HHsearch alignment for GI: peg_753 and conserved domain: PRK07135

>PRK07135 dnaE DNA polymerase III DnaE; Validated.
Probab=100.00  E-value=0  Score=2222.29  Aligned_cols=939  Identities=32%  Similarity=0.529  Sum_probs=851.6

Q ss_pred             CCHHHHHHCHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCC
Q ss_conf             81334331444764432998999999997899889981165177499999999976996389999998547664334456
Q 537021.9.peg.7   10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQG   89 (1033)
Q Consensus        10 ~FvhLh~hS~ySlldg~~~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F~~ackk~gIKPIiG~E~~v~~~~~~~~~~~~   89 (1033)
T Consensus         2 ~FvHLh~HS~YSlLdg~~~i~~Lv~~A~e~g~~AlALTDh~nl~Gav~F~~~ak~~gIKPIiG~e~~~~-----------   70 (987)
T PRK07135          2 KLINLHTNTEYSFLESAIKLNDLIKLAKENNLKTLVLTDHNNMFGVPKFYKLCKKNKIKPIIGLDIEVE-----------   70 (987)
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEEEC-----------
T ss_conf             031767688483105104899999999985999999864887989999999999859976768999978-----------


Q ss_pred             CCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCHHHHHH
Q ss_conf             56666775399995696899999999989973248778740078999863489889981976796788887799789999
Q 537021.9.peg.7   90 KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK  169 (1033)
Q Consensus        90 ~~~~~~~~~lvlLAkN~~Gy~nL~kL~S~a~~~~~~~~~p~i~~~~L~e~~~egLIvlsg~~~g~i~~~l~~~~~~~a~~  169 (1033)
T Consensus        71 ------~~~liLLAkN~~GY~NL~kL~S~~~~~------~~~~l~~l~~--~~~liil~~~~~g~~~~~~---------~  127 (987)
T PRK07135         71 ------NFRFILLAKNYSGYKLLNELSSKKSNN------EEIFLSDLAE--SDNLFIIDHPTKGFYAKKK---------E  127 (987)
T ss_pred             ------CCEEEEEECCHHHHHHHHHHHHHHHCC------CCCCHHHHHH--CCCEEEECCCCCCHHHHHH---------H
T ss_conf             ------971899958879999999998674338------9978898830--6998998176254666767---------6


Q ss_pred             HHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             99999876598689999439911589999999999981898998088300787889999876688469857653100245
Q 537021.9.peg.7  170 RLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT  249 (1033)
Q Consensus       170 ~l~~l~~~Fgd~~ylEl~~~~~~e~~~~~~l~~lA~~~~iPlVaTndv~Y~~~~D~~~h~iL~aI~~~~~l~~~~~~~~~  249 (1033)
T Consensus       128 ~~~~~-----~~~~~~~~~~~~~-----------------~~v~~~~~~~l~~ed~~~~~~l~~i~~~~~~----~~~~-  180 (987)
T PRK07135        128 QESEL-----KNYYINSNNPKIP-----------------NAVYVKENKLLDKEDNETLEILNKIKNNTKE----NTNF-  180 (987)
T ss_pred             HHHHH-----HHHHHHCHHCCCC-----------------CHHHHCHHHHCCHHHHHHHHHHHHHHCCCHH----CCCC-
T ss_conf             89888-----8898632003885-----------------3001120000467579999999987416320----1276-


Q ss_pred             CCCCCCCHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             34323434788751220-35899878864111000133221023455575688776898899987654103420124643
Q 537021.9.peg.7  250 PDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI  328 (1033)
Q Consensus       250 ~~~yLks~eEM~~~f~~-~peAi~NT~~IAe~c~~~l~~~~~~lP~f~~p~~~~~~~~~~~~Lr~l~~~Gl~~R~~~~~~  328 (1033)
T Consensus       181 --~~~~~-------~~~~~e~~l~NT~~IA~rC~~~~~~~~~~lP~f~~~~g----~~~~~~L~~l~~~g~~~r~~~~~-  246 (987)
T PRK07135        181 --FDFEE-------EQEIDEIILKRINYIVDNCNVEFPKIEIKLPDFDHNLG----IESELFLKKILKEAVQEKKILLS-  246 (987)
T ss_pred             --CCHHH-------HCCCHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCC----CCHHHHHHHHHHHHHHHHHCCCC-
T ss_conf             --45132-------24184999999999998567871678877999999999----99999999999848987500589-


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCHHHHHH
Q ss_conf             24578389999988778989860630557888999998510476433444420466776554403756333231056762
Q 537021.9.peg.7  329 AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL  408 (1033)
Q Consensus       329 ~~~~~~~~y~~RLe~EL~vI~~~gf~~YFLiV~Div~~ak~~gI~vGpGRGSAagSLVaY~LgIT~VDPi~~~LlFERFL  408 (1033)
T Consensus       247 ----~~~~y~~RL~~EL~VI~~mGF~~YFLIV~DfI~~Ak~~gI~VGPGRGSaAGSLVaY~LgIT~VDPi~y~LLFERFL  322 (987)
T PRK07135        247 ----NYDNVKERINYELSVIKKLKFTDYFLIIWDILKWARKNKISIGPGRGSASGSLVSYLLEITSVNPLKYDLLFERFL  322 (987)
T ss_pred             ----CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHCCCCCCHHHCCCCHHHHC
T ss_conf             ----7089999999999999976998634399999998755494546887737889999996687638765487799873


Q ss_pred             HHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf             10014578753336568789999999830380215542207787788999999975279988988654310145898244
Q 537021.9.peg.7  409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS  488 (1033)
Q Consensus       409 np~R~~~PDIDiDf~~~~R~~vi~y~~~kyG~~~va~i~t~~t~~~k~aird~~r~~g~~~~~~~~~~~~i~~~~~~~~~  488 (1033)
T Consensus       323 NPeR~smPDIDIDF~~~rR~eVI~YV~~KYG~d~VAqIiTfgT~~aKaAiRDVgRvlg~p~~~vd~iaK~Ip~~~~~~~l  402 (987)
T PRK07135        323 NPDRITMPDIDIDIQDDRRDEVLDYLFEKYGPQKVATITTFQTLGAKSAIRDVGRMLGIPESDINKISKLINANANLSQL  402 (987)
T ss_pred             CCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCH
T ss_conf             67788999823048866699999999999687648873007767788999999998289999999986348877786746


Q ss_pred             HHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHEECCCCCCCCCEEEEEECHHHHHHCC
Q ss_conf             34452298878864307420268898720112210024474403352566666200123676886688510213343112
Q 537021.9.peg.7  489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL  568 (1033)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~leg~~r~~~~Ha~Gvvi~~~~l~~~~p~~~~~~~~~~~~q~d~~~~e~~gl  568 (1033)
T Consensus       403 ~~~~~~~~~l~~~~~~~~~~~~l~~~a~~LEGl~R~~s~HAaGvVIs~~pl~~~vPl~~~~-~~~~~tq~d~~~~E~~GL  481 (987)
T PRK07135        403 YEQNKKNSKFRALVSKGDDYEKLYKIAAKIEGLPRQTGTHAAGIIISNKDITNYVPVFNSK-ENLNQVQYSMEFIEDFGL  481 (987)
T ss_pred             HHHHHHCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHCCEEECC-CCCEEEEEECCCHHHCCC
T ss_conf             9887529889988733868999999999964985544557771685076500205636879-998568877752665687


Q ss_pred             CHHHHHHHCCHHHHHHHHHHHHH-HCCCCC----CCCCCCCHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHCCCHHHHH
Q ss_conf             32135654178999999998874-025434----3323443588998762014101221145347888877174048888
Q 537021.9.peg.7  569 IKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI  643 (1033)
Q Consensus       569 ~K~D~Lgl~~L~~i~~~~~~i~~-~~~~~d----~~~ip~~D~~~~~l~~~g~t~GvFQ~es~~~~~~l~~~~p~~~~dl  643 (1033)
T Consensus       482 lK~D~LGL~~Ltvi~~~~~~i~~~~~~~~d~~~~~~~~pldD~~~~~ll~~g~T~GvFQ~ES~gm~~~l~~lkP~~feDl  561 (987)
T PRK07135        482 LKIDLLGLKNLTIIKNIEAKISDGHKITFDELINQNLNPIIDNKTFNLLSDGKTEGIFQLESPGMTATIKKVGISSFEDI  561 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHHH
T ss_conf             34456524668999999999986058885422543116887599999997257799553247599999997499979998


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
Q ss_conf             76654114113420036888504657850269667334103355300125689887886326841307889762012110
Q 537021.9.peg.7  644 IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE  723 (1033)
Q Consensus       644 ~~~~al~RPGp~~~~~~yi~rk~g~e~~~~~hp~l~~iL~~T~Gv~vyQEQvm~ia~~~ag~~~~ead~lRra~~kk~~~  723 (1033)
T Consensus       562 ia~~AL~RPGP~~~i~~yi~rk~g~~~v~y~~p~l~~iL~~TyGvivYQEQvM~ia~~~agfs~geaD~lRram~KK~~~  641 (987)
T PRK07135        562 YAIISLYRPGPIQYIPTYAKNKKDPSNIEKIFPEYDKIVAPTFGIIIYQEQIMEIAQKVAGFSFAQADILRRAISKKNET  641 (987)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHH
T ss_conf             89876205760321278998614887778889899988886378677599999999998089988999999986558711


Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             16778789999986249999999999999997500013310147888999999999973026667775100235420258
Q 537021.9.peg.7  724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK  803 (1033)
Q Consensus       724 ~~~~~~~~f~~g~~~~g~~~~~a~~i~~~i~~f~~Y~FnksHa~aya~~~y~~aylK~~yP~eF~aa~L~~~~~~~~~~~  803 (1033)
T Consensus       642 ~m~~~~~~F~~ga~~~g~~~~~a~~i~~~i~~Fa~YgFnkSHa~aYa~iayqtAyLK~~yP~eF~aa~L~~~~~~~~k~~  721 (987)
T PRK07135        642 ELDKYKEKFIEGGIKNGYSPKLVEHIYSKIEKFAQYGFNKSHAVAYATLAYKMAYYKARYPLYFYSVLISNSNGSQEKIK  721 (987)
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHH
T ss_conf             59999999996145469999999999999998624466678999999999999999854889999998457989864499


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCEEEEECCCEEEEEHHHHCCCCHHHHHHHHHHH-HCCCCCCHHHHHHHCCCCCCCHHHH
Q ss_conf             999888863685035523342100353198698502685896989999999998-3799999789997348247998999
Q 537021.9.peg.7  804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVL  882 (1033)
Q Consensus       804 ~~i~e~~~~gi~vl~PdIN~S~~~f~~~~~~Ir~Gl~~Ikgvg~~~~~~Ive~r-~~g~f~sl~df~~rv~~~~~nk~~l  882 (1033)
T Consensus       722 ~~i~e~~~~gi~vlpPdiN~S~~~~~~~~~~I~~gl~~Ikgvg~~~~~~Iv~~R~~~g~f~~~~df~~r~~~~~~~k~~~  801 (987)
T PRK07135        722 KYVGEAKNNNFKIYSPDINFSTENAVFDKGKIFLPLLMIKGLGTIAIKKIIDERNENGKYKSFFDFIKRLKFVGIKKAAI  801 (987)
T ss_pred             HHHHHHHHCCCEEECCCCCCCCCCCEEECCEEEEHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHH
T ss_conf             99999998899897998446888446579989980474367769999999999985879899999998647434899999


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             988867672347903899999899999999988654312777866665555--655776668999988899985788726
Q 537021.9.peg.7  883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT--FSDKITLEKFSVENSSVRFENEQRVLG  960 (1033)
Q Consensus       883 e~Li~aGAfD~~~~~R~~ll~~i~~~~~~~~~~~~~~~~~q~~LF~~~~~~--~~~~~~~~~~~~~~~~e~l~~E~e~LG  960 (1033)
T Consensus       802 e~Li~aGafd~~g-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~E~e~lG  880 (987)
T PRK07135        802 EKLIFANALRSFG-NMQTLIHNFELLWNHAFFVLSKKEQTDGDLINTTDFFGLELSFENILEESKRNLEEEYKNEVEYLG  880 (987)
T ss_pred             HHHHHCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEE
T ss_conf             9998568843579-979999879999999999998887514420355533344455776445689997889851050168


Q ss_pred             EEECCCCHHHHHHHHHHCCCCCHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCEEEEEEEECCCCEEEEEECC
Q ss_conf             2116385589999998748976889850558988999999961121015888769999998497049999539
Q 537021.9.peg.7  961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 (1033)
Q Consensus       961 f~lS~HPl~~~~~~l~~~~~~~~~~~~~~~~g~~v~iaG~V~~i~~~~TKkG~~mafltleD~~g~~e~~iFP 1033 (1033)
T Consensus       881 ~yls~hPl~~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~--r~~~~~~~~af~~l~D~tg~~e~~vf~  949 (987)
T PRK07135        881 MSFNAIDTVKYENKYLLNNQIRLNLLRI-GNNFRLILEIII-VI--RLRKKNKEYKKVIFADDTVEIKIFVND  949 (987)
T ss_pred             EECCCCCHHHHHHHHHHHCCCCHHHHCC-CCCCEEEEEEEE-EE--EECCCCCCEEEEEEECCCCCEEEEECH
T ss_conf             7416698699999987624221777444-667428999999-99--982189757999998688658999868