RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= 537021.9.peg.75_1
(136 letters)
>gnl|CDD|180886 PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit
beta; Validated.
Length = 369
Score = 273 bits (700), Expect = 1e-74
Identities = 94/136 (69%), Positives = 110/136 (80%)
Query: 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 60
M GIAEQYQYI+RDES+HLNFGID+INQIK+ENPHLWT EFQ + R ++ EA LE YA
Sbjct: 234 MTGIAEQYQYILRDESMHLNFGIDLINQIKLENPHLWTAEFQAEIRELIKEAVELEYRYA 293
Query: 61 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 120
+TMP+G +GLNA + Y++FIANRR QIGL+P + TENPFPWMSE+IDLKKEKNFF
Sbjct: 294 RDTMPRGVLGLNASMFKDYLRFIANRRLQQIGLKPQYPGTENPFPWMSEMIDLKKEKNFF 353
Query: 121 ETRVTEYQQGAGLKWD 136
ETRV EYQ G L WD
Sbjct: 354 ETRVIEYQTGGALSWD 369
>gnl|CDD|181991 PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta;
Reviewed.
Length = 324
Score = 95.7 bits (239), Expect = 4e-21
Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 5/133 (3%)
Query: 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 60
M G A+ + I+RDESLH + + + E P L +E + + +L+E E AY
Sbjct: 184 MTGTAQIIRLIIRDESLHGYYIGYLFQEGLEELPELEQEELKDEIYDLLYELYENEEAYT 243
Query: 61 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK-N 118
VGL A ++Y+++ AN+R +GLEPLF + E W++ + + E +
Sbjct: 244 ELLYDI--VGL-AEDVKKYIRYNANKRLMNLGLEPLFPEEEEVNPIWLNGLSNNADENHD 300
Query: 119 FFETRVTEYQQGA 131
FFE + T Y +GA
Sbjct: 301 FFEGKGTSYVKGA 313
>gnl|CDD|173476 PTZ00211, PTZ00211, ribonucleoside-diphosphate reductase small
subunit; Provisional.
Length = 330
Score = 77.1 bits (190), Expect = 1e-15
Identities = 39/129 (30%), Positives = 74/129 (57%), Gaps = 9/129 (6%)
Query: 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 60
M G+ + I RDE LH +F + + +K + P +++ + ++ EA +E +
Sbjct: 193 MPGLTFSNELISRDEGLHTDFACLLYSHLKNKLP-------RERVQEIIKEAVEIEREFI 245
Query: 61 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 120
+ +P +G+N+ QY++F+A+R +G+ ++ ++NPF WM ++I L+ + NFF
Sbjct: 246 CDALPVDLIGMNSRLMAQYIEFVADRLLVALGVPKIYN-SKNPFDWM-DMISLQGKTNFF 303
Query: 121 ETRVTEYQQ 129
E RV EYQ+
Sbjct: 304 EKRVGEYQK 312
>gnl|CDD|178110 PLN02492, PLN02492, ribonucleoside-diphosphate reductase.
Length = 324
Score = 77.0 bits (190), Expect = 2e-15
Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 60
M G+ + I RDE LH +F + + L K +++ + ++ EA +E +
Sbjct: 182 MPGLTFSNELISRDEGLHCDFACLLYS-------LLKNKLSEERVKEIVCEAVEIEKEFV 234
Query: 61 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 120
+ +P VG+NA QY++F+A+R +G E ++ NPF WM E+I L+ + NFF
Sbjct: 235 CDALPCALVGMNADLMSQYIEFVADRLLVALGYEKVYN-VVNPFDWM-ELISLQGKTNFF 292
Query: 121 ETRVTEYQQ 129
E RV EYQ+
Sbjct: 293 EKRVGEYQK 301
>gnl|CDD|139206 PRK12759, PRK12759, bifunctional
gluaredoxin/ribonucleoside-diphosphate reductase subunit
beta; Provisional.
Length = 410
Score = 75.8 bits (186), Expect = 4e-15
Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 4/139 (2%)
Query: 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 60
M G+ + ++ +RDES+H+ + ENP++ EF+++ M +A LE +
Sbjct: 268 MKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDRFI 327
Query: 61 HETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 119
G + GL A +QY++ I +RR +Q+GL+ ++ +NP W+ +++ NF
Sbjct: 328 ELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHTNF 387
Query: 120 FETRVTEYQQGAGL--KWD 136
FE RVTEY+ AGL WD
Sbjct: 388 FENRVTEYEV-AGLTGSWD 405
>gnl|CDD|181647 PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta;
Reviewed.
Length = 376
Score = 56.1 bits (136), Expect = 3e-09
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 1 MVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLW--TKEFQQKSRTMLHEATLLE 56
M G A+ + I RDE+LHL ++N + ++P + +E +Q+ + +A E
Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLMRSGKDDPEMAEIAEECKQECYDLFVQAAEQE 284
Query: 57 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 107
+A G +GLN QY+++I N R +GL+ F+ NP PW+
Sbjct: 285 KEWADYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWI 336
>gnl|CDD|179678 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.
Length = 450
Score = 28.9 bits (66), Expect = 0.39
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 76 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS--EVID-LKKEKNFFE 121
C ++F+ NRR + +E L + E+PFP ++ E I+ L+K FE
Sbjct: 265 CPDDLEFL-NRRVDKGDIERLENFIESPFPRITYTEAIEILQKSGKKFE 312
>gnl|CDD|181390 PRK08326, PRK08326, ribonucleotide-diphosphate reductase subunit
beta; Validated.
Length = 311
Score = 28.4 bits (64), Expect = 0.61
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 43
+ G+ E + I DE H+ +G ++ + W F++
Sbjct: 195 LPGLQELVRRIGDDERRHIAWGTYTCRRLVAADDSNW-DVFEE 236
>gnl|CDD|177822 PLN02164, PLN02164, sulfotransferase.
Length = 346
Score = 28.3 bits (63), Expect = 0.62
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 9/51 (17%)
Query: 83 IANRRCHQIGLEPLFK--------YTENPFPWMSEVIDLKKEKN-FFETRV 124
IANR PL K Y E FP+ V LK + N F T +
Sbjct: 102 IANRSRFDDSSNPLLKRNPHEFVPYIEIDFPFFPSVDVLKDKGNTLFSTHI 152
>gnl|CDD|162774 TIGR02231, TIGR02231, conserved hypothetical protein. This family
consists of proteins over 500 amino acids long in
Caenorhabditis elegans and several bacteria (Pseudomonas
aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans,
etc.). The function is unknown.
Length = 525
Score = 27.4 bits (61), Expect = 1.4
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 32
VG + + + E L+ G+D I+IE
Sbjct: 394 FVGRS-HLENVAPGERFELSLGVD--EGIRIE 422
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
Length = 468
Score = 26.5 bits (59), Expect = 2.6
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 50 HEATLLEIAYAHE 62
EATLLE+AY E
Sbjct: 447 DEATLLELAYELE 459
>gnl|CDD|150590 pfam09935, DUF2167, Protein of unknown function (DUF2167). This
domain, found in various hypothetical membrane-anchored
prokaryotic proteins, has no known function.
Length = 275
Score = 25.0 bits (55), Expect = 6.6
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 60 AHETMPKGFVGLNAPSCEQYMQFIANR 86
A +P GF LN E+ ++ N
Sbjct: 50 ATLNLPDGFYFLNPADAEKLLELWGNP 76
>gnl|CDD|163338 TIGR03588, PseC, UDP-4-keto-6-deoxy-N-acetylglucosamine
4-aminotransferase. This family of enzymes are
aminotransferases of the pfam01041 family involved in
the biosynthesis of pseudaminic acid. They convert
UDP-4-keto-6-deoxy-N-acetylglucosamine into
UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic
acid has a role in surface polysaccharide in Pseudomonas
as well as in the modification of flagellin in
Campylobacter and Helicobacter species.
Length = 380
Score = 25.0 bits (55), Expect = 6.8
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 87 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAGL 133
R H I +PL ++ PW E +L F R+T+ Q GL
Sbjct: 210 RSHGITKDPLLFEKQDEGPWYYEQQELG-----FNYRMTDIQAALGL 251
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.136 0.422
Gapped
Lambda K H
0.267 0.0688 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,236,517
Number of extensions: 126375
Number of successful extensions: 244
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 21
Length of query: 136
Length of database: 5,994,473
Length adjustment: 83
Effective length of query: 53
Effective length of database: 4,201,009
Effective search space: 222653477
Effective search space used: 222653477
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.9 bits)