>TIGR01405 polC_Gram_pos DNA polymerase III, alpha subunit, Gram-positive type; InterPro: IPR006308 These are the polypeptide chains of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence and poorly alignable. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0005737 cytoplasm.

Probab=100.00 E-value=0 Score=1027.49 Aligned_cols=796 Identities=23% Similarity=0.348 Sum_probs=661.4 Q ss_pred CHHHHHHCHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCC--CCEEEEEEEEEECCCCCCCCCC Q ss_conf 13343314447644329989999999978998899811651774999999999769--9638999999854766433445 Q 537021.9.peg.7 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPIIGCQLDIDMQDNLKMTNQ 88 (1033) Q Consensus 11 FvhLh~hS~ySlldg~~~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F~~ackk~g--IKPIiG~E~~v~~~~~~~~~~~ 88 (1033) T Consensus 112 RVEL~~HTkMS~mDaI~s~~e~v~~A~~wg~kaIAiTDh~~VQAfP~~y~~a~K~gPD~K~IYG~E~~lv~D~~Piv~n~ 191 (1264) T TIGR01405 112 RVELHFHTKMSQMDAITSVQEYVKQAKKWGHKAIAITDHGVVQAFPEAYKAAKKDGPDIKIIYGLEANLVDDRVPIVYNP 191 (1264) T ss_pred CEEEECCHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCCEECCHHHHHHHHHCCCCCEEEECCEEEEECCCCCEEECC T ss_conf 34541121201010457889999999975897589854873230058987786508972166252578604886637666 Q ss_pred CCCC------C--------------------------------------------------------------------- Q ss_conf 6566------6--------------------------------------------------------------------- Q 537021.9.peg.7 89 GKTP------F--------------------------------------------------------------------- 93 (1033) Q Consensus 89 ~~~~------~--------------------------------------------------------------------- 93 (1033) T Consensus 192 ~~~~~ldykl~DaTyVVfD~ETTGLsp~~d~iIE~gA~k~~nGk~ii~~~~~FikP~~~l~~~~~elT~ITq~ml~n~~~ 271 (1264) T TIGR01405 192 KDQKFLDYKLKDATYVVFDIETTGLSPQYDEIIEFGAVKVKNGKRIIDKFQFFIKPKEPLSAFVTELTGITQDMLENAPE 271 (1264) T ss_pred CCCCHHCEEECCCEEEEEEEEECCCCCCCCCEEEEEEEEEECCCEEEEEHHHHCCCCCCCCCCEEEECCCCHHHHCCCCC T ss_conf 34510002423620799603515888861424678758874685762312323288754675426624664797379841 Q ss_pred -------------------------------------------------------------------------------- Q ss_conf -------------------------------------------------------------------------------- Q 537021.9.peg.7 94 -------------------------------------------------------------------------------- 93 (1033) Q Consensus 94 -------------------------------------------------------------------------------- 93 (1033) T Consensus 272 ~~~vL~k~~~f~~d~ilVAHNGasFD~~Fl~~~~~k~~~~~~~~p~IDTL~Lar~lnP~y~sh~Lg~~~~Kl~v~~~~e~ 351 (1264) T TIGR01405 272 IEEVLEKFKEFLKDSILVAHNGASFDIGFLNTNFEKVGLEPLENPVIDTLELARALNPEYKSHRLGEIAKKLGVDLDDER 351 (1264) T ss_pred HHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCC T ss_conf 78999999997697588862761036688988987627742336511388999983731134454223332055215330 Q ss_pred --------------------------------------------------CCCCEEEEEECCHHHHHHHHHHHHHHHHCC Q ss_conf --------------------------------------------------677539999569689999999998997324 Q 537021.9.peg.7 94 --------------------------------------------------PTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 (1033) Q Consensus 94 --------------------------------------------------~~~~~lvlLAkN~~Gy~nL~kL~S~a~~~~ 123 (1033) T Consensus 352 ~HRA~YDa~~t~~vF~~~~~~~~e~gGi~~l~~lni~e~~~l~~~~~y~r~~~~~~~i~~kNq~GLKnLykLvS~s~~-~ 430 (1264) T TIGR01405 352 HHRADYDAEATAKVFIVMVEQLKEKGGITNLEELNIQELDKLSSEELYKRLRPNHIIILVKNQAGLKNLYKLVSISLT-K 430 (1264) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHCCHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHH-H T ss_conf 124334799999999999999875037211234057889842052345423745157877630347889999879986-5 Q ss_pred CCCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCHH-HHHHHHHHHHHHCCCCEEEEEECCCHH---------- Q ss_conf 877874007899986348988998197679678888779978-999999999876598689999439911---------- Q 537021.9.peg.7 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ-VAEKRLLTFKKLFGDRLYVNLQRHRGY---------- 192 (1033) Q Consensus 124 ~~~~~p~i~~~~L~e~~~egLIvlsg~~~g~i~~~l~~~~~~-~a~~~l~~l~~~Fgd~~ylEl~~~~~~---------- 192 (1033) T Consensus 431 Yfy~~Pri~~s~L~~-~~egLl~Gsac~~Gelf~a~l~~~~~~e~e~iaK~YD-------fIei~Plg~y~~l~~~e~~~ 502 (1264) T TIGR01405 431 YFYTRPRILRSLLKK-YREGLLIGSACSEGELFDALLSKTQDDELEEIAKRYD-------FIEIQPLGNYAHLIEKEQVK 502 (1264) T ss_pred HHCCCCCCCHHHHHH-HCCCEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHCC-------EEEECCCCCHHHHHHHCCCC T ss_conf 314689751788986-4387077177743227687433885899999875447-------45627876507898613787 Q ss_pred --HH--HHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHCCC-CCCCCC------CCCCCCCCCCCCHHHHH Q ss_conf --58--99999999999818989980883007878899998766884698-576531------00245343234347887 Q 537021.9.peg.7 193 --DR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQKD------RPRVTPDHYLKNRSEMV 261 (1033) Q Consensus 193 --e~--~~~~~l~~lA~~~~iPlVaTndv~Y~~~~D~~~h~iL~aI~~~~-~l~~~~------~~~~~~~~yLks~eEM~ 261 (1033) T Consensus 503 d~E~~~~~~~~li~~a~~lNK~Vv~tG~~hy~~~~d~i~r~il~~s~G~~~~~nr~~~~k~~~~~~~~P~~~~rTT~EML 582 (1264) T TIGR01405 503 DKEALKEIIKKLIKLAKELNKPVVATGDVHYIEPEDKIYRKILVASQGLENKLNRLANYKEDAREVYLPELHFRTTEEML 582 (1264) T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHH T ss_conf 77789999999999998619779996784217867876453100277888654766666543553338705861648899 Q ss_pred HHCCHH--HH------HHHHHHHHHHHHHHH-H-HH-HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 512203--58------998788641110001-3-32-2102345557568877689889998765410342012464324 Q 537021.9.peg.7 262 SIFSDL--PE------ALENTVEIARRCSFI-L-QV-HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330 (1033) Q Consensus 262 ~~f~~~--pe------Ai~NT~~IAe~c~~~-l-~~-~~~~lP~f~~p~~~~~~~~~~~~Lr~l~~~Gl~~R~~~~~~~~ 330 (1033) T Consensus 583 ~ef~fLgee~~~a~eiVveNtN~ia~~~e~~di~Pi~~~LytP~i---------eg~~e~~~~~~Y~~A~~iYGdpL--- 650 (1264) T TIGR01405 583 DEFSFLGEEKLLAREIVVENTNKIADQIEEDDIQPIKDKLYTPKI---------EGADEKIRDLTYEKAKKIYGDPL--- 650 (1264) T ss_pred HHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCEECCCCCCCCCC---------CCCCHHHHHHHHHHHHHHCCCCC--- T ss_conf 998740464676644200360257755130586333788887800---------38527899999999897427985--- Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHH----------- Q ss_conf 578389999988778989860630557888999998510476433444420466776554403756333----------- Q 537021.9.peg.7 331 GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399 (1033) Q Consensus 331 ~~~~~~y~~RLe~EL~vI~~~gf~~YFLiV~Div~~ak~~gI~vGpGRGSAagSLVaY~LgIT~VDPi~----------- 399 (1033) T Consensus 651 ---P~IVe~RieKEL~sII~nGF~ViYlIS~~LV~KS~~DGYlVG-SRGSVGSSlVAtl~gITEVNPL~PHY~Cp~Cky~ 726 (1264) T TIGR01405 651 ---PEIVEQRIEKELKSIIGNGFAVIYLISQLLVKKSLQDGYLVG-SRGSVGSSLVATLTGITEVNPLPPHYLCPNCKYS 726 (1264) T ss_pred ---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEC-CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEE T ss_conf ---689999999874565406626778999998887415884663-7743114578542166115757687508787355 Q ss_pred --------------------------------CCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECC Q ss_conf --------------------------------231056762100145787533365687899999998303802155422 Q 537021.9.peg.7 400 --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447 (1033) Q Consensus 400 --------------------------------~~LlFERFLnp~R~~~PDIDiDf~~~~R~~vi~y~~~kyG~~~va~i~ 447 (1033) T Consensus 727 Ef~~D~~~~~GfDLp~K~CP~Cgak~pl~kDG~~IPFETFLGF~GDKVPDIDLNFSGEYQ~~AH~~vk~lFGe~~~fRAG 806 (1264) T TIGR01405 727 EFVTDGSVGSGFDLPDKDCPKCGAKAPLKKDGQDIPFETFLGFKGDKVPDIDLNFSGEYQAKAHNYVKELFGEDHTFRAG 806 (1264) T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECC T ss_conf 30037877887768578888888777634573699850016778884686446787224778889999860897223146 Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC Q ss_conf 07787788999999975279988988654310145898244344522988788643074202688987201122100244 Q 537021.9.peg.7 448 TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527 (1033) Q Consensus 448 t~~t~~~k~aird~~r~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~leg~~r~~~~ 527 (1033) T Consensus 807 TIgTvAeKTAy-------GY----V-----------------K~Y~en~~~~~~~~r~---aei~rl~~~~tGvKRTTGQ 855 (1264) T TIGR01405 807 TIGTVAEKTAY-------GY----V-----------------KKYFENIIDQGKHYRD---AEIERLVQKCTGVKRTTGQ 855 (1264) T ss_pred CHHHHHHHHHH-------HH----H-----------------HHHHHHHHHCCCCCCC---HHHHHHHCCCCCCCCCCCC T ss_conf 51535534221-------02----5-----------------6667775422765550---4678765056322215786 Q ss_pred CCCEEEECCC--CHHHHEECCCCCCC---CCEEEEEECHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 7440335256--66662001236768---866885102133431123213565417899999999887402543433234 Q 537021.9.peg.7 528 HAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 (1033) Q Consensus 528 Ha~Gvvi~~~--~l~~~~p~~~~~~~---~~~~~q~d~~~~e~~gl~K~D~Lgl~~L~~i~~~~~~i~~~~~~~d~~~ip 602 (1033) T Consensus 856 HPGGIiivPk~~dvyDFtP~qyPAdD~~s~w~TTHF~fh~ihdn-lLKLDILGHDDPT~ikmL~DL---tG--Idp~~IP 929 (1264) T TIGR01405 856 HPGGIIIVPKEMDVYDFTPVQYPADDTNSDWKTTHFDFHSIHDN-LLKLDILGHDDPTMIKMLQDL---TG--IDPKTIP 929 (1264) T ss_pred CCCCEEEECCCEEEEECCCCCCCCCCCCCCCEECCCCHHCCCCC-EEEEEECCCCCHHHHHHHHHC---CC--CCCCCCC T ss_conf 88765887687016521777878788988515413240202785-564520488876899850001---67--5876788 Q ss_pred CCHHHHHHHHHCCCCCHHH--HCC-CH------------HHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHH-HHHHHHHC Q ss_conf 4358899876201410122--114-53------------47888877174048888766541141134200-36888504 Q 537021.9.peg.7 603 FDDHETYHLLTTKGTLGIF--QLE-SS------------GMRQALEGMQPDCIEDIIALVSLYRPGPIDNI-VVYNNRKN 666 (1033) Q Consensus 603 ~~D~~~~~l~~~g~t~GvF--Q~e-s~------------~~~~~l~~~~p~~~~dl~~~~al~RPGp~~~~-~~yi~rk~ 666 (1033) T Consensus 930 ~dD~~vm~~FSs~~~Lgv~p~~i~~~~TG~~GIPEFGT~FVR~ML~eTkPktFadLv~ISGL------SHGtDVWL~NA~ 1003 (1264) T TIGR01405 930 MDDKEVMKIFSSVKALGVTPEEILNEKTGTLGIPEFGTKFVRGMLEETKPKTFADLVRISGL------SHGTDVWLGNAQ 1003 (1264) T ss_pred CCCHHHHHHCCCCCCCCCCHHHHCCCCCCCEECCCCCCCCHHHHHHCCCCCCCHHHHEECCC------CCCCCHHHHHHH T ss_conf 88867875217876678737770785543312587565330410400689760113101254------267302268899 Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHH----HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC Q ss_conf 65785026966733410335530012568988788632684130----78897620121101677878999998624999 Q 537021.9.peg.7 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA----DVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 (1033) Q Consensus 667 g~e~~~~~hp~l~~iL~~T~Gv~vyQEQvm~ia~~~ag~~~~ea----d~lRra~~kk~~~~~~~~~~~f~~g~~~~g~~ 742 (1033) T Consensus 1004 ~l--I~~g~~~L~~VI~-------CRDDIM~YLI-~kGlep~~AF~IME~VRK--Gk~L~~~-~~-~~e~~~~mk~~~VP 1069 (1264) T TIGR01405 1004 DL--IKSGIKTLSDVIG-------CRDDIMVYLI-HKGLEPKLAFKIMEKVRK--GKGLKPS-KK-RAEYIELMKENKVP 1069 (1264) T ss_pred HH--HHCCCCCCCCEEE-------ECCHHHHHHH-HCCCCHHHHHHHHHHHCC--CCCCCCH-HH-HHHHHHHHHHCCCC T ss_conf 99--9615875010464-------1424578998-648885035575132115--6678854-66-89999999866897 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH---------------------- Q ss_conf 9999999999997500013310147888999999999973026667775100235420---------------------- Q 537021.9.peg.7 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------------------- 800 (1033) Q Consensus 743 ~~~a~~i~~~i~~f~~Y~FnksHa~aya~~~y~~aylK~~yP~eF~aa~L~~~~~~~~---------------------- 800 (1033) T Consensus 1070 eWYIeSc-~KIK----YmFPKAHAaAYVlMA~RiAyFKVhyPl~YYAaYFsiRa~~FD~~~m~~Gk~~ik~k~~El~~~~ 1144 (1264) T TIGR01405 1070 EWYIESC-LKIK----YMFPKAHAAAYVLMAWRIAYFKVHYPLEYYAAYFSIRADAFDLETMIKGKEFIKQKLKELNERE 1144 (1264) T ss_pred CHHHHHH-HHCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHH T ss_conf 1478752-2103----5661369999998888887887632278888664231100263543416689999999998874 Q ss_pred ----------------HHHHHHHHHHHCCCCCCCCCCCCCCEE-EEECCCE--EEEEHHHHCCCCHHHHHHHHHHH-HCC Q ss_conf ----------------258999888863685035523342100-3531986--98502685896989999999998-379 Q 537021.9.peg.7 801 ----------------KIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNR--IYYSLAAIKGVGTTTARHIMEAS-ADK 860 (1033) Q Consensus 801 ----------------~~~~~i~e~~~~gi~vl~PdIN~S~~~-f~~~~~~--Ir~Gl~~Ikgvg~~~~~~Ive~r-~~g 860 (1033) T Consensus 1145 ~~R~~~~~~~KEk~~~~~LEi~lEM~~RGF~~~~idl~~S~At~Fli~~~~~~LIpPF~~i~GlGe~vA~~Iv~ARq~Ek 1224 (1264) T TIGR01405 1145 KLRDQNKASPKEKDLLTVLEIVLEMLARGFKFQPIDLYKSQATEFLIEGDTKALIPPFNAIPGLGENVAESIVEARQNEK 1224 (1264) T ss_pred HHHHHHCCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEECCCHHHHHHHHHHHHHCCC T ss_conf 20322011210054325699999999634224787602115640377778831057610117746899999998643178 Q ss_pred CCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCC Q ss_conf 999978999734824799899998886767234790 Q 537021.9.peg.7 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 (1033) Q Consensus 861 ~f~sl~df~~rv~~~~~nk~~le~Li~aGAfD~~~~ 896 (1033) T Consensus 1225 ~F~S~eDL~kRt---ki~~~~iE~l~~~G~L~~lpE 1257 (1264) T TIGR01405 1225 PFLSVEDLKKRT---KISKTLIEKLDSLGVLDNLPE 1257 (1264) T ss_pred CCCCHHHHHHHC---CCCHHHHHHHHHCCCCCCCCC T ss_conf 747689876531---877779998876377778876

HHsearch alignment for GI: peg_753 and conserved domain: TIGR01405