RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.75_1 (136 letters) >gnl|CDD|180886 PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated. Length = 369 Score = 273 bits (700), Expect = 1e-74 Identities = 94/136 (69%), Positives = 110/136 (80%) Query: 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 60 M GIAEQYQYI+RDES+HLNFGID+INQIK+ENPHLWT EFQ + R ++ EA LE YA Sbjct: 234 MTGIAEQYQYILRDESMHLNFGIDLINQIKLENPHLWTAEFQAEIRELIKEAVELEYRYA 293 Query: 61 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 120 +TMP+G +GLNA + Y++FIANRR QIGL+P + TENPFPWMSE+IDLKKEKNFF Sbjct: 294 RDTMPRGVLGLNASMFKDYLRFIANRRLQQIGLKPQYPGTENPFPWMSEMIDLKKEKNFF 353 Query: 121 ETRVTEYQQGAGLKWD 136 ETRV EYQ G L WD Sbjct: 354 ETRVIEYQTGGALSWD 369 >gnl|CDD|181991 PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta; Reviewed. Length = 324 Score = 95.7 bits (239), Expect = 4e-21 Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 5/133 (3%) Query: 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 60 M G A+ + I+RDESLH + + + E P L +E + + +L+E E AY Sbjct: 184 MTGTAQIIRLIIRDESLHGYYIGYLFQEGLEELPELEQEELKDEIYDLLYELYENEEAYT 243 Query: 61 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK-N 118 VGL A ++Y+++ AN+R +GLEPLF + E W++ + + E + Sbjct: 244 ELLYDI--VGL-AEDVKKYIRYNANKRLMNLGLEPLFPEEEEVNPIWLNGLSNNADENHD 300 Query: 119 FFETRVTEYQQGA 131 FFE + T Y +GA Sbjct: 301 FFEGKGTSYVKGA 313 >gnl|CDD|173476 PTZ00211, PTZ00211, ribonucleoside-diphosphate reductase small subunit; Provisional. Length = 330 Score = 77.1 bits (190), Expect = 1e-15 Identities = 39/129 (30%), Positives = 74/129 (57%), Gaps = 9/129 (6%) Query: 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 60 M G+ + I RDE LH +F + + +K + P +++ + ++ EA +E + Sbjct: 193 MPGLTFSNELISRDEGLHTDFACLLYSHLKNKLP-------RERVQEIIKEAVEIEREFI 245 Query: 61 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 120 + +P +G+N+ QY++F+A+R +G+ ++ ++NPF WM ++I L+ + NFF Sbjct: 246 CDALPVDLIGMNSRLMAQYIEFVADRLLVALGVPKIYN-SKNPFDWM-DMISLQGKTNFF 303 Query: 121 ETRVTEYQQ 129 E RV EYQ+ Sbjct: 304 EKRVGEYQK 312 >gnl|CDD|178110 PLN02492, PLN02492, ribonucleoside-diphosphate reductase. Length = 324 Score = 77.0 bits (190), Expect = 2e-15 Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 9/129 (6%) Query: 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 60 M G+ + I RDE LH +F + + L K +++ + ++ EA +E + Sbjct: 182 MPGLTFSNELISRDEGLHCDFACLLYS-------LLKNKLSEERVKEIVCEAVEIEKEFV 234 Query: 61 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 120 + +P VG+NA QY++F+A+R +G E ++ NPF WM E+I L+ + NFF Sbjct: 235 CDALPCALVGMNADLMSQYIEFVADRLLVALGYEKVYN-VVNPFDWM-ELISLQGKTNFF 292 Query: 121 ETRVTEYQQ 129 E RV EYQ+ Sbjct: 293 EKRVGEYQK 301 >gnl|CDD|139206 PRK12759, PRK12759, bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional. Length = 410 Score = 75.8 bits (186), Expect = 4e-15 Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 4/139 (2%) Query: 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 60 M G+ + ++ +RDES+H+ + ENP++ EF+++ M +A LE + Sbjct: 268 MKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDRFI 327 Query: 61 HETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 119 G + GL A +QY++ I +RR +Q+GL+ ++ +NP W+ +++ NF Sbjct: 328 ELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHTNF 387 Query: 120 FETRVTEYQQGAGL--KWD 136 FE RVTEY+ AGL WD Sbjct: 388 FENRVTEYEV-AGLTGSWD 405 >gnl|CDD|181647 PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed. Length = 376 Score = 56.1 bits (136), Expect = 3e-09 Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 5/112 (4%) Query: 1 MVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLW--TKEFQQKSRTMLHEATLLE 56 M G A+ + I RDE+LHL ++N + ++P + +E +Q+ + +A E Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLMRSGKDDPEMAEIAEECKQECYDLFVQAAEQE 284 Query: 57 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 107 +A G +GLN QY+++I N R +GL+ F+ NP PW+ Sbjct: 285 KEWADYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWI 336 >gnl|CDD|179678 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated. Length = 450 Score = 28.9 bits (66), Expect = 0.39 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%) Query: 76 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS--EVID-LKKEKNFFE 121 C ++F+ NRR + +E L + E+PFP ++ E I+ L+K FE Sbjct: 265 CPDDLEFL-NRRVDKGDIERLENFIESPFPRITYTEAIEILQKSGKKFE 312 >gnl|CDD|181390 PRK08326, PRK08326, ribonucleotide-diphosphate reductase subunit beta; Validated. Length = 311 Score = 28.4 bits (64), Expect = 0.61 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 43 + G+ E + I DE H+ +G ++ + W F++ Sbjct: 195 LPGLQELVRRIGDDERRHIAWGTYTCRRLVAADDSNW-DVFEE 236 >gnl|CDD|177822 PLN02164, PLN02164, sulfotransferase. Length = 346 Score = 28.3 bits (63), Expect = 0.62 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 9/51 (17%) Query: 83 IANRRCHQIGLEPLFK--------YTENPFPWMSEVIDLKKEKN-FFETRV 124 IANR PL K Y E FP+ V LK + N F T + Sbjct: 102 IANRSRFDDSSNPLLKRNPHEFVPYIEIDFPFFPSVDVLKDKGNTLFSTHI 152 >gnl|CDD|162774 TIGR02231, TIGR02231, conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown. Length = 525 Score = 27.4 bits (61), Expect = 1.4 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 3/32 (9%) Query: 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 32 VG + + + E L+ G+D I+IE Sbjct: 394 FVGRS-HLENVAPGERFELSLGVD--EGIRIE 422 >gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional. Length = 468 Score = 26.5 bits (59), Expect = 2.6 Identities = 9/13 (69%), Positives = 10/13 (76%) Query: 50 HEATLLEIAYAHE 62 EATLLE+AY E Sbjct: 447 DEATLLELAYELE 459 >gnl|CDD|150590 pfam09935, DUF2167, Protein of unknown function (DUF2167). This domain, found in various hypothetical membrane-anchored prokaryotic proteins, has no known function. Length = 275 Score = 25.0 bits (55), Expect = 6.6 Identities = 8/27 (29%), Positives = 12/27 (44%) Query: 60 AHETMPKGFVGLNAPSCEQYMQFIANR 86 A +P GF LN E+ ++ N Sbjct: 50 ATLNLPDGFYFLNPADAEKLLELWGNP 76 >gnl|CDD|163338 TIGR03588, PseC, UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. Length = 380 Score = 25.0 bits (55), Expect = 6.8 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%) Query: 87 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAGL 133 R H I +PL ++ PW E +L F R+T+ Q GL Sbjct: 210 RSHGITKDPLLFEKQDEGPWYYEQQELG-----FNYRMTDIQAALGL 251 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.136 0.422 Gapped Lambda K H 0.267 0.0688 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 2,236,517 Number of extensions: 126375 Number of successful extensions: 244 Number of sequences better than 10.0: 1 Number of HSP's gapped: 233 Number of HSP's successfully gapped: 21 Length of query: 136 Length of database: 5,994,473 Length adjustment: 83 Effective length of query: 53 Effective length of database: 4,201,009 Effective search space: 222653477 Effective search space used: 222653477 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 52 (23.9 bits)