HHsearch alignment for GI: peg_753 and conserved domain: TIGR00426
>TIGR00426 TIGR00426 competence protein ComEA helix-hairpin-helix repeat region; InterPro: IPR004509 This domain is found in competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This domain represents a region of two tandem copies of a helix-hairpin-helix domain, each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to this domain..
Probab=95.04 E-value=0.031 Score=37.44 Aligned_cols=42 Identities=29% Similarity=0.472 Sum_probs=35.6
Q ss_pred HHHCCCCHHHHHHHHHHH-HCCCCCCHHHHHHHCCCCCCCHHHHHH
Q ss_conf 685896989999999998-379999978999734824799899998
Q 537021.9.peg.7 840 AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLES 884 (1033)
Q Consensus 840 ~~Ikgvg~~~~~~Ive~r-~~g~f~sl~df~~rv~~~~~nk~~le~ 884 (1033)
T Consensus 21 ~~~~GvG~kKAeAIv~YREe~G~F~t~Edl~~-V--~GiG~~~~Ek 63 (70)
T TIGR00426 21 KALSGVGAKKAEAIVAYREEYGRFKTVEDLKK-V--SGIGEKLLEK 63 (70)
T ss_pred HHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHH-C--CCCCHHHHHH
T ss_conf 76428872378999887532779576222321-4--7876245555