HHsearch alignment for GI: peg_753 and conserved domain: cd04490
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=92.49 E-value=0.29 Score=29.26 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=28.7
Q ss_pred EEEEEEEEEEEEEECCCCCCEEEEEEEECCCCEEEEEEC
Q ss_conf 899999996112101588876999999849704999953
Q 537021.9.peg.7 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 (1033)
Q Consensus 994 ~v~iaG~V~~i~~~~TKkG~~mafltleD~~g~~e~~iF 1032 (1033)
T Consensus 1 ev~iIGmV~d~r--~TknG~~--~~~lED~TG~i~vl~~ 35 (79)
T cd04490 1 EVSIIGMVNDVR--STKNGHR--IVELEDTTGRITVLLT 35 (79)
T ss_pred CEEEEEEECCCE--ECCCCCE--EEEEECCCCEEEEEEE
T ss_conf 969999993327--6168878--9999879998999996