HHsearch results for GI: peg_753 and protein with PDBid: 2hnh_A
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, POL beta, PHP; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=100.00 E-value=0 Score=2098.63 Aligned_cols=887 Identities=45% Similarity=0.784 Sum_probs=842.6
Q ss_pred CCCCHHHHHHCHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCC
Q ss_conf 98813343314447644329989999999978998899811651774999999999769963899999985476643344
Q 537021.9.peg.7 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTN 87 (1033)
Q Consensus 8 ~~~FvhLh~hS~ySlldg~~~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F~~ackk~gIKPIiG~E~~v~~~~~~~~~~ 87 (1033)
.|+||||||||+||+|+|+++|++||++|+++||+||||||||||+|+++|+++|+++|||||+|||+++..+..
T Consensus 3 ~p~FvhLh~hS~yS~l~g~~~~eelv~~A~~~g~~alAiTD~~nl~G~v~F~~a~~k~gIKpIiG~e~~v~~~~~----- 77 (910)
T 2hnh_A 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLL----- 77 (910)
T ss_dssp CCCCCCCCBCCGGGSSSCCSCHHHHHHHHHHTTCSEEEECCBTCCTTHHHHHHHHHHHTCEEEEEEEEEEECTTT-----
T ss_pred CCCCHHHCCCCCCCHHCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCC-----
T ss_conf 899202207775803131369999999999859999999528859789999999997699827788999833877-----
Q ss_pred CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCHHHH
Q ss_conf 56566667753999956968999999999899732487787400789998634898899819767967888877997899
Q 537021.9.peg.7 88 QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167 (1033)
Q Consensus 88 ~~~~~~~~~~~lvlLAkN~~Gy~nL~kL~S~a~~~~~~~~~p~i~~~~L~e~~~egLIvlsg~~~g~i~~~l~~~~~~~a 167 (1033)
.+..+|++|||||++||+|||+|+|.+++++.++..|++++++|.+ +++||||+|||..|++.+++..++.+.+
T Consensus 78 -----~~~~~~l~lLAKN~~GykNL~kLiS~a~~~~~~~~~p~i~~~~L~~-~~egLIvlsg~~~g~i~~~l~~~~~~~a 151 (910)
T 2hnh_A 78 -----GDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE-LNEGLILLSGGRMGDVGRSLLRGNSALV 151 (910)
T ss_dssp -----TTCCEEEEEEECSHHHHHHHHHHHHHHHHHCCCTTCCCEETTHHHH-SCTTEEEECCGGGSHHHHHHHHTCHHHH
T ss_pred -----CCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH-CCCCEEEEECCCCCHHHHHHHCCCHHHH
T ss_conf -----7870688999799999999999999998704578888688999986-7999799858855789999876999999
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCHH-HHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9999999876598689999439911-589999999999981898998088300787889999876688469857653100
Q 537021.9.peg.7 168 EKRLLTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 (1033)
Q Consensus 168 ~~~l~~l~~~Fgd~~ylEl~~~~~~-e~~~~~~l~~lA~~~~iPlVaTndv~Y~~~~D~~~h~iL~aI~~~~~l~~~~~~ 246 (1033)
++++.+|+++||++||+|+|+|+.. ++..+..++++|+++++|+||||||||++++|+++|++|.||+.++++++.++.
T Consensus 152 ~~~i~~l~~iF~~~~yiEl~~~g~~~~~~~n~~li~la~~~~iplVATndv~Y~~~eD~~~~dvl~~I~~~~~l~d~~~~ 231 (910)
T 2hnh_A 152 DECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 (910)
T ss_dssp HHHHHHHHHHCTTSEEEEECCSSCTTHHHHHHHHHHHHHHHTCCEEECCCBCBSSGGGHHHHHHHHHHHHTCCTTCTTSC
T ss_pred HHHHHHHHHHCCCCEEEEHHCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCEEEEEHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999867850896112179855999999999999980996110044124305028899999997329745032221
Q ss_pred C-CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 2-453432343478875122035899878864111000133221023455575688776898899987654103420124
Q 537021.9.peg.7 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325 (1033)
Q Consensus 247 ~-~~~~~yLks~eEM~~~f~~~peAi~NT~~IAe~c~~~l~~~~~~lP~f~~p~~~~~~~~~~~~Lr~l~~~Gl~~R~~~ 325 (1033)
+ .++++||||++||.++|+++|+|++||..||++|++.++...+.+|+|++|++ +++++|++++.+|+.+||+.
T Consensus 232 ~~~~~~~ylks~eEM~~lF~d~peal~Nt~~Ia~~c~~~~~~~~~~lP~~~~~~~-----~~~~~l~~l~~~Gl~~r~~~ 306 (910)
T 2hnh_A 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGLEERLAF 306 (910)
T ss_dssp CCCCTTCBCCCHHHHHHHTTTCHHHHHHHHHHHHHCCCCCCCSSCCCCCCCCTTS-----CHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-----CCHHHHHHHHHHHHHHHHHH
T ss_conf 2378643489899999997451999997999988520244305566898876678-----84899999999889998641
Q ss_pred CCCC---CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCC
Q ss_conf 6432---4578389999988778989860630557888999998510476433444420466776554403756333231
Q 537021.9.peg.7 326 GAIA---KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 (1033)
Q Consensus 326 ~~~~---~~~~~~~y~~RLe~EL~vI~~~gf~~YFLiV~Div~~ak~~gI~vGpGRGSAagSLVaY~LgIT~VDPi~~~L 402 (1033)
.... .....++|++||++||+||.+|||++|||||||+|+|||++||+||||||||||||||||||||+||||+|||
T Consensus 307 ~~~~~~~~~~~~~~y~~RL~~EL~iI~~~gf~~YFLiv~diV~~Ak~~gi~vGpgRGSaagSLVaylLgIT~VDPi~~~L 386 (910)
T 2hnh_A 307 LFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDL 386 (910)
T ss_dssp HCCSHHHHHHHSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCBCSCCTTGGGCHHHHHTTSSCSCTTTTTC
T ss_pred CCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHCCCCCCCHHCCC
T ss_conf 26411220103499999999999999868980999999999999997894524688814889999997176779020388
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 05676210014578753336568789999999830380215542207787788999999975279988988654310145
Q 537021.9.peg.7 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 (1033)
Q Consensus 403 lFERFLnp~R~~~PDIDiDf~~~~R~~vi~y~~~kyG~~~va~i~t~~t~~~k~aird~~r~~g~~~~~~~~~~~~i~~~ 482 (1033)
+|||||||+|++|||||+||++++|++|++|+++|||.++||+|+||+|+++|+|+|||||++|+|+.++|+++|+||..
T Consensus 387 lFERFLn~~R~~~PDID~Df~~~~r~~v~~y~~~~yG~~~va~i~Tf~t~~~ksA~rdv~r~~g~~~~~~~~i~~~i~~~ 466 (910)
T 2hnh_A 387 LFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD 466 (910)
T ss_dssp CGGGTSCTTSCCCCCCCCEECGGGHHHHHHHHHHHHCGGGEEEECCEEECCHHHHHHHHHHHTTCCHHHHHHHHTTSCCC
T ss_pred CHHHHCCCCCCCCCCCCCCCCHHCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf 79997487667778888662211319999999999485514885310023688999999998589999999998526766
Q ss_pred CCCCCCHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHEECCCCCCCCCEEEEEECHH
Q ss_conf 89824434452298878864307420268898720112210024474403352566666200123676886688510213
Q 537021.9.peg.7 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562 (1033)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~leg~~r~~~~Ha~Gvvi~~~~l~~~~p~~~~~~~~~~~~q~d~~~ 562 (1033)
++.... .+...+++++.....++.++.++++|++|||++||+|+||||||||++||.+++|++++.+++.++|||||++
T Consensus 467 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~leG~~r~~~~Ha~Gvvi~~~~l~~~~p~~~~~~~~~~~~q~d~~~ 545 (910)
T 2hnh_A 467 PGMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSD 545 (910)
T ss_dssp TTCCHH-HHHHHCTHHHHHHHHCHHHHHHHHHHHHHTTCEEEECSSCCEEEECSSCGGGTCCEECCTTSCSCEESSCHHH
T ss_pred CCCCHH-HHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf 686456-6666465668877632589999999988258744434567879983887431355444788870587304753
Q ss_pred HHHHCCCHHHHHHHCCHHHHHHHHHHHHHH-C----CCCCCCCCCCCHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHCC
Q ss_conf 343112321356541789999999988740-2----54343323443588998762014101221145347888877174
Q 537021.9.peg.7 563 IEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-G----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 (1033)
Q Consensus 563 ~e~~gl~K~D~Lgl~~L~~i~~~~~~i~~~-~----~~~d~~~ip~~D~~~~~l~~~g~t~GvFQ~es~~~~~~l~~~~p 637 (1033)
+|++||+|||||||+|||+|++++++|+++ + ..+|+..||+||++||+||++|+|.||||+||+|||++|++++|
T Consensus 546 ~e~~gllK~D~Lgl~~lt~i~~~~~~i~~~~~~~~~~~~~~~~ip~~D~~~~~l~~~g~t~Gifq~es~~~~~~l~~~~P 625 (910)
T 2hnh_A 546 VEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQP 625 (910)
T ss_dssp HHHTTCEEEEECCCCHHHHHHHHHHHHHHTTTTTTCCCCCGGGCCSCCHHHHHHHHTTCCTTSTTCCSHHHHHHHHHHCC
T ss_pred HHHCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 31168731236514469999999999986317667886787548986589999760425578676788799999986599
Q ss_pred CHHHHHHHHHHHCCCHHHHHHH--HHHHHHCCCCCCCCC-----CHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 0488887665411411342003--688850465785026-----966733410335530012568988788632684130
Q 537021.9.peg.7 638 DCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 (1033)
Q Consensus 638 ~~~~dl~~~~al~RPGp~~~~~--~yi~rk~g~e~~~~~-----hp~l~~iL~~T~Gv~vyQEQvm~ia~~~ag~~~~ea 710 (1033)
++|+||++++||+||||+++++ .|++|++|+++++|+ ||.|++||++||||||||||||+|++.+||||+++|
T Consensus 626 ~~f~dl~~~~al~Rpgp~~~~~~~~~i~r~~~~~~~~y~~~~~~h~~l~~il~~T~Gv~vyqEqim~i~~~~ag~~~~~a 705 (910)
T 2hnh_A 626 DCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGA 705 (910)
T ss_dssp CSHHHHHHHHHHSSHHHHTTTHHHHHHHHHTTSSCCCSBCSSSBCGGGHHHHGGGTTCCCBHHHHHHHHHHHHCCCHHHH
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCHHHH
T ss_conf 87999999998127776334640378876058877677643325688999971457835539999867787669986789
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78897620121101677878999998624999999999999999750001331014788899999999997302666777
Q 537021.9.peg.7 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790 (1033)
Q Consensus 711 d~lRra~~kk~~~~~~~~~~~f~~g~~~~g~~~~~a~~i~~~i~~f~~Y~FnksHa~aya~~~y~~aylK~~yP~eF~aa 790 (1033)
|.+|||||||+.++|++.++.|++||.++|++++.|++||++|++||+||||||||+|||++|||+||||+|||+|||||
T Consensus 706 d~~Rka~~kk~~~~~~~~~~~f~~g~~~~g~~~~~a~~i~~~i~~fa~Y~FnksHa~aYa~~ay~~AylK~~yP~eF~~a 785 (910)
T 2hnh_A 706 DMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAA 785 (910)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 99998734467177899999999779984999999999999998874518778999999999999999987078999999
Q ss_pred HHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC-CEEEEEHHHHCCCCHHHHHHHHHHH-HCCCCCCHHHH
Q ss_conf 510023542025899988886368503552334210035319-8698502685896989999999998-37999997899
Q 537021.9.peg.7 791 SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDF 868 (1033)
Q Consensus 791 ~L~~~~~~~~~~~~~i~e~~~~gi~vl~PdIN~S~~~f~~~~-~~Ir~Gl~~Ikgvg~~~~~~Ive~r-~~g~f~sl~df 868 (1033)
+||+++++++++..++.||+++||+|+|||||+|.++|++++ +.||+||++|||||+++++.|+++| ++|||+|+.||
T Consensus 786 ~l~~~~~~~~k~~~~~~e~~~~gi~i~~pdin~S~~~~~~~~~~~i~~gl~~ikgig~~~a~~Iv~~R~~~~~f~s~~Df 865 (910)
T 2hnh_A 786 VMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDL 865 (910)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTCCEECCCTTTCBSSCEECTTSCEECBGGGSTTCCHHHHHHHHHHHHTTCCCSSHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCEEECCCCEEEECHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 81588999389999999999879979898203678845876899598325435998999999999989747998999999
Q ss_pred HHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9734824799899998886767234790389999989999999
Q 537021.9.peg.7 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911 (1033)
Q Consensus 869 ~~rv~~~~~nk~~le~Li~aGAfD~~~~~R~~ll~~i~~~~~~ 911 (1033)
+.|++.+.+|++++|.||+|||||+||.||++|++++++++++
T Consensus 866 ~~r~~~~~~~~~~~~~Li~~gafd~~~~~R~~ll~~l~~~~~~ 908 (910)
T 2hnh_A 866 CARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKA 908 (910)
T ss_dssp TTSSCSSSSCHHHHHHHHHTTTTTTTSSCHHHHHTTSSSSGGG
T ss_pred HHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9870646799999999987799746067899999989999984