HHsearch alignment for GI: peg_753 and conserved domain: COG2176
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=931.24 Aligned_cols=796 Identities=23% Similarity=0.312 Sum_probs=650.1
Q ss_pred CHHHHHHCHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCC
Q ss_conf 13343314447644329989999999978998899811651774999999999769963899999985476643344565
Q 537021.9.peg.7 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGK 90 (1033)
Q Consensus 11 FvhLh~hS~ySlldg~~~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F~~ackk~gIKPIiG~E~~v~~~~~~~~~~~~~ 90 (1033)
T Consensus 336 RVELh~HTkMS~mDai~sv~~~vk~A~kwghkaIAITDh~~VqafP~~y~~akK~giK~IyG~EanlvdD~vpiv~N~~d 415 (1444)
T COG2176 336 RVELHFHTKMSQMDAITSVEELVKQAKKWGHKAIAITDHGVVQAFPEAYKAAKKYGIKAIYGLEANLVDDGVPIVYNPDD 415 (1444)
T ss_pred EEEEEECCCHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHCHHHHHHHHHCCCEEEEEEEEEECCCCCCEECCCCC
T ss_conf 48998515324421667899999999975996488844762332668887666549618974346640578842307544
Q ss_pred CC------------------------------------------------------------------------------
Q ss_conf 66------------------------------------------------------------------------------
Q 537021.9.peg.7 91 TP------------------------------------------------------------------------------ 92 (1033)
Q Consensus 91 ~~------------------------------------------------------------------------------ 92 (1033)
T Consensus 416 ~~l~datyVVfDiETTGLs~~~d~iIE~aAvKikng~iId~f~~Fi~P~~pl~~~~telTgITdeml~~a~~i~~vL~kf 495 (1444)
T COG2176 416 QKLDDATYVVFDIETTGLSPVYDEIIEIAAVKIKNGRIIDKFQFFIKPGRPLSATITELTGITDEMLENAPEIEEVLEKF 495 (1444)
T ss_pred CCCCCCCEEEEEEECCCCCCCCCHHHHHEEEEEECCCCHHHHHHHCCCCCCCCHHHHHCCCCCHHHHCCCCCHHHHHHHH
T ss_conf 54565508999855377675420156200044338804377897508999676445420356799874883399999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 537021.9.peg.7 93 -------------------------------------------------------------------------------- 92 (1033)
Q Consensus 93 -------------------------------------------------------------------------------- 92 (1033)
T Consensus 496 ~~~~~d~IlVAHNasFD~gFl~~~~~k~~~~~~~~pvIDTL~lar~L~P~~ksh~Lg~l~kk~~v~le~hHRA~yDaeat 575 (1444)
T COG2176 496 REFIGDSILVAHNASFDMGFLNTNYEKYGLEPLTNPVIDTLELARALNPEFKSHRLGTLCKKLGVELERHHRADYDAEAT 575 (1444)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99844858996167556457888899838851027501199999875745432466778887486378753101008999
Q ss_pred ---------------------------------CCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf ---------------------------------66775399995696899999999989973248778740078999863
Q 537021.9.peg.7 93 ---------------------------------FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEI 139 (1033)
Q Consensus 93 ---------------------------------~~~~~~lvlLAkN~~Gy~nL~kL~S~a~~~~~~~~~p~i~~~~L~e~ 139 (1033)
T Consensus 576 ~~vf~~f~~~~ke~Gi~~l~eln~~l~~~~~ykr~r~~h~~i~vknq~GlKnLykLvS~s~~-kyf~~~PrI~~S~L~~- 653 (1444)
T COG2176 576 AKVFFVFLKDLKEKGITNLSELNDKLSSEDLYKRLRPKHATIYVKNQVGLKNLYKLVSISHT-KYFYGRPRIPRSVLKK- 653 (1444)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHH-HHHCCCCCCCHHHHHH-
T ss_conf 99999999999884556599986764016788632566269999531758999999888888-7642688771999997-
Q ss_pred CCCCEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHH--HHCCCCEEEEEEC-CCHH-HH---HHHHHHHHHHHHHCCCEE
Q ss_conf 489889981976796788887799789999999998--7659868999943-9911-58---999999999998189899
Q 537021.9.peg.7 140 GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQR-HRGY-DR---YRESQVVQLAYTHELPLV 212 (1033)
Q Consensus 140 ~~egLIvlsg~~~g~i~~~l~~~~~~~a~~~l~~l~--~~Fgd~~ylEl~~-~~~~-e~---~~~~~l~~lA~~~~iPlV 212 (1033)
T Consensus 654 ~regLligsac~~Gelf~a~l~k~~ee~e~iak~YDfIei~pp~~y~~li~~e~~~~~e~l~~~~k~li~~g~~l~K~Vv 733 (1444)
T COG2176 654 NREGLLIGSACSEGELFDAALQKPDEEVEEIAKFYDFIEIQPPANYAHLIEREGLKDKEALKEIIKKLIKLGKKLNKPVV 733 (1444)
T ss_pred HHCCEEECCCCCCHHHHHHHHHCCHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 41271643686512799999827999999998755758714820014678750367299999999999999998499089
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHH------HHHHHHHHHHHHHHHH
Q ss_conf 8088300787889999876688469-85765310024534323434788751220358------9987886411100013
Q 537021.9.peg.7 213 ATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFIL 285 (1033)
Q Consensus 213 aTndv~Y~~~~D~~~h~iL~aI~~~-~~l~~~~~~~~~~~~yLks~eEM~~~f~~~pe------Ai~NT~~IAe~c~~~l 285 (1033)
T Consensus 734 atgn~hyl~p~d~iyr~ilv~s~G~~~~~~r~~~~~~~P~~~frTT~EML~efsfLgee~a~eiVv~Ntn~iad~ie~i~ 813 (1444)
T COG2176 734 ATGNVHYLDPEDKIYRKILVASQGLGNPLNRTFNEQTLPEVHFRTTDEMLQEFSFLGEEKAYEIVVENTNKIADMIEDIQ 813 (1444)
T ss_pred EECCCEECCHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCE
T ss_conf 95774106857878888612157767655545565568850565179999998765287777886458288998866022
Q ss_pred HHHH-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 3221-023455575688776898899987654103420124643245783899999887789898606305578889999
Q 537021.9.peg.7 286 QVHA-PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 (1033)
Q Consensus 286 ~~~~-~~lP~f~~p~~~~~~~~~~~~Lr~l~~~Gl~~R~~~~~~~~~~~~~~y~~RLe~EL~vI~~~gf~~YFLiV~Div 364 (1033)
T Consensus 814 Pik~~LytPki---------e~a~e~v~~lty~~A~~iYG~pL------P~IVe~RiEKEL~sII~nGFaViYlISq~LV 878 (1444)
T COG2176 814 PIKDKLYTPKI---------EGAEEKVRDLTYEKAHKIYGDPL------PEIVEQRIEKELNSIIGNGFAVIYLISQKLV 878 (1444)
T ss_pred ECCCCCCCCCC---------CCHHHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHCCCEEEHHHHHHHHH
T ss_conf 36667779861---------77779999999999999867970------6999999999999997288465358889999
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHH-----------------------------------------CCCH
Q ss_conf 98510476433444420466776554403756333-----------------------------------------2310
Q 537021.9.peg.7 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-----------------------------------------FSLL 403 (1033)
Q Consensus 365 ~~ak~~gI~vGpGRGSAagSLVaY~LgIT~VDPi~-----------------------------------------~~Ll 403 (1033)
T Consensus 879 kkS~~dGYlVG-SRGSVGSSlVAtm~gITEVNPL~PHY~Cp~Cky~Ef~~d~svgsGfDLpdK~CPkCg~pl~kDG~dIP 957 (1444)
T COG2176 879 KKSLDDGYLVG-SRGSVGSSLVATMIGITEVNPLPPHYLCPECKYSEFIDDGSVGSGFDLPDKDCPKCGTPLKKDGHDIP 957 (1444)
T ss_pred HHHCCCCEEEC-CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 86114770765-78750488998763441247899653288874046623787677888899989867994356898787
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
Q ss_conf 56762100145787533365687899999998303802155422077877889999999752799889886543101458
Q 537021.9.peg.7 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 (1033)
Q Consensus 404 FERFLnp~R~~~PDIDiDf~~~~R~~vi~y~~~kyG~~~va~i~t~~t~~~k~aird~~r~~g~~~~~~~~~~~~i~~~~ 483 (1033)
T Consensus 958 FETFlGF~GDKVPDIDLNFSGeYQ~~AH~yvk~lFGe~~~fRAGTIgTvAEKTA~G-----------yV----------- 1015 (1444)
T COG2176 958 FETFLGFKGDKVPDIDLNFSGEYQPKAHNYVKELFGEDYVFRAGTIGTVAEKTAYG-----------YV----------- 1015 (1444)
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHH-----------HH-----------
T ss_conf 25532778887887667678644178889999971886515342045577887888-----------99-----------
Q ss_pred CCCCCHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCC--CHHHHEECCCCCCC---CCEEEEE
Q ss_conf 982443445229887886430742026889872011221002447440335256--66662001236768---8668851
Q 537021.9.peg.7 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQF 558 (1033)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~leg~~r~~~~Ha~Gvvi~~~--~l~~~~p~~~~~~~---~~~~~q~ 558 (1033)
T Consensus 1016 ------k~Y~ed~~~--~----~r~aEidRl~~~~tGvKRTTGQHPGGIiIvP~~~dVydFtPvqfPAdD~~sewkTTHF 1083 (1444)
T COG2176 1016 ------KKYFEDYNK--F----YRDAEIDRLVQGCTGVKRTTGQHPGGIIIVPKYMDVYDFTPVQFPADDTNSEWKTTHF 1083 (1444)
T ss_pred ------HHHHHHCCC--C----CCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf ------878876275--3----2068999999754266625688998279935976511016778888888775444003
Q ss_pred ECHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHH--------------HHCC
Q ss_conf 02133431123213565417899999999887402543433234435889987620141012--------------2114
Q 537021.9.peg.7 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI--------------FQLE 624 (1033)
Q Consensus 559 d~~~~e~~gl~K~D~Lgl~~L~~i~~~~~~i~~~~~~~d~~~ip~~D~~~~~l~~~g~t~Gv--------------FQ~e 624 (1033)
T Consensus 1084 dfh~ihdn-lLKLDILGHDDPT~ikmLqdlt---g--Idp~~IP~dD~~vm~iFss~~~Lgvtpe~i~~~tGtlGIPEFG 1157 (1444)
T COG2176 1084 DFHAIHDN-LLKLDILGHDDPTMIKMLQDLT---G--IDPKTIPMDDPEVMKIFSSTESLGVTPEQIGEKTGTLGIPEFG 1157 (1444)
T ss_pred EHHHHCCC-EEEEECCCCCCHHHHHHHHHHC---C--CCCCCCCCCCHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCC
T ss_conf 23320110-1000004789868999988722---9--9945578888768987168865788888819866654677422
Q ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHH-HHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 5347888877174048888766541141134200-368885046578502696673341033553001256898878863
Q 537021.9.peg.7 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI-VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703 (1033)
Q Consensus 625 s~~~~~~l~~~~p~~~~dl~~~~al~RPGp~~~~-~~yi~rk~g~e~~~~~hp~l~~iL~~T~Gv~vyQEQvm~ia~~~a 703 (1033)
T Consensus 1158 T~FVR~ML~eTkPktFaeLv~ISGL------SHGtdVWlgNAq~--lIk~g~~~Ls~VI~-------CRDDIMvYLI-~k 1221 (1444)
T COG2176 1158 TRFVRQMLEETKPKTFAELVRISGL------SHGTDVWLGNAQD--LIKSGIATLSDVIG-------CRDDIMVYLI-HK 1221 (1444)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHCCC------CCCCCCCCCCHHH--HHHHCCCCHHHHEE-------EHHHHHHHHH-HC
T ss_conf 4899999875499778988865167------6774102466999--99828762313305-------0078999999-84
Q ss_pred CCCHHHH----HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2684130----788976201211016778789999986249999999999999997500013310147888999999999
Q 537021.9.peg.7 704 GYSLSEA----DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 (1033)
Q Consensus 704 g~~~~ea----d~lRra~~kk~~~~~~~~~~~f~~g~~~~g~~~~~a~~i~~~i~~f~~Y~FnksHa~aya~~~y~~ayl 779 (1033)
T Consensus 1222 Glep~~AFkIME~VRKGk~lk~--------~e~~~~Mke~~Vp~WyIeSC-~KIk----YMFPKAHAaAYVlMA~RIAyF 1288 (1444)
T COG2176 1222 GLEPSLAFKIMEFVRKGKGLKP--------AEYEELMKENKVPEWYIESC-LKIK----YMFPKAHAAAYVLMAWRIAYF 1288 (1444)
T ss_pred CCCCCHHHHHHHHHHCCCCCCH--------HHHHHHHHHCCCCHHHHHHH-HHHH----HHCCHHHHHHHHHHHHHHHHH
T ss_conf 8993057999999855678885--------89999998769918999876-5465----308468899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCH----------------------------------HHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 973026667775100235420----------------------------------2589998888636850355233421
Q 537021.9.peg.7 780 KTHYPVEFLAASMTLEMDNVE----------------------------------KIKKFCQDARQFNIQIMPPSVNTPC 825 (1033)
Q Consensus 780 K~~yP~eF~aa~L~~~~~~~~----------------------------------~~~~~i~e~~~~gi~vl~PdIN~S~ 825 (1033)
T Consensus 1289 KVhhPl~YYAayfSira~~FDi~~m~~Gke~ik~k~~Ei~~~~~~~~~~kEk~l~t~lEi~~EM~aRGf~f~~idly~S~ 1368 (1444)
T COG2176 1289 KVHHPLEYYAAYFSIRADDFDIETMSKGKEAIKAKMEEINKRKGNKASPKEKNLLTVLEIVLEMLARGFKFQKIDLYKSD 1368 (1444)
T ss_pred HHCCHHHHHHHHHEEEHHHCCHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 84453998888841115531889885609999999999861204568834542575999999999736764475125136
Q ss_pred EE-EEECCCEEEEEHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 00-353198698502685896989999999998379999978999734824799899998886767234790
Q 537021.9.peg.7 826 VD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 (1033)
Q Consensus 826 ~~-f~~~~~~Ir~Gl~~Ikgvg~~~~~~Ive~r~~g~f~sl~df~~rv~~~~~nk~~le~Li~aGAfD~~~~ 896 (1033)
T Consensus 1369 At~Fvid~~~LipPFi~i~GlGe~vA~~IV~AR~Ek~FlS~eDlkkRt---kis~t~ie~~~~~G~l~~lpe 1437 (1444)
T COG2176 1369 ATEFVIDGDTLIPPFIAIPGLGENVAKSIVEAREEKEFLSKEDLKKRT---KISKTHIEKLDEMGCLEGLPE 1437 (1444)
T ss_pred CEEEEEECCEECCCEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHC---CCCHHHHHHHHHCCCCCCCCC
T ss_conf 727997588241760015871689999999986348867789998741---755889999986086357984