Query 537021.9.peg.75_1 Match_columns 136 No_of_seqs 102 out of 1392 Neff 7.1 Searched_HMMs 23785 Date Mon May 23 12:02:00 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_75.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1syy_A Ribonucleoside-diphosph 100.0 1.6E-39 6.9E-44 278.6 12.1 134 1-135 213-346 (346) 2 2rcc_A Ribonucleoside-diphosph 100.0 1.6E-37 6.8E-42 265.5 12.2 136 1-136 206-344 (346) 3 1mxr_A Ribonucleotide reductas 100.0 3.4E-36 1.4E-40 256.8 11.8 132 1-132 224-361 (375) 4 1h0o_A Ribonucleoside-diphosph 100.0 1.3E-35 5.4E-40 253.0 10.2 125 1-134 253-377 (390) 5 3n37_A Ribonucleoside-diphosph 100.0 1.5E-34 6.1E-39 246.1 12.6 131 1-134 178-311 (319) 6 1jk0_A RNR Y2, ribonucleoside- 100.0 1.4E-34 5.9E-39 246.2 10.0 124 1-133 279-402 (419) 7 2p1i_A Ribonucleotide reductas 100.0 3.1E-34 1.3E-38 243.9 10.9 124 1-133 212-335 (349) 8 3dhz_A Ribonucleotide reductas 100.0 3.9E-33 1.6E-37 236.7 11.4 129 1-132 188-319 (329) 9 1jk0_B RNR Y4, ribonucleoside- 100.0 5.5E-33 2.3E-37 235.8 7.8 125 1-134 206-330 (345) 10 2o1z_A Ribonucleotide reductas 99.9 2.2E-27 9.4E-32 199.0 8.4 100 1-108 211-310 (311) 11 3mjo_A Ribonucleotide reductas 99.9 7.3E-26 3E-30 189.1 12.2 109 1-112 187-296 (296) 12 3ee4_A Probable ribonucleoside 99.8 8.7E-20 3.7E-24 149.2 8.1 121 1-127 197-318 (323) 13 2uw1_A Desaturase, plastid del 89.4 0.42 1.8E-05 26.6 4.5 35 2-36 191-225 (338) 14 1za0_A Possible acyl-[acyl-car 89.2 0.72 3E-05 25.1 5.6 33 2-34 176-208 (275) 15 2oc5_A Hypothetical protein; N 88.8 1.3 5.6E-05 23.3 9.4 82 5-95 148-231 (244) 16 2inc_A Toluene, O-xylene monoo 77.7 3.8 0.00016 20.3 9.3 90 2-96 217-313 (491) 17 3ge3_A Toluene-4-monooxygenase 62.3 8.2 0.00034 18.2 7.9 88 4-96 220-314 (500) 18 3hl1_A Ferritin like protein; 57.6 9.8 0.00041 17.6 3.9 27 4-30 43-69 (317) 19 2fzf_A Hypothetical protein; s 52.0 12 0.00051 17.1 7.0 82 2-84 49-144 (175) 20 1nfv_A Bacterioferritin; 24 su 50.5 13 0.00053 16.9 3.6 62 1-63 42-106 (179) 21 3e2c_A Bacterioferritin; DIIRO 49.4 13 0.00055 16.8 3.6 15 1-15 1-15 (158) 22 3ez0_A Uncharacterized protein 47.7 14 0.00059 16.6 5.4 90 3-94 126-224 (225) 23 1mty_D Methane monooxygenase h 45.1 15 0.00065 16.4 6.9 90 3-96 217-315 (512) 24 3gvy_A Bacterioferritin; iron 44.4 16 0.00066 16.3 3.2 14 1-14 1-14 (161) 25 3chh_A P-aminobenzoate N-oxyge 41.5 17 0.00073 16.0 4.8 29 6-34 218-246 (336) 26 1yuz_A Nigerythrin; rubrythrin 40.1 18 0.00077 15.9 4.0 30 1-30 59-88 (202) 27 1lko_A Rubrerythrin all-iron(I 35.9 21 0.00089 15.4 3.6 28 1-28 39-66 (191) 28 1o9i_A Pseudocatalase; oxidore 34.1 23 0.00095 15.3 3.3 29 4-32 55-83 (266) 29 2wtl_A Bacterioferritin, BFR; 33.3 23 0.00098 15.2 3.6 27 3-29 43-69 (173) 30 2kp7_A Crossover junction endo 32.1 14 0.00057 16.7 1.2 38 91-131 5-44 (87) 31 2inp_C Phenol hydroxylase comp 30.9 25 0.0011 14.9 10.8 84 4-96 243-326 (328) 32 1nnq_A Rubrerythrin; structura 28.0 29 0.0012 14.6 5.3 29 1-29 38-66 (171) 33 3fvb_A Bacterioferritin; niaid 25.7 31 0.0013 14.3 4.6 59 2-61 59-120 (182) 34 1vjx_A Putative ferritin-like 25.6 31 0.0013 14.3 4.8 84 2-86 42-141 (157) 35 2qqy_A Sigma B operon; dodecam 25.2 32 0.0013 14.3 4.4 59 2-61 42-102 (149) 36 1jgc_A Bacterioferritin, BFR; 23.2 35 0.0015 14.0 3.6 14 1-14 1-14 (161) 37 2v8t_A Manganese-containing ps 20.7 39 0.0016 13.7 3.5 30 5-34 60-89 (302) No 1 >1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune evasion, replication; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 2ani_A Probab=100.00 E-value=1.6e-39 Score=278.57 Aligned_cols=134 Identities=59% Similarity=1.056 Sum_probs=130.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136) |+|+|++|+||+|||++|+.|++.|++++++|+|+++++++++++++++.+||++|++|++++|+.+++|||++++++|| T Consensus 213 m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~~~~~~~~~~~Gl~~~~~~~Yv 292 (346) T 1syy_A 213 MIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYV 292 (346) T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCBTTBCHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH T ss_conf 85449987786145788999999999999851978756899999999999999999999998565887899999999999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCC Q ss_conf 9999999997697867898788867999972366784767321222244302668 Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAGLKW 135 (136) Q Consensus 81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~~~ 135 (136) +|+||+||.+||++|+|+. +||+|||++.+++++++||||+|||+|+|||++.| T Consensus 293 ~y~an~rL~~lG~~~~f~~-~nP~~w~~~~~~~~~~~nFFe~r~~~Y~k~~~~~~ 346 (346) T 1syy_A 293 QHIADRRLERIGLKPIYHT-KNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346 (346) T ss_dssp HHHHHHHHHHTTCCCSSCC-CCSCTTC---------------------------- T ss_pred HHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCC T ss_conf 9999999997799998999-99637899863867776878897210454577889 No 2 >2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Probab=100.00 E-value=1.6e-37 Score=265.50 Aligned_cols=136 Identities=29% Similarity=0.505 Sum_probs=127.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136) |+|++++|+||+|||++|+.|++.|++++++++|+++++++++.+++++++||++|++|++++|+.+++|||++++++|| T Consensus 206 m~g~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~~~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~e~~~~yi 285 (346) T 2rcc_A 206 MVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLMKAADLEKDWFRYIIGDKIPGINPEDMETYI 285 (346) T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSTTCCHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH T ss_conf 98789999999843768899999999998762661025678999999999999999999999818776888899999999 Q ss_pred HHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHHCCC-CCCCCCCCCHHHHHHHCCC-CCC Q ss_conf 9999999997697867898-788867999972366-7847673212222443026-689 Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAGL-KWD 136 (136) Q Consensus 81 ~y~an~rL~~lGl~~~f~~-~~nP~~W~~~~~~~~-~~~nFFE~r~~~Y~k~~~~-~~D 136 (136) +|+||+||.+||++++|+. .+||+|||++++++. +++||||+|+|+|+||+.. .|| T Consensus 286 ~y~an~~L~~lG~~~~f~~~~~nP~~w~~~~~~~~~~~~nFFE~~~t~Y~k~~~~~~~D 344 (346) T 2rcc_A 286 SFIANKRAVQLGMEKPYPEIKHNPMKWIRAYEDVNSGKSDFFEQKSRQYAKVSADNGFD 344 (346) T ss_dssp HHHHHHHHHHTTCCCSCTTCCSCSCTTC------------------------------- T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCC T ss_conf 99999999977999999877789588999864347652588889778753267778866 No 3 >1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 1yfd_A 1piy_A 1r65_A 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A 1av8_A 1pfr_A ... Probab=100.00 E-value=3.4e-36 Score=256.83 Aligned_cols=132 Identities=27% Similarity=0.393 Sum_probs=121.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCHHH Q ss_conf 965255789989876999999999999842224----233024337999887899999999998874698-723879899 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN----PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPS 75 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~----p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~-~~~Gl~~~~ 75 (136) |||+|++|+||+|||++|+.|++.+++.++++. ++.++++++++|++++.+||++|++|++++|+. +++|||+++ T Consensus 224 m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~~~~~~~~~~e~~~~i~~~~~eave~E~~~~~~~~~~~~~~glt~~~ 303 (375) T 1mxr_A 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDI 303 (375) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTTCCBTTBSHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH T ss_conf 86679999999842889999999999999843786245665899999999999999999999999863688858989999 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCC-CCCCCCCCHHHHHHHCC Q ss_conf 9999999999999976978678987888679999723667-84767321222244302 Q 537021.9.peg.7 76 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAG 132 (136) Q Consensus 76 ~~~Yi~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~~-~~nFFE~r~~~Y~k~~~ 132 (136) +++||+|+||+||.+||++++|+..+||+|||+.++++.+ ++||||+|+|+|+||+. T Consensus 304 ~~~yi~y~an~rL~~LG~~~~f~~~~nP~~w~~~~~~~~~~~~nFFe~~~t~Y~~~~~ 361 (375) T 1mxr_A 304 LCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 361 (375) T ss_dssp HHHHHHHHHHHHHHHTTCCCCSCCCCCSCGGGGGTC---------------------- T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHEEECCC T ss_conf 9999999999999977999999999998367999870488754876687000123344 No 4 >1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A Probab=100.00 E-value=1.3e-35 Score=253.01 Aligned_cols=125 Identities=32% Similarity=0.608 Sum_probs=116.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136) |+|+|++|+||+|||++|+.|+|.|++.++.+.+ ++.+++++.+||++|++|++++|+.+++|||++++++|| T Consensus 253 M~G~~~~i~~I~RDE~lH~~f~~~l~~~l~~e~~-------~~~i~e~~~eavelE~~~~~~~~~~~~~Gln~~~~~~YI 325 (390) T 1h0o_A 253 MPGLTFSNELISRDEGLHCDFACLMFKHLVHKPA-------EQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYI 325 (390) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH T ss_conf 1316888799998899999999999998740216-------999999999999999999998567875898999999999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC Q ss_conf 999999999769786789878886799997236678476732122224430266 Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAGLK 134 (136) Q Consensus 81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~~ 134 (136) +|+||+||.+||++++|++ +||+|||+ .++..+++||||+||++|+|+|.++ T Consensus 326 ky~an~~L~~LG~~~~f~~-~NP~~wme-~i~~~~ktnFFE~rvt~Y~k~g~~~ 377 (390) T 1h0o_A 326 EFVADRLMLELGFNKIFRV-ENPFDFME-NISLEGKTNFFEKRVGEYQRMGVMS 377 (390) T ss_dssp HHHHHHHHHHTTCCCSSCC-CCSCGGGC-------------------------- T ss_pred HHHHHHHHHHCCCCCCCCC-CCCHHHHH-HHCCCCCCCCCCCCHHHCEECCCCC T ss_conf 9999999997799998999-99609998-6224788777677723201565446 No 5 >3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A Probab=100.00 E-value=1.5e-34 Score=246.12 Aligned_cols=131 Identities=20% Similarity=0.243 Sum_probs=122.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136) |||+|++|+||+|||++|+.|++.|++.++++.|+.+++++++++++++++||++|.+|++++++. |++++++++|| T Consensus 178 m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~e~~~~~~~~~~~~i~e~~~eav~~E~~~~~~~~~~---g~~~~~~~~yi 254 (319) T 3n37_A 178 LTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAE---TPWADDVKAFL 254 (319) T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT---SSCHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHH T ss_conf 856899999999788899999999999876528487765689999999999999999999998744---64227799999 Q ss_pred HHHHHHHHHHCCCCCCCCCC---CCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC Q ss_conf 99999999976978678987---8886799997236678476732122224430266 Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYT---ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAGLK 134 (136) Q Consensus 81 ~y~an~rL~~lGl~~~f~~~---~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~~ 134 (136) +|+||+||.+||++|+|+.. .||++|+...+++.+++||||+|||+|+||++.. T Consensus 255 ky~an~~L~~lG~~~~f~~~~~~~nP~~w~~~~~~~~~~~nFFE~~~t~Y~k~~~~~ 311 (319) T 3n37_A 255 CYNANKALMNLGYEPLFPAEMAEVNPAILAALSPNADENHDFFSGSGSSYVMGKAVE 311 (319) T ss_dssp HHHHHHHHHHTTCCCCSCGGGCCCCHHHHHHHCC----------------------- T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCC T ss_conf 999999999779998889865788956899872066645688788701021056787 No 6 >1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A Probab=100.00 E-value=1.4e-34 Score=246.22 Aligned_cols=124 Identities=32% Similarity=0.559 Sum_probs=115.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136) |+|+|++|+||+|||++|+.|+|.|++.++.+.| .+.+.+++.+||++|.+|+.++++.+++|||++++++|| T Consensus 279 M~Gl~~~i~~I~RDE~lH~~f~~~L~~~l~~e~~-------~~~v~~~i~eavelE~e~~~~~l~~~l~Gln~~~m~~YI 351 (419) T 1jk0_A 279 MPGLTFSNELICRDEGLHTDFACLLFAHLKNKPD-------PAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYV 351 (419) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH T ss_conf 1526998899998999999999999999873210-------789999999999999999987327875799999999999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCC Q ss_conf 99999999976978678987888679999723667847673212222443026 Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAGL 133 (136) Q Consensus 81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~ 133 (136) +|+||+||.+||++++|++ +||+|||+ .++..++|||||+||++|+||+.+ T Consensus 352 ky~Anr~L~~LG~~~~f~~-~NP~~wme-~i~~~~ktnFFE~rvt~Y~k~~v~ 402 (419) T 1jk0_A 352 EFVADRLLVAFGNKKYYKV-ENPFDFME-NISLAGKTNFFEKRVSDYQKAGVM 402 (419) T ss_dssp HHHHHHHHHTTTCCCSSCC-CCCCGGGG-C----------------------- T ss_pred HHHHHHHHHHCCCCCCCCC-CCCCHHHH-HHCCCCCCCCCCCCHHHHHHCCCC T ss_conf 9999999997699987899-99836888-734578777766768888762366 No 7 >2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, structural genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii str} Probab=100.00 E-value=3.1e-34 Score=243.94 Aligned_cols=124 Identities=31% Similarity=0.616 Sum_probs=116.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136) |+|+|++|+||+|||++|+.|++.|++.++.+.| ++.+++++.+||++|.+|++++++.+++|++++++++|| T Consensus 212 m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~e~~-------e~~v~~~~~eave~E~~~~~~~~~~~~~gl~~~~~~~yi 284 (349) T 2p1i_A 212 LHGLTFSNELISRDEGLHTDFNCLIYSLLENKLP-------ENVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYI 284 (349) T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHHHHTTTSCSTTTTCCHHHHHHHH T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH T ss_conf 0205988788754287899899999999752088-------789999999999999999999702253345699999999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCC Q ss_conf 99999999976978678987888679999723667847673212222443026 Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAGL 133 (136) Q Consensus 81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~ 133 (136) +|+||+||.+||++|+|++ +||+|||+ .+++.+++||||+|+++|+|||++ T Consensus 285 ~y~an~~L~~LG~~~~f~~-~nP~~w~~-~~~~~~ktnFFe~r~t~Y~k~~~~ 335 (349) T 2p1i_A 285 EFVADRLLECLGCSKVFHS-KNPFNWMD-LISLQGKTNFFEKRVADYQKSGVM 335 (349) T ss_dssp HHHHHHHHHHTTCCCSSCC-CCSCCC--------------------------- T ss_pred HHHHHHHHHHCCCCCCCCC-CCCCCHHH-HHCCCCCCCCCCCCHHHHHHCCCC T ss_conf 9999999997799999999-99954577-853576778888876764316666 No 8 >3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A 1uzr_A* Probab=100.00 E-value=3.9e-33 Score=236.74 Aligned_cols=129 Identities=19% Similarity=0.280 Sum_probs=118.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136) |+|+|++|+||+|||++|+.|++.|++.++++.|+.+++++++.+++++++||++|++|++++|+. +|++ +++++|| T Consensus 188 m~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~~~~~~~~~e~~~~i~~~~~eav~~E~~~~~~~f~~--~gl~-~~i~~Yi 264 (329) T 3dhz_A 188 LTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDD--LGWT-EDVKRFL 264 (329) T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCH-HHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCH-HHHHHHH T ss_conf 834799999998548999999999999887776799888779999999999999999999998643--4636-9999999 Q ss_pred HHHHHHHHHHCCCCCCCCCC---CCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCC Q ss_conf 99999999976978678987---88867999972366784767321222244302 Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYT---ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAG 132 (136) Q Consensus 81 ~y~an~rL~~lGl~~~f~~~---~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~ 132 (136) +|+||+||.+||++|+|+.. .||++|+...+++.+++||||+|+|+|++|+. T Consensus 265 ky~an~rL~~lG~~~~f~~~~~~~~P~~~~~~~~~~~~~~nFFE~~~t~Y~~~~~ 319 (329) T 3dhz_A 265 RYNANKALNNLGYEGLFPTDETKVSPAILSSLSPNADENHDFFSGSGSSYVIGKA 319 (329) T ss_dssp HHHHHHHHHHTTCCCSSCGGGCCCCHHHHHHHC---------------------- T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHCCC T ss_conf 9999999997799988897667898166998720567567875476331021355 No 9 >1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A Probab=99.98 E-value=5.5e-33 Score=235.78 Aligned_cols=125 Identities=24% Similarity=0.461 Sum_probs=114.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136) |+|+|++|+||+|||++|+.|++.|++.++.+.| .+.+++++++||++|.+|+..+++.+++|++++++++|| T Consensus 206 m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~e~~-------~~~i~~~~~eave~e~~~~~~~~~~~~~gl~~~~~~~Yi 278 (345) T 1jk0_B 206 MPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPN-------PKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYI 278 (345) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHHHHTTSCC-----------CTHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH T ss_conf 4115999889886899999999999999751000-------358999999999999999985456553365899999999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC Q ss_conf 999999999769786789878886799997236678476732122224430266 Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAGLK 134 (136) Q Consensus 81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~~ 134 (136) +|+||+||.+||++|+|++ +||+|||+... ..++|||||+|+|+|+|+|+++ T Consensus 279 ~y~an~~L~~lG~~~~f~~-~nP~~w~~~~~-~~~ktnFFe~r~t~Y~k~~~~~ 330 (345) T 1jk0_B 279 EFVADGLLQGFGNEKYYNA-VNPFEFMEDVA-TAGKTTFFEKKVSDYQKASDMS 330 (345) T ss_dssp HHHHHHHHHHTTCCCCC------------------------------------- T ss_pred HHHHHHHHHHCCCCCCCCC-CCCHHHHHHHH-CCCCCCCCCCCHHHCCCCCCCC T ss_conf 9999999997799987899-99748999873-7677644577633120355566 No 10 >2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} Probab=99.94 E-value=2.2e-27 Score=198.96 Aligned_cols=100 Identities=28% Similarity=0.575 Sum_probs=95.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136) |+|+|++|+||+|||++|+.|++.+++.++.+.| ++.+++++++||++|++|++++|+.+++|||++++++|| T Consensus 211 m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~-------~e~i~~~~~eavelE~~~~~~~~~~~~~Gl~~~~~~~Yi 283 (311) T 2o1z_A 211 LHGLTFSNELISRDEGLHTDFNCLIYSLLENKLP-------EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYI 283 (311) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHTTBTTTBCCTTTTCCHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH T ss_conf 1508999999981498999999999999853299-------999999999999999999998767986799999999999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHH Q ss_conf 9999999997697867898788867999 Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYTENPFPWMS 108 (136) Q Consensus 81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~ 108 (136) +|+||+||.+||++|+|++ +||+|||+ T Consensus 284 ~y~an~~L~~lGl~~~f~~-~NP~~Wme 310 (311) T 2o1z_A 284 EFVADRLLECLGSPKIFHA-KNPFNWMD 310 (311) T ss_dssp HHHHHHHHHHTTCCCSSCC-CCCCTTTT T ss_pred HHHHHHHHHHCCCCCCCCC-CCCCCCCC T ss_conf 9999999997789998999-99987616 No 11 >3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} PDB: 1uzr_A* Probab=99.93 E-value=7.3e-26 Score=189.06 Aligned_cols=109 Identities=19% Similarity=0.291 Sum_probs=101.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136) |||+|++|+||+|||++|+.|++.++++++++.|+.+++++++++++++.+||++|.+|++++|+. +|++. ++++|| T Consensus 187 m~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~e~~~~~~~~~~~~i~~~~~~ave~E~~~~~~~~~~--~gl~~-~i~~yv 263 (296) T 3mjo_A 187 LTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDD--LGWTE-DVKRFL 263 (296) T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCHH-HHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHH-HHHHHH T ss_conf 834799999999999999999999999887877899988889999999999999999999998702--57299-999999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHC Q ss_conf 999999999769786789878886-79999723 Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYTENPF-PWMSEVID 112 (136) Q Consensus 81 ~y~an~rL~~lGl~~~f~~~~nP~-~W~~~~~~ 112 (136) +|+||+||.+||++|+|++.++|. ||+..+++ T Consensus 264 ~y~an~~L~~lG~~~~f~~~~~~~~P~i~~~l~ 296 (296) T 3mjo_A 264 RYNANKALNNLGYEGLFPTDETKVSPAILSSLS 296 (296) T ss_dssp HHHHHHHHHHTTCCCSSCGGGCCCCHHHHHHHC T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCC T ss_conf 999999999788999999876888878872039 No 12 >3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, cavity, monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} Probab=99.80 E-value=8.7e-20 Score=149.18 Aligned_cols=121 Identities=14% Similarity=0.162 Sum_probs=97.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136) |||++++|+||+|||++|+.||+.+++.+++|+|+.++ .+++.+++++.+|+++|.++....++..++|++.+ +|| T Consensus 197 m~g~~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~~~~-~~~~~i~el~~~a~e~e~~~~~~~~~~~~~gl~~e---~yv 272 (323) T 3ee4_A 197 LPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWT-VFETRMNELIPLALRLIEEGFALYGDQPPFDLSKD---DFL 272 (323) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHH-HHHHHHHHHHHHHHHHHHHHHHTTTTCCSTTCCHH---HHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH---HHH T ss_conf 83299999999966999999999999999874930448-99999999999999999999987077766799999---999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCC-CCCCCCCHHHH Q ss_conf 999999999769786789878886799997236678-47673212222 Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEY 127 (136) Q Consensus 81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~~~-~nFFE~r~~~Y 127 (136) +|+||++|.+||.-+ ....+|++|++--.+.... ..|.+.....- T Consensus 273 ~Yvad~~l~~LG~i~--~a~~~p~~~~d~~~~p~~l~~~f~~~~~~~~ 318 (323) T 3ee4_A 273 QYSTDKGMRRFGTIS--NARGRPVAEIDVDYSPAQLEDTFADEDRRTL 318 (323) T ss_dssp HHHHHHHHHHHHHHH--TTTTCCGGGTCC------------------- T ss_pred HHHHHHHHHHCCCCC--CCCCCCHHHCCCCCCHHHHHHHHHHHHHHHH T ss_conf 999999998779931--2446997765777897999999999999998 No 13 >2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier protein desaturase; electron transfer, four-helix bundle, oxidoreductase; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 1afr_A 2j2f_A Probab=89.45 E-value=0.42 Score=26.64 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=30.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH Q ss_conf 65255789989876999999999999842224233 Q 537021.9.peg.7 2 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 36 (136) Q Consensus 2 ~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~ 36 (136) |-++++...|++||..|..|...+++.+..-+|.- T Consensus 191 PvL~~i~~~IA~DE~rH~~fY~~~v~~~le~dPd~ 225 (338) T 2uw1_A 191 KKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDT 225 (338) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH T ss_conf 99999999998899999999999999998539388 No 14 >1za0_A Possible acyl-[acyl-carrier protein] desaturase DESA2 (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle; 2.00A {Mycobacterium tuberculosis H37RV} SCOP: a.25.1.2 Probab=89.19 E-value=0.72 Score=25.08 Aligned_cols=33 Identities=21% Similarity=0.121 Sum_probs=29.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH Q ss_conf 652557899898769999999999998422242 Q 537021.9.peg.7 2 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 34 (136) Q Consensus 2 ~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p 34 (136) |-++++..-|++||..|..|...+++.+..-+| T Consensus 176 PvL~~i~~rIA~DE~rH~~fy~~~v~~~le~dp 208 (275) T 1za0_A 176 PILAGLIDRIARDEVRHEEFFANLVTHCLDYTR 208 (275) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 599999999988899999999999999986590 No 15 >2oc5_A Hypothetical protein; NP_895059.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 1.68A {Prochlorococcus marinus str} SCOP: a.25.1.6 Probab=88.76 E-value=1.3 Score=23.34 Aligned_cols=82 Identities=13% Similarity=0.190 Sum_probs=47.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHHH-HHHHHH Q ss_conf 557899898769999999999998422242330243379998878999999999988746987-238798999-999999 Q 537021.9.peg.7 5 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSC-EQYMQF 82 (136) Q Consensus 5 ~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~-~~Gl~~~~~-~~Yi~y 82 (136) .+|.+=..+||.+|+.||..-++.-. +..++++.+.-++..-+-..-++.+-.+. ++||.++.+ .+|+-- T Consensus 148 RkITegVVkDEY~HLN~Ge~WLk~~f--------~~~K~el~~AN~~nLPlv~~ML~qV~~Da~vL~Meke~lvedFmi~ 219 (244) T 2oc5_A 148 RKITEGVVKDEYTHLNYGEAWLKANL--------ESCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLIA 219 (244) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHH--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 88877676447765025899999999--------9999999998885054999999999878999778899999999999 Q ss_pred HHHHHHHHCCCCC Q ss_conf 9999999769786 Q 537021.9.peg.7 83 IANRRCHQIGLEP 95 (136) Q Consensus 83 ~an~rL~~lGl~~ 95 (136) . ...|.++|+.. T Consensus 220 Y-~eAL~~IGf~~ 231 (244) T 2oc5_A 220 Y-QESLTEIGFNT 231 (244) T ss_dssp H-HHHHHHHTCCH T ss_pred H-HHHHHHCCCCH T ss_conf 9-99999759758 No 16 >2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 2rdb_A* Probab=77.66 E-value=3.8 Score=20.33 Aligned_cols=90 Identities=19% Similarity=0.123 Sum_probs=51.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCCCCCCCCHHHHH Q ss_conf 65255789989876999999999999842224233024337999887899999999----99887469872387989999 Q 537021.9.peg.7 2 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI----AYAHETMPKGFVGLNAPSCE 77 (136) Q Consensus 2 ~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~----~~~~~~~~~~~~Gl~~~~~~ 77 (136) +.++.++..|.+||+-|..+|..+++.+..+.+. ..++..+...|=.+..+=. -..+|..+...-..+-+ + T Consensus 217 ~~t~t~~~siqsDEaRH~~~G~~~l~~l~e~~~~---~~lQ~~vd~~fW~~~r~~~~l~g~~~dY~~p~~~~~~s~~--e 291 (491) T 2inc_A 217 HTFASLISSIQTDESRHAQQGGPSLKILVENGKK---DEAQQMVDVAIWRSWKLFSVLTGPIMDYYTPLESRNQSFK--E 291 (491) T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHHHHHTHHHHHHTSCGGGCCSCHH--H T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH--H T ss_conf 2079999986058989887589999999857877---9999999999998889999999989874485545287899--9 Q ss_pred HHHHHHHH---HHHHHCCCCCC Q ss_conf 99999999---99997697867 Q 537021.9.peg.7 78 QYMQFIAN---RRCHQIGLEPL 96 (136) Q Consensus 78 ~Yi~y~an---~rL~~lGl~~~ 96 (136) -+-+++.+ ++|..+|+.+. T Consensus 292 ~~~ew~~~~~~~~l~~yGl~~P 313 (491) T 2inc_A 292 FMLEWIVAQFERQLLDLGLDKP 313 (491) T ss_dssp HHHHHTHHHHHHHHHHHTCCCC T ss_pred HHHHHHHHHHHHHHHHHCCCCC T ss_conf 9999989999999998389987 No 17 >3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A Probab=62.28 E-value=8.2 Score=18.16 Aligned_cols=88 Identities=19% Similarity=0.134 Sum_probs=48.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCCCCCCCCCHHHHHHH Q ss_conf 25578998987699999999999984222423302433799988789999999999----88746987238798999999 Q 537021.9.peg.7 4 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY----AHETMPKGFVGLNAPSCEQY 79 (136) Q Consensus 4 ~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~----~~~~~~~~~~Gl~~~~~~~Y 79 (136) ++.++..|.+||+-|..+|..+++.+.+..+ .+.++..+-..|=.+..+=... .+|..+...--.+-+.. + T Consensus 220 ~~tv~~siqsDEaRH~~~G~~~lk~l~e~~n---~~~lQ~~vd~wfwr~~~~~~~l~G~~~dY~~~~~~r~~s~~e~--~ 294 (500) T 3ge3_A 220 FANLISSIQTDESRHAQQGGPALQLLIENGK---REEAQKKVDMAIWRAWRLFAVLTGPVMDYYTPLEDRSQSFKEF--M 294 (500) T ss_dssp HHHHHHHHHHHHHHHGGGHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCSSCHHHH--H T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH--H T ss_conf 9999999988999999858999999996776---6999999999999889999988888888448663225349999--9 Q ss_pred HHHHH---HHHHHHCCCCCC Q ss_conf 99999---999997697867 Q 537021.9.peg.7 80 MQFIA---NRRCHQIGLEPL 96 (136) Q Consensus 80 i~y~a---n~rL~~lGl~~~ 96 (136) -+++. =++|..+|+.+. T Consensus 295 ~ew~~g~~~~~L~~~Gl~~P 314 (500) T 3ge3_A 295 YEWIIGQFERSLIDLGLDKP 314 (500) T ss_dssp HHHTTTTHHHHHHHTTCCCC T ss_pred HHHHHHHHHHHHHHHCCCCC T ss_conf 99988999999998279986 No 18 >3hl1_A Ferritin like protein; NP_419375.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.95A {Caulobacter vibrioides} Probab=57.55 E-value=9.8 Score=17.63 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=24.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 255789989876999999999999842 Q 537021.9.peg.7 4 IAEQYQYIMRDESLHLNFGIDVINQIK 30 (136) Q Consensus 4 ~~~~i~~I~RDE~lH~~~~~~l~~~l~ 30 (136) ..++|+=|+++|.+|....++|++.+- T Consensus 43 a~~lI~sVa~EEMlHm~laaNiLnAiG 69 (317) T 3hl1_A 43 PYRLIQAAVYQEMLHAQLVSNIANAYG 69 (317) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999999999999999999999808 No 19 >2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 Probab=52.05 E-value=12 Score=17.06 Aligned_cols=82 Identities=15% Similarity=0.096 Sum_probs=51.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 65255789989876999999999999842224233024--------------3379998878999999999988746987 Q 537021.9.peg.7 2 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK--------------EFQQKSRTMLHEATLLEIAYAHETMPKG 67 (136) Q Consensus 2 ~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~--------------~~~~~i~~~~~eave~E~~~~~~~~~~~ 67 (136) ++++.+.+.++++|..|......+++.+....+..... .......++++.|+..|...+...-. - T Consensus 49 ~~~k~~f~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ai~~E~~a~~~Y~~-l 127 (175) T 2fzf_A 49 EALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKEHIGPELQPVARELEKVQDIIDLIRWAMKAEEIAAEFYLK-L 127 (175) T ss_dssp TTHHHHHHHHHHHTHHHHHHHHHHHHHHSTTCCCCCCSCCBSCCCCCCCSCCCSHHHHHHHHHHHHHHHHHHHHHHHH-H T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH-H T ss_conf 789999999999999999999999997379866320243210344677775025678999999999999999999999-9 Q ss_pred CCCCCHHHHHHHHHHHH Q ss_conf 23879899999999999 Q 537021.9.peg.7 68 FVGLNAPSCEQYMQFIA 84 (136) Q Consensus 68 ~~Gl~~~~~~~Yi~y~a 84 (136) ....+-..+.+-++.++ T Consensus 128 a~~~~d~~~~~~~~~i~ 144 (175) T 2fzf_A 128 EEMVKEEEKKRLMRYLA 144 (175) T ss_dssp HHTSCSHHHHHHHHHHH T ss_pred HHHCCCHHHHHHHHHHH T ss_conf 88589999999999999 No 20 >1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON centre, HAEM Fe-coproporphyrin III cofactor; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A* Probab=50.55 E-value=13 Score=16.91 Aligned_cols=62 Identities=16% Similarity=0.055 Sum_probs=38.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 965255789989876999999999999842224233024---337999887899999999998874 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK---EFQQKSRTMLHEATLLEIAYAHET 63 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~---~~~~~i~~~~~eave~E~~~~~~~ 63 (136) ++|++...+-++.+|..|..-....+..+- ..|.+... .....+.+++..+.+.|...+..+ T Consensus 42 ~~~la~~f~~~a~eE~~Ha~~lae~i~~lG-g~p~~~~~~~~~~~~~~~e~l~~~l~~E~~~~~~y 106 (179) T 1nfv_A 42 YGELAANMKLIAIDEMRHAENFAERIKELG-GEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAY 106 (179) T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCSSCCCCSCCHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 589999999999999999999999999759-99765602026677999999999999999999999 No 21 >3e2c_A Bacterioferritin; DIIRON site, iron storage, metal-binding, heme, iron, oxidoreductase; HET: HEM; 1.80A {Escherichia coli} PDB: 2vxi_A* 1bfr_A* 1bcf_A* 2htn_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* Probab=49.41 E-value=13 Score=16.79 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=10.9 Q ss_pred CCCHHHHHHHHHHHH Q ss_conf 965255789989876 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDE 15 (136) Q Consensus 1 M~G~~~~i~~I~RDE 15 (136) |+|..+++++.++.= T Consensus 1 M~~~~~ii~~Ln~~l 15 (158) T 3e2c_A 1 MKGDTKVINYLNKLL 15 (158) T ss_dssp CCCCHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHH T ss_conf 999899999999999 No 22 >3ez0_A Uncharacterized protein with ferritin-like fold; YP_832262.1, protein of unknown function with ferritin-like fold, structural genomics; HET: UNL TLA; 2.33A {Arthrobacter SP} Probab=47.70 E-value=14 Score=16.62 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=51.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHCCCCCCCCCHHHH Q ss_conf 52557899898769999999999998422242330243379998878999999999------988746987238798999 Q 537021.9.peg.7 3 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA------YAHETMPKGFVGLNAPSC 76 (136) Q Consensus 3 G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~------~~~~~~~~~~~Gl~~~~~ 76 (136) .++.++.-+.+|+. |.+|+..-++.+....|+.-. .+....+.+.-++..+=.. -....+..+..+-+.+.+ T Consensus 126 ~~a~~~~kvl~e~~-h~~~~~~~l~~~i~~d~~~~~-rlalw~RRl~geal~~~~~v~~~~~~l~~l~~~~~~~~~~~~l 203 (225) T 3ez0_A 126 GTRDVIEQIQASDE-TTEVLRERLRSALADDPRLAS-RLALWGRRLLGEALTQAQRVSYEHAFLGSLIGGEDSAAAKELV 203 (225) T ss_dssp HHHHHHHHHSCCHH-HHHHHHHHHHHHHHHCTTHHH-HHHHHHHHHHHHHHHHHHHHHHHTCCHHHHC-----CHHHHHH T ss_pred HHHHHHHHHHCCHH-HHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHH T ss_conf 89999999973004-899999999999855857788-9999999889999998575234655789887214566778889 Q ss_pred HHHH---HHHHHHHHHHCCCC Q ss_conf 9999---99999999976978 Q 537021.9.peg.7 77 EQYM---QFIANRRCHQIGLE 94 (136) Q Consensus 77 ~~Yi---~y~an~rL~~lGl~ 94 (136) .... .-.-.+||..||+- T Consensus 204 ~~~~~~l~~~H~~RM~~LGLt 224 (225) T 3ez0_A 204 SGLIAGLAEKHSKRMTQLGLT 224 (225) T ss_dssp HHHHHHHHHHHHHHHHTTTCC T ss_pred HHHHHHHHHHHHHHHHHCCCC T ss_conf 999999999999999981889 No 23 >1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ... Probab=45.09 E-value=15 Score=16.36 Aligned_cols=90 Identities=12% Similarity=0.042 Sum_probs=45.2 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCCCCCCCC-HHHHH Q ss_conf 52557899898769999999999998422242330243379998878999999----99998874698723879-89999 Q 537021.9.peg.7 3 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYAHETMPKGFVGLN-APSCE 77 (136) Q Consensus 3 G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~----E~~~~~~~~~~~~~Gl~-~~~~~ 77 (136) -+.+.+.-|..||+-|..+|-.++..+..+ |. .-+.++..+...|=.+..+ ---..+|..+... .+ ++.-+ T Consensus 217 ~~~tl~~SiqsDEaRH~~~g~~tL~~ll~d-~~-n~~~~q~~id~aFWr~~r~~~~l~G~~mDY~tp~r~--~s~~e~w~ 292 (512) T 1mty_D 217 ITPTVFLSIETDELRHMANGYQTVVSIAND-PA-SAKYLNTDLNNAFWTQQKYFTPVLGMLFEYGSKFKV--EPWVKTWD 292 (512) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCS--SCHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHC-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--HHHHHHHH T ss_conf 589999999814988865229999999846-20-379999999999999999999999888870787654--16999999 Q ss_pred HHH-HH-HHH--HHHHHCCCCCC Q ss_conf 999-99-999--99997697867 Q 537021.9.peg.7 78 QYM-QF-IAN--RRCHQIGLEPL 96 (136) Q Consensus 78 ~Yi-~y-~an--~rL~~lGl~~~ 96 (136) .|| +. .+- ++|...|+.++ T Consensus 293 ~~i~ed~~g~~~~~L~~yGl~~P 315 (512) T 1mty_D 293 RWVYEDWGGIWIGRLGKYGVESP 315 (512) T ss_dssp HHHTTTTTTHHHHTTGGGTCCCC T ss_pred HHHHHHHHHHHHHHHHHHCCCCC T ss_conf 99999999999999998389999 No 24 >3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} Probab=44.37 E-value=16 Score=16.29 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=8.1 Q ss_pred CCCHHHHHHHHHHH Q ss_conf 96525578998987 Q 537021.9.peg.7 1 MVGIAEQYQYIMRD 14 (136) Q Consensus 1 M~G~~~~i~~I~RD 14 (136) |+|..++|++.++. T Consensus 1 m~~~~e~i~~Ln~~ 14 (161) T 3gvy_A 1 MQGDAKVIEYLNAA 14 (161) T ss_dssp CCCCHHHHHHHHHH T ss_pred CCCCHHHHHHHHHH T ss_conf 99979999999999 No 25 >3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase; 2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A* 3chu_A 2jcd_A Probab=41.47 E-value=17 Score=16.00 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=17.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCH Q ss_conf 57899898769999999999998422242 Q 537021.9.peg.7 6 EQYQYIMRDESLHLNFGIDVINQIKIENP 34 (136) Q Consensus 6 ~~i~~I~RDE~lH~~~~~~l~~~l~~e~p 34 (136) .+++.-.+||.-|+.|+..+++.....-+ T Consensus 218 ~v~~iHv~DEARHisfa~e~l~~~~~~l~ 246 (336) T 3chh_A 218 LITTLHLRDETAHGSIVVEVVRELYARMN 246 (336) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999998899999999999998699 No 26 >1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIRON center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A Probab=40.11 E-value=18 Score=15.87 Aligned_cols=30 Identities=13% Similarity=0.315 Sum_probs=25.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 965255789989876999999999999842 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIK 30 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~ 30 (136) .+++++..+-++.+|..|......++..+- T Consensus 59 ~~~iA~~F~~~A~eE~~HA~~~~~~i~~l~ 88 (202) T 1yuz_A 59 YEQIARLFEATAAAELIHIGLEYALVAEME 88 (202) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 899999999999999999999999987215 No 27 >1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubredoxin-like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A Probab=35.93 E-value=21 Score=15.45 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=21.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9652557899898769999999999998 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQ 28 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~ 28 (136) .+++++..+-++++|..|.......++. T Consensus 39 ~~~iA~~F~~~A~eE~~HA~~~~~~i~~ 66 (191) T 1lko_A 39 FVQISDIFAETADQEREHAKRLFKFLEG 66 (191) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCCS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 8999999999999999999999999756 No 28 >1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A Probab=34.09 E-value=23 Score=15.25 Aligned_cols=29 Identities=10% Similarity=0.048 Sum_probs=23.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 25578998987699999999999984222 Q 537021.9.peg.7 4 IAEQYQYIMRDESLHLNFGIDVINQIKIE 32 (136) Q Consensus 4 ~~~~i~~I~RDE~lH~~~~~~l~~~l~~e 32 (136) ....+.=|+..|.-|++..+.+++.|.+. T Consensus 55 ~kdlL~dIatEEl~HlEmlat~I~~L~~~ 83 (266) T 1o9i_A 55 YKDLLLDTGTEEMAHVEMISTMIGYLLED 83 (266) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99999999999989999999999998169 No 29 >2wtl_A Bacterioferritin, BFR; metal binding protein, bacterioferritin A, heme, iron, biliverdin, iron storage, metal-binding; HET: UNL; 2.59A {Mycobacterium tuberculosis} PDB: 3bkn_A* Probab=33.26 E-value=23 Score=15.17 Aligned_cols=27 Identities=22% Similarity=0.027 Sum_probs=12.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 525578998987699999999999984 Q 537021.9.peg.7 3 GIAEQYQYIMRDESLHLNFGIDVINQI 29 (136) Q Consensus 3 G~~~~i~~I~RDE~lH~~~~~~l~~~l 29 (136) |++...+-.+.+|.-|.......+..+ T Consensus 43 ~la~~f~~~a~eE~~Ha~~l~e~I~~l 69 (173) T 2wtl_A 43 ELAAHTRAESFDEMRHAEEITDRILLL 69 (173) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999999999999999999999985 No 30 >2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus} Probab=32.10 E-value=14 Score=16.69 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=23.1 Q ss_pred CCCCCCCCCCCCCH--HHHHHHHCCCCCCCCCCCCHHHHHHHC Q ss_conf 69786789878886--799997236678476732122224430 Q 537021.9.peg.7 91 IGLEPLFKYTENPF--PWMSEVIDLKKEKNFFETRVTEYQQGA 131 (136) Q Consensus 91 lGl~~~f~~~~nP~--~W~~~~~~~~~~~nFFE~r~~~Y~k~~ 131 (136) ++..|+- ...||+ .|++++.+..+..|-. ++..|.+|- T Consensus 5 ~~~r~~P-s~~N~lfi~~L~e~~~~~~~k~~k--~~~aY~kA~ 44 (87) T 2kp7_A 5 ASVRPLP-VCPNPLFVRWLTEWRDEAASRGRH--TRFVFQKAL 44 (87) T ss_dssp ---CCCC-CSCCCHHHHHHHHHHHHHHHHTCT--THHHHHHHH T ss_pred CCCCCCC-CCCCHHHHHHHHHHHHHHHHCCCH--HHHHHHHHH T ss_conf 7889999-998899999999999999870735--799999999 No 31 >2inp_C Phenol hydroxylase component PHL; DIIRON, four-helix bundle, regulatory protein, oxidoreductase; 2.30A {Pseudomonas stutzeri} PDB: 2inn_C Probab=30.89 E-value=25 Score=14.92 Aligned_cols=84 Identities=10% Similarity=-0.009 Sum_probs=56.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH Q ss_conf 25578998987699999999999984222423302433799988789999999999887469872387989999999999 Q 537021.9.peg.7 4 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 83 (136) Q Consensus 4 ~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi~y~ 83 (136) ++..+..+..|+.-|...+..|++.+..|.|+ ....++..+.+=.-.|.+.=..++.-+. | ++...-++-. T Consensus 243 ~~~l~~~~~~d~~r~~rw~~alvk~~~~e~~~-Nr~~l~~Wi~~W~~~a~~Al~~~a~~~~-----~---~~a~~~~~~~ 313 (328) T 2inp_C 243 VSMLTEFMRDWYKESLRWTNAMMKAVAGESET-NRELLQKWIDHWEPQAYEALKPLAEASV-----G---IDGLNEARAE 313 (328) T ss_dssp GGGGGHHHHHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTT-----C---THHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC-----C---HHHHHHHHHH T ss_conf 48999988879999999999999999806832-5999999999999999999998876415-----6---0589999999 Q ss_pred HHHHHHHCCCCCC Q ss_conf 9999997697867 Q 537021.9.peg.7 84 ANRRCHQIGLEPL 96 (136) Q Consensus 84 an~rL~~lGl~~~ 96 (136) ...||..|||+.. T Consensus 314 ~~~~l~~~gL~~~ 326 (328) T 2inp_C 314 LSARLKKFELQSR 326 (328) T ss_dssp HHHHHHTTTCCCC T ss_pred HHHHHHHCCCCCC T ss_conf 9999996699988 No 32 >1nnq_A Rubrerythrin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.35A {Pyrococcus furiosus} SCOP: a.25.1.1 g.41.5.1 PDB: 2hr5_A Probab=28.00 E-value=29 Score=14.60 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=23.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 96525578998987699999999999984 Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQI 29 (136) Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l 29 (136) ++.+++..+-++.+|..|......++..+ T Consensus 38 ~~~iA~~F~~~A~~E~~HA~~~~~~l~~~ 66 (171) T 1nnq_A 38 FPNIAKLFRAIAYAEFVHAKNHFIALGKL 66 (171) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 59999999999999999999999997542 No 33 >3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308} Probab=25.73 E-value=31 Score=14.33 Aligned_cols=59 Identities=20% Similarity=0.101 Sum_probs=28.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH---HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 65255789989876999999999999842224233024---3379998878999999999988 Q 537021.9.peg.7 2 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK---EFQQKSRTMLHEATLLEIAYAH 61 (136) Q Consensus 2 ~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~---~~~~~i~~~~~eave~E~~~~~ 61 (136) +|++...+-++.+|.-|..-....+..+- -.|.+..- .....+.++++.+++.|...+. T Consensus 59 ~~la~~f~~~A~EE~~HA~~l~e~I~~lG-G~p~~~~~~~~~~~~~~~e~l~~~l~~E~~~~~ 120 (182) T 3fvb_A 59 TRLAKKEREESIEEMHHADKLIDRIIFLE-GFPNLQTVSPLRIGQNVKEVLEADLKGEYDARA 120 (182) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCCSBCCCCCCCSSHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999769-973466557675789999999999998999999 No 34 >1vjx_A Putative ferritin-like DIIRON-carboxylate protein TM1526; structural genomics, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1 Probab=25.63 E-value=31 Score=14.32 Aligned_cols=84 Identities=12% Similarity=0.076 Sum_probs=47.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 6525578998987699999999999984222423302----------------433799988789999999999887469 Q 537021.9.peg.7 2 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----------------KEFQQKSRTMLHEATLLEIAYAHETMP 65 (136) Q Consensus 2 ~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~----------------~~~~~~i~~~~~eave~E~~~~~~~~~ 65 (136) +++..+...++.+|.-|......+++.+....+.... ......+.+++..|+..|..-+..... T Consensus 42 ~~~~~~f~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~E~~a~~~Y~~ 121 (157) T 1vjx_A 42 GEIKKTFLELADQERIHAEIFRKMSDQENWDEVDSYLAGYAFYEVFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYE 121 (157) T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTCBCCSBCCCCCCCCCTTGGGCSCCCHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999998617985427777764222367777775147888999999999838889999999 Q ss_pred CCCCCCCHHHHHHHHHHHHHH Q ss_conf 872387989999999999999 Q 537021.9.peg.7 66 KGFVGLNAPSCEQYMQFIANR 86 (136) Q Consensus 66 ~~~~Gl~~~~~~~Yi~y~an~ 86 (136) . ....+-..++..++.+++. T Consensus 122 l-~~~~~d~~~r~~~~~l~~e 141 (157) T 1vjx_A 122 L-KDGLVNSDAQKTVKKIIDQ 141 (157) T ss_dssp H-HHHCCSHHHHHHHHHHHHH T ss_pred H-HHHCCCHHHHHHHHHHHHH T ss_conf 9-9877999999999999999 No 35 >2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus anthracis str} Probab=25.18 E-value=32 Score=14.27 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=32.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH--HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 652557899898769999999999998422242330--243379998878999999999988 Q 537021.9.peg.7 2 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW--TKEFQQKSRTMLHEATLLEIAYAH 61 (136) Q Consensus 2 ~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~--~~~~~~~i~~~~~eave~E~~~~~ 61 (136) +|++...+-++.+|..|.......+..+-.. |... .......+.+++..+++.|..-+. T Consensus 42 ~~~~~~f~~~a~eE~~Ha~~l~~~i~~lGg~-p~~~~~~~~~~~~~~e~L~~al~~E~~~~~ 102 (149) T 2qqy_A 42 QVLKPFFESEISDEQGHALYLAEKIKTLGGT-PTTIPLRVKQAEDVREMLEYARQSEYETIK 102 (149) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCCCCCCCCCSSHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999874998-776753101125689999999999999999 No 36 >1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1 Probab=23.24 E-value=35 Score=14.03 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=9.5 Q ss_pred CCCHHHHHHHHHHH Q ss_conf 96525578998987 Q 537021.9.peg.7 1 MVGIAEQYQYIMRD 14 (136) Q Consensus 1 M~G~~~~i~~I~RD 14 (136) |+|..++|++.++. T Consensus 1 M~~~~~ii~~Ln~~ 14 (161) T 1jgc_A 1 MKGDAKVIEFLNAA 14 (161) T ss_dssp CCCCHHHHHHHHHH T ss_pred CCCCHHHHHHHHHH T ss_conf 99989999999999 No 37 >2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A Probab=20.71 E-value=39 Score=13.70 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=23.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCH Q ss_conf 557899898769999999999998422242 Q 537021.9.peg.7 5 AEQYQYIMRDESLHLNFGIDVINQIKIENP 34 (136) Q Consensus 5 ~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p 34 (136) ...+.=|.-.|.-|++..+.+|..|....| T Consensus 60 ~dlL~dIatEEl~HlEmlat~I~~Ll~~~p 89 (302) T 2v8t_A 60 YDLIANIATEELGHIELVAATINSLLAKNP 89 (302) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSST T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 999999999999999999999999965897 Done!