HHsearch alignment for GI: peg_753 and conserved domain: COG2176

>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair].
Probab=100.00  E-value=0  Score=931.24  Aligned_cols=796  Identities=23%  Similarity=0.312  Sum_probs=650.1

Q ss_pred             CHHHHHHCHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCC
Q ss_conf             13343314447644329989999999978998899811651774999999999769963899999985476643344565
Q 537021.9.peg.7   11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGK   90 (1033)
Q Consensus        11 FvhLh~hS~ySlldg~~~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F~~ackk~gIKPIiG~E~~v~~~~~~~~~~~~~   90 (1033)
T Consensus       336 RVELh~HTkMS~mDai~sv~~~vk~A~kwghkaIAITDh~~VqafP~~y~~akK~giK~IyG~EanlvdD~vpiv~N~~d  415 (1444)
T COG2176         336 RVELHFHTKMSQMDAITSVEELVKQAKKWGHKAIAITDHGVVQAFPEAYKAAKKYGIKAIYGLEANLVDDGVPIVYNPDD  415 (1444)
T ss_pred             EEEEEECCCHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHCHHHHHHHHHCCCEEEEEEEEEECCCCCCEECCCCC
T ss_conf             48998515324421667899999999975996488844762332668887666549618974346640578842307544


Q ss_pred             CC------------------------------------------------------------------------------
Q ss_conf             66------------------------------------------------------------------------------
Q 537021.9.peg.7   91 TP------------------------------------------------------------------------------   92 (1033)
Q Consensus        91 ~~------------------------------------------------------------------------------   92 (1033)
T Consensus       416 ~~l~datyVVfDiETTGLs~~~d~iIE~aAvKikng~iId~f~~Fi~P~~pl~~~~telTgITdeml~~a~~i~~vL~kf  495 (1444)
T COG2176         416 QKLDDATYVVFDIETTGLSPVYDEIIEIAAVKIKNGRIIDKFQFFIKPGRPLSATITELTGITDEMLENAPEIEEVLEKF  495 (1444)
T ss_pred             CCCCCCCEEEEEEECCCCCCCCCHHHHHEEEEEECCCCHHHHHHHCCCCCCCCHHHHHCCCCCHHHHCCCCCHHHHHHHH
T ss_conf             54565508999855377675420156200044338804377897508999676445420356799874883399999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 537021.9.peg.7   93 --------------------------------------------------------------------------------   92 (1033)
Q Consensus        93 --------------------------------------------------------------------------------   92 (1033)
                                                                                                      
T Consensus       496 ~~~~~d~IlVAHNasFD~gFl~~~~~k~~~~~~~~pvIDTL~lar~L~P~~ksh~Lg~l~kk~~v~le~hHRA~yDaeat  575 (1444)
T COG2176         496 REFIGDSILVAHNASFDMGFLNTNYEKYGLEPLTNPVIDTLELARALNPEFKSHRLGTLCKKLGVELERHHRADYDAEAT  575 (1444)
T ss_pred             HHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             99844858996167556457888899838851027501199999875745432466778887486378753101008999


Q ss_pred             ---------------------------------CCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf             ---------------------------------66775399995696899999999989973248778740078999863
Q 537021.9.peg.7   93 ---------------------------------FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEI  139 (1033)
Q Consensus        93 ---------------------------------~~~~~~lvlLAkN~~Gy~nL~kL~S~a~~~~~~~~~p~i~~~~L~e~  139 (1033)
T Consensus       576 ~~vf~~f~~~~ke~Gi~~l~eln~~l~~~~~ykr~r~~h~~i~vknq~GlKnLykLvS~s~~-kyf~~~PrI~~S~L~~-  653 (1444)
T COG2176         576 AKVFFVFLKDLKEKGITNLSELNDKLSSEDLYKRLRPKHATIYVKNQVGLKNLYKLVSISHT-KYFYGRPRIPRSVLKK-  653 (1444)
T ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHH-HHHCCCCCCCHHHHHH-
T ss_conf             99999999999884556599986764016788632566269999531758999999888888-7642688771999997-


Q ss_pred             CCCCEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHH--HHCCCCEEEEEEC-CCHH-HH---HHHHHHHHHHHHHCCCEE
Q ss_conf             489889981976796788887799789999999998--7659868999943-9911-58---999999999998189899
Q 537021.9.peg.7  140 GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQR-HRGY-DR---YRESQVVQLAYTHELPLV  212 (1033)
Q Consensus       140 ~~egLIvlsg~~~g~i~~~l~~~~~~~a~~~l~~l~--~~Fgd~~ylEl~~-~~~~-e~---~~~~~l~~lA~~~~iPlV  212 (1033)
T Consensus       654 ~regLligsac~~Gelf~a~l~k~~ee~e~iak~YDfIei~pp~~y~~li~~e~~~~~e~l~~~~k~li~~g~~l~K~Vv  733 (1444)
T COG2176         654 NREGLLIGSACSEGELFDAALQKPDEEVEEIAKFYDFIEIQPPANYAHLIEREGLKDKEALKEIIKKLIKLGKKLNKPVV  733 (1444)
T ss_pred             HHCCEEECCCCCCHHHHHHHHHCCHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             41271643686512799999827999999998755758714820014678750367299999999999999998499089


Q ss_pred             EECCCCCCCHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHH------HHHHHHHHHHHHHHHH
Q ss_conf             8088300787889999876688469-85765310024534323434788751220358------9987886411100013
Q 537021.9.peg.7  213 ATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFIL  285 (1033)
Q Consensus       213 aTndv~Y~~~~D~~~h~iL~aI~~~-~~l~~~~~~~~~~~~yLks~eEM~~~f~~~pe------Ai~NT~~IAe~c~~~l  285 (1033)
T Consensus       734 atgn~hyl~p~d~iyr~ilv~s~G~~~~~~r~~~~~~~P~~~frTT~EML~efsfLgee~a~eiVv~Ntn~iad~ie~i~  813 (1444)
T COG2176         734 ATGNVHYLDPEDKIYRKILVASQGLGNPLNRTFNEQTLPEVHFRTTDEMLQEFSFLGEEKAYEIVVENTNKIADMIEDIQ  813 (1444)
T ss_pred             EECCCEECCHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCE
T ss_conf             95774106857878888612157767655545565568850565179999998765287777886458288998866022


Q ss_pred             HHHH-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             3221-023455575688776898899987654103420124643245783899999887789898606305578889999
Q 537021.9.peg.7  286 QVHA-PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI  364 (1033)
Q Consensus       286 ~~~~-~~lP~f~~p~~~~~~~~~~~~Lr~l~~~Gl~~R~~~~~~~~~~~~~~y~~RLe~EL~vI~~~gf~~YFLiV~Div  364 (1033)
T Consensus       814 Pik~~LytPki---------e~a~e~v~~lty~~A~~iYG~pL------P~IVe~RiEKEL~sII~nGFaViYlISq~LV  878 (1444)
T COG2176         814 PIKDKLYTPKI---------EGAEEKVRDLTYEKAHKIYGDPL------PEIVEQRIEKELNSIIGNGFAVIYLISQKLV  878 (1444)
T ss_pred             ECCCCCCCCCC---------CCHHHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHCCCEEEHHHHHHHHH
T ss_conf             36667779861---------77779999999999999867970------6999999999999997288465358889999


Q ss_pred             HHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHH-----------------------------------------CCCH
Q ss_conf             98510476433444420466776554403756333-----------------------------------------2310
Q 537021.9.peg.7  365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-----------------------------------------FSLL  403 (1033)
Q Consensus       365 ~~ak~~gI~vGpGRGSAagSLVaY~LgIT~VDPi~-----------------------------------------~~Ll  403 (1033)
T Consensus       879 kkS~~dGYlVG-SRGSVGSSlVAtm~gITEVNPL~PHY~Cp~Cky~Ef~~d~svgsGfDLpdK~CPkCg~pl~kDG~dIP  957 (1444)
T COG2176         879 KKSLDDGYLVG-SRGSVGSSLVATMIGITEVNPLPPHYLCPECKYSEFIDDGSVGSGFDLPDKDCPKCGTPLKKDGHDIP  957 (1444)
T ss_pred             HHHCCCCEEEC-CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             86114770765-78750488998763441247899653288874046623787677888899989867994356898787


Q ss_pred             HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
Q ss_conf             56762100145787533365687899999998303802155422077877889999999752799889886543101458
Q 537021.9.peg.7  404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP  483 (1033)
Q Consensus       404 FERFLnp~R~~~PDIDiDf~~~~R~~vi~y~~~kyG~~~va~i~t~~t~~~k~aird~~r~~g~~~~~~~~~~~~i~~~~  483 (1033)
T Consensus       958 FETFlGF~GDKVPDIDLNFSGeYQ~~AH~yvk~lFGe~~~fRAGTIgTvAEKTA~G-----------yV----------- 1015 (1444)
T COG2176         958 FETFLGFKGDKVPDIDLNFSGEYQPKAHNYVKELFGEDYVFRAGTIGTVAEKTAYG-----------YV----------- 1015 (1444)
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHH-----------HH-----------
T ss_conf             25532778887887667678644178889999971886515342045577887888-----------99-----------


Q ss_pred             CCCCCHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCC--CHHHHEECCCCCCC---CCEEEEE
Q ss_conf             982443445229887886430742026889872011221002447440335256--66662001236768---8668851
Q 537021.9.peg.7  484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQF  558 (1033)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~leg~~r~~~~Ha~Gvvi~~~--~l~~~~p~~~~~~~---~~~~~q~  558 (1033)
T Consensus      1016 ------k~Y~ed~~~--~----~r~aEidRl~~~~tGvKRTTGQHPGGIiIvP~~~dVydFtPvqfPAdD~~sewkTTHF 1083 (1444)
T COG2176        1016 ------KKYFEDYNK--F----YRDAEIDRLVQGCTGVKRTTGQHPGGIIIVPKYMDVYDFTPVQFPADDTNSEWKTTHF 1083 (1444)
T ss_pred             ------HHHHHHCCC--C----CCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             ------878876275--3----2068999999754266625688998279935976511016778888888775444003


Q ss_pred             ECHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHH--------------HHCC
Q ss_conf             02133431123213565417899999999887402543433234435889987620141012--------------2114
Q 537021.9.peg.7  559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI--------------FQLE  624 (1033)
Q Consensus       559 d~~~~e~~gl~K~D~Lgl~~L~~i~~~~~~i~~~~~~~d~~~ip~~D~~~~~l~~~g~t~Gv--------------FQ~e  624 (1033)
T Consensus      1084 dfh~ihdn-lLKLDILGHDDPT~ikmLqdlt---g--Idp~~IP~dD~~vm~iFss~~~Lgvtpe~i~~~tGtlGIPEFG 1157 (1444)
T COG2176        1084 DFHAIHDN-LLKLDILGHDDPTMIKMLQDLT---G--IDPKTIPMDDPEVMKIFSSTESLGVTPEQIGEKTGTLGIPEFG 1157 (1444)
T ss_pred             EHHHHCCC-EEEEECCCCCCHHHHHHHHHHC---C--CCCCCCCCCCHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCC
T ss_conf             23320110-1000004789868999988722---9--9945578888768987168865788888819866654677422


Q ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHH-HHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             5347888877174048888766541141134200-368885046578502696673341033553001256898878863
Q 537021.9.peg.7  625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI-VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS  703 (1033)
Q Consensus       625 s~~~~~~l~~~~p~~~~dl~~~~al~RPGp~~~~-~~yi~rk~g~e~~~~~hp~l~~iL~~T~Gv~vyQEQvm~ia~~~a  703 (1033)
T Consensus      1158 T~FVR~ML~eTkPktFaeLv~ISGL------SHGtdVWlgNAq~--lIk~g~~~Ls~VI~-------CRDDIMvYLI-~k 1221 (1444)
T COG2176        1158 TRFVRQMLEETKPKTFAELVRISGL------SHGTDVWLGNAQD--LIKSGIATLSDVIG-------CRDDIMVYLI-HK 1221 (1444)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHCCC------CCCCCCCCCCHHH--HHHHCCCCHHHHEE-------EHHHHHHHHH-HC
T ss_conf             4899999875499778988865167------6774102466999--99828762313305-------0078999999-84


Q ss_pred             CCCHHHH----HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             2684130----788976201211016778789999986249999999999999997500013310147888999999999
Q 537021.9.peg.7  704 GYSLSEA----DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM  779 (1033)
Q Consensus       704 g~~~~ea----d~lRra~~kk~~~~~~~~~~~f~~g~~~~g~~~~~a~~i~~~i~~f~~Y~FnksHa~aya~~~y~~ayl  779 (1033)
T Consensus      1222 Glep~~AFkIME~VRKGk~lk~--------~e~~~~Mke~~Vp~WyIeSC-~KIk----YMFPKAHAaAYVlMA~RIAyF 1288 (1444)
T COG2176        1222 GLEPSLAFKIMEFVRKGKGLKP--------AEYEELMKENKVPEWYIESC-LKIK----YMFPKAHAAAYVLMAWRIAYF 1288 (1444)
T ss_pred             CCCCCHHHHHHHHHHCCCCCCH--------HHHHHHHHHCCCCHHHHHHH-HHHH----HHCCHHHHHHHHHHHHHHHHH
T ss_conf             8993057999999855678885--------89999998769918999876-5465----308468899999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCH----------------------------------HHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             973026667775100235420----------------------------------2589998888636850355233421
Q 537021.9.peg.7  780 KTHYPVEFLAASMTLEMDNVE----------------------------------KIKKFCQDARQFNIQIMPPSVNTPC  825 (1033)
Q Consensus       780 K~~yP~eF~aa~L~~~~~~~~----------------------------------~~~~~i~e~~~~gi~vl~PdIN~S~  825 (1033)
T Consensus      1289 KVhhPl~YYAayfSira~~FDi~~m~~Gke~ik~k~~Ei~~~~~~~~~~kEk~l~t~lEi~~EM~aRGf~f~~idly~S~ 1368 (1444)
T COG2176        1289 KVHHPLEYYAAYFSIRADDFDIETMSKGKEAIKAKMEEINKRKGNKASPKEKNLLTVLEIVLEMLARGFKFQKIDLYKSD 1368 (1444)
T ss_pred             HHCCHHHHHHHHHEEEHHHCCHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf             84453998888841115531889885609999999999861204568834542575999999999736764475125136


Q ss_pred             EE-EEECCCEEEEEHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             00-353198698502685896989999999998379999978999734824799899998886767234790
Q 537021.9.peg.7  826 VD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY  896 (1033)
Q Consensus       826 ~~-f~~~~~~Ir~Gl~~Ikgvg~~~~~~Ive~r~~g~f~sl~df~~rv~~~~~nk~~le~Li~aGAfD~~~~  896 (1033)
T Consensus      1369 At~Fvid~~~LipPFi~i~GlGe~vA~~IV~AR~Ek~FlS~eDlkkRt---kis~t~ie~~~~~G~l~~lpe 1437 (1444)
T COG2176        1369 ATEFVIDGDTLIPPFIAIPGLGENVAKSIVEAREEKEFLSKEDLKKRT---KISKTHIEKLDEMGCLEGLPE 1437 (1444)
T ss_pred             CEEEEEECCEECCCEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHC---CCCHHHHHHHHHCCCCCCCCC
T ss_conf             727997588241760015871689999999986348867789998741---755889999986086357984