 QLRQLISDRITAWGLAGEP 267 (275) T ss_dssp HHHHHHHHHHHHTTCTTCG T ss_pred HHHHHHHHHHHHHCCCCHH T ss_conf 9999999999982888713 No 14 >>2oc5_A Hypothetical protein; NP_895059.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 1.68A {Prochlorococcus marinus str} (A:) Probab=88.74 E-value=1.9 Score=23.34 Aligned_cols=81 Identities=14% Similarity=0.181 Sum_probs=46.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHHH-HHHHHH Q ss_conf 557899898769999999999998422242330243379998878999999999988746987-238798999-999999 Q 537021.9.peg.7 5 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSC-EQYMQF 82 (136) Q Consensus 5 ~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~-~~Gl~~~~~-~~Yi~y 82 (136) .+|.+=..+||.+|+.||..-++.-. +..++++.+.-++..-+-..-++.+-.+. ++||.++.+ .+|+-- T Consensus 148 RkITegVVkDEY~HLN~Ge~WLk~~f--------~~~k~el~~AN~~nLPlv~~ML~qV~~Da~vL~Meke~lvedFmi~ 219 (244) T 2oc5_A 148 RKITEGVVKDEYTHLNYGEAWLKANL--------ESCREELLEANRENLPLIRRXLDQVAGDAAVLQXDKEDLIEDFLIA 219 (244) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 88877676436766015899999999--------9999999998885064999999999988999768899999999999 Q ss_pred HHHHHHHHCCCC Q ss_conf 999999976978 Q 537021.9.peg.7 83 IANRRCHQIGLE 94 (136) Q Consensus 83 ~an~rL~~lGl~ 94 (136) . ...|.+||+. T Consensus 220 Y-~eAL~~IGf~ 230 (244) T 2oc5_A 220 Y-QESLTEIGFN 230 (244) T ss_dssp H-HHHHHHHTCC T ss_pred H-HHHHHHCCCC T ss_conf 9-9999975975 No 15 >>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier protein desaturase; electron transfer, four-helix bundle, oxidoreductase; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 1afr_A 2j2f_A (A:156-321) Probab=88.52 E-value=1.3 Score=24.49 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=29.3 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH Q ss_conf 525578998987699999999999984222423 Q 537021.9.peg.7 3 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 35 (136) Q Consensus 3 G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~ 35 (136) =++++-..|++||..|..|...++..+..-+|. T Consensus 37 vl~~i~~~IA~DE~RH~~fY~~~v~~~le~dPd 69 (166) T 2uw1_A 37 KLAHICGSIASDEKRHATAYTKIVEKLAEIDPD 69 (166) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH T ss_conf 999999998778999999999999999843817 No 16 >>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A (A:1-349,A:476-500) Probab=71.22 E-value=7.8 Score=19.29 Aligned_cols=90 Identities=18% Similarity=0.084 Sum_probs=51.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCCCCCCC-HHHHHH Q ss_conf 255789989876999999999999842224233024337999887899999999998----874698723879-899999 Q 537021.9.peg.7 4 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA----HETMPKGFVGLN-APSCEQ 78 (136) Q Consensus 4 ~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~----~~~~~~~~~Gl~-~~~~~~ 78 (136) ++.+++.+..||.-|...+..+++.+..+... +.+++.+-..+-.+...=..+. ++..+....-.+ .+.+.+ T Consensus 220 ~~~l~~~~~~de~rH~~~g~~ll~~l~~~~nr---~~lQ~ald~w~~ra~~af~~~~~~~~d~~~~~~~~~~~~~e~~~d 296 (374) T 3ge3_A 220 FANLISSIQTDESRHAQQGGPALQLLIENGKR---EEAQKKVDMAIWRAWRLFAVLTGPVMDYYTPLEDRSQSFKEFMYE 296 (374) T ss_dssp HHHHHHHHHHHHHHHGGGHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCSSCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 99999999889999998589999999967766---999999999999889999988888888448663225349999999 Q ss_pred HHHHHHHHHHHHCCCCCC Q ss_conf 999999999997697867 Q 537021.9.peg.7 79 YMQFIANRRCHQIGLEPL 96 (136) Q Consensus 79 Yi~y~an~rL~~lGl~~~ 96 (136) -+.=....+|..+||..+ T Consensus 297 ~~~~~~~~~L~~lGL~~P 314 (374) T 3ge3_A 297 WIIGQFERSLIDLGLDKP 314 (374) T ss_dssp HTTTTHHHHHHHTTCCCC T ss_pred HHHHHHHHHHHHHCCCCC T ss_conf 988999999998279986 No 17 >>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, four-helix bundle, domain swapping; 1.70A {Sulfolobus tokodaii str} (A:) Probab=57.71 E-value=14 Score=17.65 Aligned_cols=63 Identities=14% Similarity=0.013 Sum_probs=42.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9652557899898769999999999998422242330243379998878999999999988746 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 64 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~ 64 (136) .+|++..++-++.+|..|.......+..+-. .|.+......+.+.+++..++..|....+.+- T Consensus 39 ~~~~~~~f~~~a~eE~~Ha~~l~~~l~~lgg-~p~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~ 101 (144) T 1j30_A 39 YPEIAGLLRSIAEGETAHAFGHLDFIRQGGL-TDPATDKPIGTLEQMIESAIAGETYEWTQMYP 101 (144) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-BCTTTSCBCSSHHHHHHHHHHHHHHHHHTHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 7999999999999999999999999986799-98766667687098999999999999999999 No 18 >>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, structural genomics; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum ms-1} (A:) Probab=51.63 E-value=15 Score=17.51 Aligned_cols=103 Identities=12% Similarity=0.049 Sum_probs=57.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-H-------------HHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 6525578998987699999999999984222423302-4-------------3379998878999999999988746987 Q 537021.9.peg.7 2 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT-K-------------EFQQKSRTMLHEATLLEIAYAHETMPKG 67 (136) Q Consensus 2 ~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~-~-------------~~~~~i~~~~~eave~E~~~~~~~~~~~ 67 (136) ++++...+-++.+|.-|.......++.+-...+.... + .....+.+++..|+..|.+-+...... T Consensus 37 ~~~~~~f~~~a~eE~~Ha~~l~~~l~~lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~a~~~Y~~~- 115 (167) T 2oh3_A 37 LDTATVFRDXARFSTLHGDEIKQRSRALELPKLXSWQYRWKTPPEVGDENDIHYLXTPYHALRYARDNEIRGXEYYKEA- 115 (167) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCGGGTSCCCCCCSSCC---CGGGSHHHHHHHHHHHHHHHHHHHHHH- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH- T ss_conf 9999999999999999999999998735898641134320110343211002245799999999999999999999999- Q ss_pred CCCCCHHHHHHHHHHHH----------HHHHHHCCCCCCCCCCCCCHHH Q ss_conf 23879899999999999----------9999976978678987888679 Q 537021.9.peg.7 68 FVGLNAPSCEQYMQFIA----------NRRCHQIGLEPLFKYTENPFPW 106 (136) Q Consensus 68 ~~Gl~~~~~~~Yi~y~a----------n~rL~~lGl~~~f~~~~nP~~W 106 (136) .-..+-..+++.++.++ ...+..+.-...+... ....| T Consensus 116 a~~~~D~~~~~~l~~i~~~E~~H~~~l~~~l~~~~~~~~~~~~-~~~~~ 163 (167) T 2oh3_A 116 AANSADPEVKRLGADFAAEEAEHVVALDKWIEKTPRPSITWSE-DADPA 163 (167) T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC--------- T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCC T ss_conf 9886898899999999999999999999999875789987455-89876 No 19 >>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} (A:1-90) Probab=51.21 E-value=18 Score=16.97 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=16.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5255789989876999999999999842 Q 537021.9.peg.7 3 GIAEQYQYIMRDESLHLNFGIDVINQIK 30 (136) Q Consensus 3 G~~~~i~~I~RDE~lH~~~~~~l~~~l~ 30 (136) .+.++...++.+|..|......++..+. T Consensus 50 ~~k~~f~~LA~eE~~H~~~l~~ly~~l~ 77 (90) T 2fzf_A 50 ALKEKINWLAEEEKKHEALLRKLYSQMF 77 (90) T ss_dssp THHHHHHHHHHHTHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 7999999999999999999999998718 No 20 >>3hl1_A Ferritin like protein; NP_419375.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.95A {Caulobacter vibrioides} (A:) Probab=46.40 E-value=21 Score=16.49 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=25.2 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5255789989876999999999999842 Q 537021.9.peg.7 3 GIAEQYQYIMRDESLHLNFGIDVINQIK 30 (136) Q Consensus 3 G~~~~i~~I~RDE~lH~~~~~~l~~~l~ 30 (136) ..++.++=|+.+|..|....+++++.|- T Consensus 42 ~~~~~i~~ia~EEM~H~~~~an~i~aLG 69 (317) T 3hl1_A 42 VPYRLIQAAVYQEXLHAQLVSNIANAYG 69 (317) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 7999999999999999999999999808 No 21 >>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus furiosus} (A:) Probab=44.55 E-value=7.1 Score=19.56 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=22.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH Q ss_conf 652557899898769999999999998422242 Q 537021.9.peg.7 2 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 34 (136) Q Consensus 2 ~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p 34 (136) +++.+..+.+++||.-|......+++.+..+.+ T Consensus 48 ~~ikklF~~lA~eE~~H~~~f~~ll~~l~~~~~ 80 (345) T 2e0z_A 48 ENVRKILLDVAREEKAHVGEFMALLLNLDPEQV 80 (345) T ss_dssp --------------------------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH T ss_conf 989999999878899879999999998698999 No 22 >>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 2.00A {Thermotoga maritima MSB8} (A:) Probab=43.87 E-value=23 Score=16.24 Aligned_cols=63 Identities=13% Similarity=-0.045 Sum_probs=42.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 96525578998987699999999999984222423302----43379998878999999999988746 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETM 64 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~----~~~~~~i~~~~~eave~E~~~~~~~~ 64 (136) ++|+++..+-++.+|..|.......++.+-.. |.+.+ ......+.+++..+++.|..-++.+- T Consensus 50 ~~~~a~~f~~~A~eE~~Ha~~l~~~l~~~gg~-~~~~~~~~~~~~~~~~~e~l~~~l~~E~~~~~~y~ 116 (176) T 1vlg_A 50 FKGFAHWMKKQAQEELTHAMKFYEYIYERGGR-VELEAIEKPPSNWNGIKDAFEAALKHEEFVTQSIY 116 (176) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCCCBCCCCCCCSSHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 67799999999999999999999999982898-73688778877779889999999999999999999 No 23 >>1mhy_B Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon metabolism; 2.00A {Methylosinus trichosporium} (B:39-395) Probab=36.37 E-value=30 Score=15.49 Aligned_cols=103 Identities=3% Similarity=-0.166 Sum_probs=56.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 255789989876999999999999842224233---02433799988789999999999887469872387989999999 Q 537021.9.peg.7 4 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHL---WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136) Q Consensus 4 ~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~---~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136) ++.++..+..||.-|...+..+++.+..+.|+. ....+...+..-+-.+...=..++-.... ..+-.....++.+ T Consensus 242 ~~~l~~s~q~d~~rh~~~~~alvk~~l~~dp~~~~~N~~~l~~W~~~w~~~~~~Al~~l~~~~~~--~~~~~~~s~~e~~ 319 (357) T 1mhy_B 242 TPFFTAQSQTYFQTTRGAIDDLFVYCLANDSEFGAHNRTFLNAWTEHYLASSVAALKDFVGLYAK--VEKVAGATDSAGV 319 (357) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGG--SCCCTTTTSHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCHHHH T ss_conf 69999988889999999999999999855973236689999999999999999999986787514--7731223458999 Q ss_pred HHHHHHHHHHCCCCCC--CCCCCCCHHHHHH Q ss_conf 9999999997697867--8987888679999 Q 537021.9.peg.7 81 QFIANRRCHQIGLEPL--FKYTENPFPWMSE 109 (136) Q Consensus 81 ~y~an~rL~~lGl~~~--f~~~~nP~~W~~~ 109 (136) +=....++..+|+..+ |+.+ -|-.|... T Consensus 320 ~e~i~~~~~~~~l~~le~~Glk-~P~~~~~~ 349 (357) T 1mhy_B 320 SEALQRVFGDWKIDYADKIGFR-VDVDQKVD 349 (357) T ss_dssp HHHHHHHHHHHHHHTHHHHTCC-CCHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCC-CCHHHHHH T ss_conf 9999999999998778860886-74999999 No 24 >>1mty_B Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} (B:31-384) Probab=34.50 E-value=32 Score=15.30 Aligned_cols=102 Identities=4% Similarity=-0.150 Sum_probs=58.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 255789989876999999999999842224233---02433799988789999999999887469872387989999999 Q 537021.9.peg.7 4 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHL---WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136) Q Consensus 4 ~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~---~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136) ++.++..+..||.-|...+..+++.+..+.|+. ..+.++..+-.-+-.+...=..++--....+..--+.+...+-+ T Consensus 242 ~~~l~~s~q~D~~rh~~~~~alvk~~l~~dp~~~~~Nr~~lq~wid~w~~ra~~Al~~l~g~~~~y~~~~~~~~~~~~~~ 321 (354) T 1mty_B 242 TPFFINQAQTYFQIAKQGVQDLYYNCLGDDPEFSDYNRTVMRNWTGKWLEPTIAALRDFMGLFAKLPAGTTDKEEITASL 321 (354) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGSCTTSCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH T ss_conf 79999999999999998999999999854863306689999999999999999999986788741787889989999999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHH Q ss_conf 9999999997697867898788867999 Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYTENPFPWMS 108 (136) Q Consensus 81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~ 108 (136) .-....++..+|++--. + -|-.|-. T Consensus 322 ~~~~~~~~~~~~l~~Gl--~-~p~~~~~ 346 (354) T 1mty_B 322 YRVVDDWIEDYASRIDF--K-ADRDQIV 346 (354) T ss_dssp HHHHHHHHHHTGGGGTC--C-CCHHHHH T ss_pred HHHHHHHHHHHCCCCCE--E-EEHHHHH T ss_conf 99998999863101242--5-2199999 No 25 >>1krq_A Ferritin; H-chain like four-helix bundle, metal binding protein; 2.70A {Campylobacter jejuni} (A:) Probab=32.38 E-value=34 Score=15.08 Aligned_cols=61 Identities=13% Similarity=0.015 Sum_probs=37.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 96525578998987699999999999984222423302----433799988789999999999887 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHE 62 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~----~~~~~~i~~~~~eave~E~~~~~~ 62 (136) .+|++...+-++.+|..|.......++.+-. .|.+.+ ......+.+++..+.+.|.+-+.. T Consensus 36 ~~~~a~~f~~~A~eE~~Ha~~l~~~l~~lgg-~p~~~~~~~~~~~~~~~~~~l~~~l~~E~~~~~~ 100 (167) T 1krq_A 36 LDGAGAFLFAHASEESDHAKKLITYLNETDS-HVELQEVKQPEQNFKSLLDVFEKTYEHEQFITKS 100 (167) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CCCCCCCCCCCCCCSCHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 0789999999989999999999999998278-8726888776556798778999999999999999 No 26 >>1otk_A Protein PAAC, phenylacetic acid degradation protein PAAC; structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli K12} (A:82-219) Probab=28.54 E-value=40 Score=14.66 Aligned_cols=84 Identities=10% Similarity=0.073 Sum_probs=55.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---------CCCCHH Q ss_conf 25578998987699999999999984222423302433799988789999999999887469872---------387989 Q 537021.9.peg.7 4 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF---------VGLNAP 74 (136) Q Consensus 4 ~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~---------~Gl~~~ 74 (136) ++.+..-+.++|.-|..++...+..|..-.+ +-++.+++|++.=-.++...|+.+. ++.+.+ T Consensus 39 La~ia~K~~kEe~yH~~h~~~w~~rL~~gt~---------Es~~rmq~Al~~~wp~~~elF~~~~~~~~l~~~Gi~~~~~ 109 (138) T 1otk_A 39 LAAISAKAIKEARYHLRFSRGWLERLGNGTD---------VSGQKMQQAINKLWRFTAELFDADEIDIALSEEGIAVDPR 109 (138) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH---------HHHHHHHHHHHHHGGGTGGGGCCCHHHHHHHHTTSSCCGG T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH---------HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHH T ss_conf 9999999989999999999999999985689---------9999999999999898866447782689998878989879 Q ss_pred HHHHHHHHHHHHHHHHCCCCCC Q ss_conf 9999999999999997697867 Q 537021.9.peg.7 75 SCEQYMQFIANRRCHQIGLEPL 96 (136) Q Consensus 75 ~~~~Yi~y~an~rL~~lGl~~~ 96 (136) .+.+--.-.....|..+|+.-+ T Consensus 110 ~Lr~~w~~~v~~~l~~agL~~P 131 (138) T 1otk_A 110 TLRAAWEAEVFAGINEATLNVP 131 (138) T ss_dssp GGHHHHHHHHHHHHHHTTCCCC T ss_pred HHHHHHHHHHHHHHHHHCCCCC T ss_conf 9999999999999998089999 No 27 >>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator of TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824} (A:81-203) Probab=27.10 E-value=42 Score=14.49 Aligned_cols=50 Identities=4% Similarity=-0.011 Sum_probs=38.7 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 78999999999988746987238798999999999999999976978678 Q 537021.9.peg.7 48 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 97 (136) Q Consensus 48 ~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi~y~an~rL~~lGl~~~f 97 (136) --+++++.=.-.....+..++...+++.+.+.+++.....=+.||+|..- T Consensus 69 yP~E~ae~ll~l~n~~ld~~~~~~~~ee~~~ri~~~~~~ler~lG~~~~~ 118 (123) T 3b81_A 69 YPLETAEIILTLSHFYLDEDLFKWKKEDXSLKLTAFKETLIKILDADEDT 118 (123) T ss_dssp CHHHHHHHHHHHHHTTTCHHHHTCCGGGHHHHHHHHHHHHHHHHTCCTTT T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCH T ss_conf 99999999999999999999873374329999999999999986899661 No 28 >>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrolase; 2.40A {Helicobacter pylori} PDB: 2rd3_A (A:) Probab=24.90 E-value=46 Score=14.23 Aligned_cols=23 Identities=9% Similarity=0.049 Sum_probs=9.6 Q ss_pred HHHHHHHHCCC--CCCCCCCCCHHH Q ss_conf 67999972366--784767321222 Q 537021.9.peg.7 104 FPWMSEVIDLK--KEKNFFETRVTE 126 (136) Q Consensus 104 ~~W~~~~~~~~--~~~nFFE~r~~~ 126 (136) ..|+..+.+.. .+++.++.-+.. T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (221) T 3ibx_A 163 GHWIKGYSSKEFQACVNWNINLLDS 187 (221) T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 9999986792069999999999999 No 29 >>2inp_C Phenol hydroxylase component PHL; DIIRON, four-helix bundle, regulatory protein, oxidoreductase; 2.30A {Pseudomonas stutzeri} PDB: 2inn_C (C:217-328) Probab=24.37 E-value=47 Score=14.17 Aligned_cols=84 Identities=8% Similarity=-0.033 Sum_probs=61.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 52557899898769999999999998422242330243379998878999999999988746987238798999999999 Q 537021.9.peg.7 3 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 82 (136) Q Consensus 3 G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi~y 82 (136) -++.+++....|..-|...+..|++.+..|.|+ ..+-+...+.+-...+...=..|..-+.. ++...-++- T Consensus 26 ~~~~l~~~~~~d~~r~~~w~~alvk~~~~e~~~-Nr~ll~~W~~~W~~~a~~Al~p~a~~~~~--------~~a~~~a~~ 96 (112) T 2inp_C 26 DVSMLTEFMRDWYKESLRWTNAMMKAVAGESET-NRELLQKWIDHWEPQAYEALKPLAEASVG--------IDGLNEARA 96 (112) T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTC--------THHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------CHHHHHHHH T ss_conf 308999988868999999999999999815800-18999999999999999999987664056--------518999999 Q ss_pred HHHHHHHHCCCCC Q ss_conf 9999999769786 Q 537021.9.peg.7 83 IANRRCHQIGLEP 95 (136) Q Consensus 83 ~an~rL~~lGl~~ 95 (136) ....|+..+|+.. T Consensus 97 ~~~~~~~~~GL~~ 109 (112) T 2inp_C 97 ELSARLKKFELQS 109 (112) T ss_dssp HHHHHHHTTTCCC T ss_pred HHHHHHHHCCCCC T ss_conf 9999999669998 No 30 >>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON centre, HAEM Fe-coproporphyrin III cofactor; HET: FEC; 1.95A {Desulfovibrio desulfuricans} (A:) Probab=23.76 E-value=48 Score=14.09 Aligned_cols=29 Identities=21% Similarity=0.165 Sum_probs=18.1 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 65255789989876999999999999842 Q 537021.9.peg.7 2 VGIAEQYQYIMRDESLHLNFGIDVINQIK 30 (136) Q Consensus 2 ~G~~~~i~~I~RDE~lH~~~~~~l~~~l~ 30 (136) +|++...+-++.+|..|..-....+..+- T Consensus 43 ~~i~~~f~~~a~ee~~ha~~~~e~i~~lg 71 (179) T 1nfv_A 43 GELAANMKLIAIDEMRHAENFAERIKELG 71 (179) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 89999999999999999999999999728 No 31 >>1vjx_A Putative ferritin-like DIIRON-carboxylate protein TM1526; structural genomics, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:) Probab=21.94 E-value=52 Score=13.86 Aligned_cols=83 Identities=12% Similarity=0.043 Sum_probs=48.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 65255789989876999999999999842224233024----------------33799988789999999999887469 Q 537021.9.peg.7 2 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----------------EFQQKSRTMLHEATLLEIAYAHETMP 65 (136) Q Consensus 2 ~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~----------------~~~~~i~~~~~eave~E~~~~~~~~~ 65 (136) +++++..+-++.+|.-|......+++.+....+..... .....+..++..|...|...+...-. T Consensus 42 ~~~~~~f~~la~eE~~H~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~a~~~Y~~ 121 (157) T 1vjx_A 42 GEIKKTFLELADQERIHAEIFRKXSDQENWDEVDSYLAGYAFYEVFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYE 121 (157) T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTCBCCSBCCCCCCCCCTTGGGCSCCCHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999998627985336777653223477788886115687999999998889999999999 Q ss_pred CCCCCCCHHHHHHHHHHHHH Q ss_conf 87238798999999999999 Q 537021.9.peg.7 66 KGFVGLNAPSCEQYMQFIAN 85 (136) Q Consensus 66 ~~~~Gl~~~~~~~Yi~y~an 85 (136) -.....-..+...+..+++ T Consensus 122 -~~~~~~d~~~~~~~~~l~~ 140 (157) T 1vjx_A 122 -LKDGLVNSDAQKTVKKIID 140 (157) T ss_dssp -HHHHCCSHHHHHHHHHHHH T ss_pred -HHHHCCCHHHHHHHHHHHH T ss_conf -9987799999999999999 No 32 >>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A (A:509-666) Probab=20.10 E-value=48 Score=14.13 Aligned_cols=56 Identities=13% Similarity=0.113 Sum_probs=33.1 Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHCCCCCC--CCCHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 33799988789999--9999998874698723--87989999999999999999769786 Q 537021.9.peg.7 40 EFQQKSRTMLHEAT--LLEIAYAHETMPKGFV--GLNAPSCEQYMQFIANRRCHQIGLEP 95 (136) Q Consensus 40 ~~~~~i~~~~~eav--e~E~~~~~~~~~~~~~--Gl~~~~~~~Yi~y~an~rL~~lGl~~ 95 (136) ++...+..+..+-- +.=..++..+|....+ |++.++...|++-+.....+.+|..+ T Consensus 96 plIk~L~~l~~~~~~~e~~~~~~~~Lyd~A~l~~G~~~edp~~f~~r~~~lL~k~l~~~~ 155 (158) T 2o1u_A 96 PLIKDMLRRVKEDEDDKTVSDLAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLNIDP 155 (158) T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHHTTSCC-- T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCC T ss_conf 899999987652877799999999999998986899971699999999999998559995 Done!