HHsearch alignment for GI: peg_753 and conserved domain: PRK09532

>PRK09532 DNA polymerase III subunit alpha; Reviewed.
Probab=100.00  E-value=0  Score=2002.77  Aligned_cols=798  Identities=39%  Similarity=0.649  Sum_probs=754.8

Q ss_pred             CCHHHHHHCHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCC
Q ss_conf             81334331444764432998999999997899889981165177499999999976996389999998547664334456
Q 537021.9.peg.7   10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQG   89 (1033)
Q Consensus        10 ~FvhLh~hS~ySlldg~~~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F~~ackk~gIKPIiG~E~~v~~~~~~~~~~~~   89 (1033)
T Consensus         2 sFvhLh~hS~yS~L~Ga~~~~eLv~~A~elG~~AlALTD~~~l~Gav~F~~a~~~~gIkPIiG~el~v~~~~~~~~----   77 (874)
T PRK09532          2 SFVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAIELLKVCRNKGIKPIIGNEMYVINGDIEKQ----   77 (874)
T ss_pred             CCCCCCCCCCCCHHCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCC----
T ss_conf             2215254663723063619999999999849999988508968899999999997799864562899717874444----


Q ss_pred             CCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCC----CCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCHH
Q ss_conf             56666775399995696899999999989973248----77874007899986348988998197679678888779978
Q 537021.9.peg.7   90 KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ  165 (1033)
Q Consensus        90 ~~~~~~~~~lvlLAkN~~Gy~nL~kL~S~a~~~~~----~~~~p~i~~~~L~e~~~egLIvlsg~~~g~i~~~l~~~~~~  165 (1033)
T Consensus        78 --~~~~~~hlvLLAkN~~GY~NL~kL~S~a~l~g~~~k~~~~~P~id~e~L~~-~~egLI~ls~cl~gev~~~ll~~~~~  154 (874)
T PRK09532         78 --KRHRKYHQVVLAKNTQGYKNLVKLTTISHLQGFQGKGIFARPCINKELLEQ-YHEGLIVTSACLGGEIPQAILAGRPD  154 (874)
T ss_pred             --CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCCEEEECCCCCCHHHHHHHCCCHH
T ss_conf             --556677779972887999999999999987143578650577589999985-47994994587666277998679999


Q ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCHHHH-HHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             99999999987659868999943991158-99999999999818989980883007878899998766884698576531
Q 537021.9.peg.7  166 VAEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD  244 (1033)
Q Consensus       166 ~a~~~l~~l~~~Fgd~~ylEl~~~~~~e~-~~~~~l~~lA~~~~iPlVaTndv~Y~~~~D~~~h~iL~aI~~~~~l~~~~  244 (1033)
T Consensus       155 ~a~~~~~~~~~iFg~~~ylEiq~hg~~~~~~~n~~L~~lA~~~~iplVATndvhY~~~~D~~~~dvL~cI~~g~~l~~~~  234 (874)
T PRK09532        155 AARKVAKWYKDLFGDDFYLEIQDHGSQEDRIVNVEIVKIARELGIKIVATNDSHFISCYDVEAHDALLCIQTGKLITEDK  234 (874)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEECCCCEECCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             99999999998648878999974898588999999999999819998861865015754536999998886098644212


Q ss_pred             CCCCCCCCCCCCHHHHHHHCCH------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             0024534323434788751220------3589987886411100013322102345557568877689889998765410
Q 537021.9.peg.7  245 RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG  318 (1033)
Q Consensus       245 ~~~~~~~~yLks~eEM~~~f~~------~peAi~NT~~IAe~c~~~l~~~~~~lP~f~~p~~~~~~~~~~~~Lr~l~~~G  318 (1033)
T Consensus       235 r~~~~~~~ylks~~EM~~lF~d~~~~~~~~eAl~NT~~IA~~c~~~~~~~~~~lP~f~~p~g----~t~~~~L~~l~~~G  310 (874)
T PRK09532        235 RLRYSGTEYLKSAEEMRLLFRDHLPDDVIAEAIANTLEVADKIEPYNILGEPRIPNYPVPSG----HTADTYVEEVAWQG  310 (874)
T ss_pred             CCCCCHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC----CCHHHHHHHHHHHH
T ss_conf             23688878688999999987641441348999997899998710013128866888778789----98689999999975


Q ss_pred             HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHH
Q ss_conf             34201246432457838999998877898986063055788899999851047643344442046677655440375633
Q 537021.9.peg.7  319 LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL  398 (1033)
Q Consensus       319 l~~R~~~~~~~~~~~~~~y~~RLe~EL~vI~~~gf~~YFLiV~Div~~ak~~gI~vGpGRGSAagSLVaY~LgIT~VDPi  398 (1033)
T Consensus       311 l~~R~~~~~--~~~~~~~y~~RL~~EL~vI~~mgf~~YFLIV~D~v~~Ar~~gI~vGpGRGSaAGSLVaY~LgIT~VDPi  388 (874)
T PRK09532        311 LLERLKCKS--RAEVEPVYKERLEYELKMLQQMGFSTYFLVVWDYIKYARDNNIPVGPGRGSAAGSLVAYCLGITNIDPV  388 (874)
T ss_pred             HHHHCCCCC--CCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf             998706555--334779999999999999985487754149999999999769711578761143499997068767824


Q ss_pred             HCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             32310567621001457875333656878999999983038021554220778778899999997527998898865431
Q 537021.9.peg.7  399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL  478 (1033)
Q Consensus       399 ~~~LlFERFLnp~R~~~PDIDiDf~~~~R~~vi~y~~~kyG~~~va~i~t~~t~~~k~aird~~r~~g~~~~~~~~~~~~  478 (1033)
T Consensus       389 ~~~LLFERFLNpeR~smPDIDiDF~~~rReeVI~Yv~~KYG~~~VAqI~Tf~t~~ak~aiRDvgRvlg~p~~~~d~lak~  468 (874)
T PRK09532        389 HHGLLFERFLNPERKSMPDIDTDFCIERRDEMIKYVTEKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADKMAKL  468 (874)
T ss_pred             CCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf             26755220378877889998751770029999999997858577899985234243689999999849988899999963


Q ss_pred             CCCCCCCCCCHHHH----HCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHEECCCCCCCCCE
Q ss_conf             01458982443445----22988788643074202688987201122100244744033525666662001236768866
Q 537021.9.peg.7  479 IPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP  554 (1033)
Q Consensus       479 i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~leg~~r~~~~Ha~Gvvi~~~~l~~~~p~~~~~~~~~~  554 (1033)
T Consensus       469 ip~~~g~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~LeGlpR~~s~HAaGvVIs~~pL~~~vPl~~~~-~g~~  547 (874)
T PRK09532        469 IPVSRGKPTKLKVMISDETPEPEFKEKYDNDPRVRRWLDMAIRIEGTNKTFGVHAAGVVISSEPLDEIVPLQKNN-DGAV  547 (874)
T ss_pred             CCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCEEECC-CCCE
T ss_conf             874468852377875225759899976415899999999999883474420025660585277744226624779-8981


Q ss_pred             EEEEECHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHH-HCCCCCCCCCCCCH-------------------HHHHHHHHC
Q ss_conf             8851021334311232135654178999999998874-02543433234435-------------------889987620
Q 537021.9.peg.7  555 VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD-------------------HETYHLLTT  614 (1033)
Q Consensus       555 ~~q~d~~~~e~~gl~K~D~Lgl~~L~~i~~~~~~i~~-~~~~~d~~~ip~~D-------------------~~~~~l~~~  614 (1033)
T Consensus       548 vtQ~d~~d~E~~GLlK~D~LGL~~Lt~I~~a~~lI~~~~g~~~dl~~ip~dD~~~~~~~~~~~~~~ip~dd~~t~~ll~~  627 (874)
T PRK09532        548 ITQYFMEDLESLGLLKMDFLGLKNLTMIQKTADLIKENRGQRIDLDQLPLDERKALEIIAKGEAKKLPKDVQKTHQLLER  627 (874)
T ss_pred             EEEECHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf             36615765998499643720557688999999999983189878532885421121012333211367650899999863


Q ss_pred             CCCCHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHH--HHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCHH
Q ss_conf             1410122114534788887717404888876654114113420--03688850465785026966733410335530012
Q 537021.9.peg.7  615 KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ  692 (1033)
Q Consensus       615 g~t~GvFQ~es~~~~~~l~~~~p~~~~dl~~~~al~RPGp~~~--~~~yi~rk~g~e~~~~~hp~l~~iL~~T~Gv~vyQ  692 (1033)
T Consensus       628 g~T~GvFQ~ES~gm~~~l~~lkP~~f~Dlva~~ALyRPGP~~~gmi~~yi~rk~g~e~v~y~hp~Le~IL~~TyGV~vYQ  707 (874)
T PRK09532        628 GDLEGIFQLESSGMKQIVRDLKPSNIEDISSILALYRPGPLDAGLIPKFINRKHGREPIDYQHQLLEPILNETYGVLVYQ  707 (874)
T ss_pred             CCEEEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEH
T ss_conf             88558998568899999997699979998999874277877778548999851899888889978998744578756549


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             56898878863268413078897620121101677878999998624999999999999999750001331014788899
Q 537021.9.peg.7  693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI  772 (1033)
Q Consensus       693 EQvm~ia~~~ag~~~~ead~lRra~~kk~~~~~~~~~~~f~~g~~~~g~~~~~a~~i~~~i~~f~~Y~FnksHa~aya~~  772 (1033)
T Consensus       708 EQVMqia~~~AGfslgeAD~LRRAm~KK~~~~m~~~r~~Fi~ga~~~G~~~~~a~~if~~i~~Fa~Y~~--s~~~~~~~~  785 (874)
T PRK09532        708 EQIMKMAQDLAGYSLGEADLLRRAMGKKKISEMQKHREKFIDGAAKNGVPKKIAENLFDQMVKFAEYCL--SYDTEVLTV  785 (874)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHH--HHHHHHHHH
T ss_conf             999999999978992899999998727988999999999999999869999999999999998736199--999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             999999997302666777510023542025899988886368503552334
Q 537021.9.peg.7  773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT  823 (1033)
Q Consensus       773 ~y~~aylK~~yP~eF~aa~L~~~~~~~~~~~~~i~e~~~~gi~vl~PdIN~  823 (1033)
T Consensus       786 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (874)
T PRK09532        786 EYGPLPIGKIVEENIECTVYSVDPNGFVYTQPIAQWHQRGEQEVFEYELED  836 (874)
T ss_pred             HHHHHHHHHHCCHHHEEEECCCCCCCEECCCHHHHHHHHCCEEEEEEECCC
T ss_conf             753677632141322332224578862035333678871870489876158