HHsearch alignment for GI: peg_753 and conserved domain: pfam07733
>pfam07733 DNA_pol3_alpha Bacterial DNA polymerase III alpha subunit.
Probab=100.00 E-value=0 Score=1103.26 Aligned_cols=378 Identities=58% Similarity=0.981 Sum_probs=366.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99987654103420124643245783899999887789898606305578889999985104764334444204667765
Q 537021.9.peg.7 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388 (1033)
Q Consensus 309 ~~Lr~l~~~Gl~~R~~~~~~~~~~~~~~y~~RLe~EL~vI~~~gf~~YFLiV~Div~~ak~~gI~vGpGRGSAagSLVaY 388 (1033)
T Consensus 1 ~~L~~l~~~g~~~r~~~--------~~~~~~Rl~~EL~vI~~~gf~~YFLiv~d~v~~a~~~gi~vgpgRGSaagSlV~y 72 (381)
T pfam07733 1 EYLRKLCEEGLKERYLP--------GIPVRERLEKELNVIIKMGFAGYFLIVWDLVKWAKDNGIPVGPGRGSAAGSLVAY 72 (381)
T ss_pred CHHHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHH
T ss_conf 97899999999987699--------8409999999999998779951479999999999987961379987379999999
Q ss_pred HHHCCCCCHHHCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 54403756333231056762100145787533365687899999998303802155422077877889999999752799
Q 537021.9.peg.7 389 ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 (1033)
Q Consensus 389 ~LgIT~VDPi~~~LlFERFLnp~R~~~PDIDiDf~~~~R~~vi~y~~~kyG~~~va~i~t~~t~~~k~aird~~r~~g~~ 468 (1033)
T Consensus 73 ~LgIT~vDPi~~~LlFERFLn~~R~~~PDIDiDf~~~~R~~vi~y~~~~yG~~~va~i~t~~t~~~ksairdv~r~---- 148 (381)
T pfam07733 73 LLGITEVDPLKHDLLFERFLNPERDSMPDIDIDFEDERREEVIDYVKEKYGEDRVAQIATFGTLAAKSAIRDVGRA---- 148 (381)
T ss_pred HHCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHH----
T ss_conf 8568240863147539987298889899823478853218999999998487878998516544799999999999----
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHEECCCC
Q ss_conf 88988654310145898244344522988788643074202688987201122100244744033525666662001236
Q 537021.9.peg.7 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 (1033)
Q Consensus 469 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~leg~~r~~~~Ha~Gvvi~~~~l~~~~p~~~~ 548 (1033)
T Consensus 149 -----------------------------------------~~~~~a~~leG~~R~~g~HaaGvVIs~~pl~~~~Pl~~~ 187 (381)
T pfam07733 149 -----------------------------------------ELIELAKKLEGLPRHTGQHAGGVVISDDPLTDFVPLQKP 187 (381)
T ss_pred -----------------------------------------HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHCCCEEC
T ss_conf -----------------------------------------999999983697665787888899868751221262358
Q ss_pred CCCCCEEEEEECHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHCCCHH
Q ss_conf 7688668851021334311232135654178999999998874-025434332344358899876201410122114534
Q 537021.9.peg.7 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 (1033)
Q Consensus 549 ~~~~~~~~q~d~~~~e~~gl~K~D~Lgl~~L~~i~~~~~~i~~-~~~~~d~~~ip~~D~~~~~l~~~g~t~GvFQ~es~~ 627 (1033)
T Consensus 188 ~~-~~~~tq~d~~~~E~~GLlK~D~LGL~~LsvI~~~~~~i~~~~~~~~dl~~ipldD~kt~~ll~~G~T~GiFQ~ES~g 266 (381)
T pfam07733 188 AD-DRPVTQFDKDDLEDLGLLKFDFLGLRTLTIIRDALDLIKENRGIDIDLATIPLDDPKTYKLLSSGDTLGVFQFESRG 266 (381)
T ss_pred CC-CCEEEEEEHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 99-98589720355887598225566888479999999999974498777776472469999998658712253436677
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCHHHHHH--HHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 7888877174048888766541141134200--36888504657850269667334103355300125689887886326
Q 537021.9.peg.7 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 (1033)
Q Consensus 628 ~~~~l~~~~p~~~~dl~~~~al~RPGp~~~~--~~yi~rk~g~e~~~~~hp~l~~iL~~T~Gv~vyQEQvm~ia~~~ag~ 705 (1033)
T Consensus 267 mr~~l~~~kP~~f~Dlva~~AL~RPGp~~~g~i~~Yi~rk~g~~~~~~~hp~l~~iL~~TyGvivYQEQiM~ia~~~aGf 346 (381)
T pfam07733 267 MRSMLKRLKPDTFEDLVALSALYRPGPMQGGNVDDYIKRKHGKEKIEYPHPDLEPILKETYGVIVYQEQVMQIAQILAGF 346 (381)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCCHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEHHHHHHHHHHHHCC
T ss_conf 88889863999888878876640677302116379999754997888899889987356689187689999999999798
Q ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 84130788976201211016778789999986249
Q 537021.9.peg.7 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 (1033)
Q Consensus 706 ~~~ead~lRra~~kk~~~~~~~~~~~f~~g~~~~g 740 (1033)
T Consensus 347 s~~eAD~lRram~KK~~~~m~~~~~~Fi~ga~~~G 381 (381)
T pfam07733 347 SLGEADLLRRAMGKKKPEEMEKLREKFIEGAKENG 381 (381)
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 97999999999738999999999999998888468