RPSBLAST alignment for GI: peg_753 and conserved domain: TIGR01405

>gnl|CDD|162340 TIGR01405, polC_Gram_pos, DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model. Length = 1213
 Score =  127 bits (321), Expect = 1e-29
 Identities = 207/948 (21%), Positives = 339/948 (35%), Gaps = 243/948 (25%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
            ++ + L      K   P    I++      G + L +LVS + L        RI  S L+
Sbjct: 365  ELNNKLSSEELYKRLRPN--HIIIYAKNQAGLKNLYKLVS-ISLTKYFYTRPRILRSLLK 421

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNLQRHRGYDRY 195
            +   EGL++ +  S G +  A         E+  +   F ++     Y +L   R   + 
Sbjct: 422  KY-REGLLIGSACSEGELFDALLSKPDDELEEIAKRYDFIEIQPPGNYAHLIE-REQVKD 479

Query: 196  RES------QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRV 248
            +E+      ++++LA     P+VAT +  ++  ED     +L+A       +++   P+ 
Sbjct: 480  KEALKEIIKKLIELAKELNKPVVATGDVHYIEPEDKIYRKILVASQGLGNPLNRHFNPKE 539

Query: 249  TPDHYLKNRSEMVSIFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             P+ + +  +EM+  FS L E        ENT +IA +   I  +   +    IE     
Sbjct: 540  VPELHFRTTNEMLDEFSFLGEEKAYEIVVENTNKIADQIEEIQPIKDKLYTPKIEGA--- 596

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY----RQRLDFELNVIARMKFSGYFL 358
                 + ++R+               AK  +         QR++ EL  I    F+  +L
Sbjct: 597  -----DEKIRDLTYEN----------AKKIYGDPLPEIVEQRIEKELKSIIGNGFAVIYL 641

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
            I    +Q + ++   VG  RGS   S+ A    IT+++PL                    
Sbjct: 642  ISQLLVQKSLQDGYLVGS-RGSVGSSLVATMTGITEVNPLPPHYLCPNCKYSEFITDGSV 700

Query: 400  ---FSLL-------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
               F L                    FE FL      +PD D++F  + + +   YV+  
Sbjct: 701  GSGFDLPDKDCPKCGAPLKKDGQDIPFETFLGFKGDKVPDIDLNFSGEYQAKAHNYVKEL 760

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G +   +  T G++  K A   V +  +                           D  +
Sbjct: 761  FGEDHTFRAGTIGTVAEKTAYGYVKKYFE---------------------------DQGK 793

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-- 555
                   D  ++RL    Q   G+ R    H  GI+I        VP Y DV    PV  
Sbjct: 794  H----YRDAEIERL---VQGCTGVKRTTGQHPGGIII--------VPKYMDVYDFTPVQY 838

Query: 556  -----------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                       T F+   I    L+K D LG    T+++   D        +D   IP D
Sbjct: 839  PADDTNSDWKTTHFDFHSIHD-NLLKLDILGHDDPTMIKMLQDLTG-----IDPKTIPMD 892

Query: 605  DHET--------------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            D E                 +L   GTLGI +  +  +R  LE  +P    D++ +  L 
Sbjct: 893  DKEVMSIFSSPKALGVTPEEILEKTGTLGIPEFGTKFVRGMLEETKPKTFADLVRISGLS 952

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
                    V   N             LI   +K    VI  ++ +M +  +  G     A
Sbjct: 953  H----GTDVWLGN----------AQDLIKSGIKTLSDVIGCRDDIM-VYLIHKGLEPKLA 997

Query: 711  ----DVLRRAMGKKIKEEM------DKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
                + +R+  GK +K E       +K  E +I    K  I                 Y 
Sbjct: 998  FKIMEKVRK--GKGLKAEYIELMKENKVPEWYIESCLK--IK----------------YM 1037

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN---------VEKIKKFCQD--A 809
            F K+HAAAY +++++ A+ K HYP+E+ AA  ++              E IK+  ++   
Sbjct: 1038 FPKAHAAAYVLMAWRIAYFKVHYPLEYYAAYFSIRAKAFDLETMIKGKEFIKQKLEEINT 1097

Query: 810  RQFNIQIMPPSVNTPCV----------DFKVGDNRIYYSLA---------------AIKG 844
            R+   +  P   +   V           FK     +Y S A               AI G
Sbjct: 1098 RRKINKASPKEKDLLTVLEIVLEMMARGFKFQPIDLYKSQATEFLIEGNTLIPPFNAIPG 1157

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            +G   A  I+EA  +KPF S ED   R    K+++  +E L   G LD
Sbjct: 1158 LGENVANSIVEARNEKPFLSKEDLKKRT---KISKTHIEKLDSMGVLD 1202