RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= 537021.9.peg.753_1
(1033 letters)
>gnl|CDD|180192 PRK05673, dnaE, DNA polymerase III subunit alpha; Validated.
Length = 1135
Score = 1471 bits (3810), Expect = 0.0
Identities = 504/1031 (48%), Positives = 675/1031 (65%), Gaps = 20/1031 (1%)
Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
FVHL VHS YSLL+GA + ++ K A PA+A+TD NLF A+EF + A AGI+P
Sbjct: 1 RFVHLHVHSEYSLLDGAAKIKPLVKKAAELGMPAVALTDHGNLFGAVEFYKAAKGAGIKP 60
Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
IIGC+ + + + G + LL GY+ L +L SR YL Q
Sbjct: 61 IIGCEAYVAPEKKDD-VSGGGAYTH----LTLLAKNETGYRNLFKLSSRAYLEGQYGYKP 115
Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
RI WL E +EGLI L+G SG + A AE+ ++++FGDR Y+ L RH
Sbjct: 116 RIDREWLAE-HSEGLIALSGCPSGEVGTALLAGQYDEAEEAAAEYQEIFGDRFYLELMRH 174
Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
+R E +++LA LPLVATN+ +L+ ED EAH+ L+ +A + DR R
Sbjct: 175 GLPIERRVEHALLELAKELGLPLVATNDVHYLTPEDAEAHEALLCIAEGKTLDDPDRFRF 234
Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
+P+ YLK+ EM +F+DLPEAL+NTVEIA RC+ +++ P LPRF + + E
Sbjct: 235 YSPEQYLKSAEEMRELFADLPEALDNTVEIAERCNVEVRLGKPFLPRFPTPDGET----E 290
Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
E+ LR +A GLE RLA + +Y +RL++EL+VI +M F GYFLIVADFIQWA
Sbjct: 291 EDYLRKEAKEGLEERLAFLFPDEE--RPEYVERLEYELDVIIQMGFPGYFLIVADFIQWA 348
Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
K N IPVGPGRGSGAGS+ AYAL ITD+DPLRF LLFERFLNP+R+SMPDFDIDFCQDRR
Sbjct: 349 KDNGIPVGPGRGSGAGSLVAYALGITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQDRR 408
Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
DEVIRYV KYG + VAQIITFG+++AKA +RDVGR L MPY VDR+ KLIP DP +
Sbjct: 409 DEVIRYVAEKYGRDAVAQIITFGTMKAKAVIRDVGRVLGMPYGFVDRITKLIPPDPGITL 468
Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
+ +A ++ RE +DP V RL+++++KLEGL R+A HAAG+VI PL+ VP+YR
Sbjct: 469 A-KAYEEEPELRELYESDPEVKRLIDMARKLEGLTRNAGVHAAGVVISPTPLTDFVPLYR 527
Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDH 606
D S +PVTQF+MK +E AGL+KFDFLGL+TLT++ +L + +RG+ VDL IP DD
Sbjct: 528 DPDSGMPVTQFDMKDVEAAGLVKFDFLGLRTLTIIDDALKLIKKRRGIDVDLEAIPLDDP 587
Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664
+TY LL TLG+FQLES GMR L+ ++PDC EDIIALV+LYRPGP++ I + +R
Sbjct: 588 KTYELLQRGETLGVFQLESRGMRDLLKRLKPDCFEDIIALVALYRPGPMESGMIPNFIDR 647
Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
K+G+E+I HP ++P+LKET G+I+YQEQVMQIAQ+L+GYSL AD+LRRAMGKK EE
Sbjct: 648 KHGREEIEYPHPELEPILKETYGIIVYQEQVMQIAQVLAGYSLGGADLLRRAMGKKKPEE 707
Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
M KQ+E F+ GA KNGI + A IF+LL KFA YGFNKSHAAAYA++SYQTA++K HYP
Sbjct: 708 MAKQREIFVEGAKKNGIDEEAADAIFDLLEKFAGYGFNKSHAAAYALVSYQTAYLKAHYP 767
Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
EF+AA +T +MDN +K+ + + R+ I+++PP VN DF V D I Y L AIKG
Sbjct: 768 AEFMAALLTSDMDNTDKVAVYLDECRRMGIKVLPPDVNESLYDFTVVDGDIRYGLGAIKG 827
Query: 845 VGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
VG I+EA + PF L DFC+RVD KK+N+RVLESL+ AGA D G +R LL
Sbjct: 828 VGEGAVEAIVEAREEGGPFKDLFDFCARVDLKKVNKRVLESLIKAGAFDSLGPNRAALLA 887
Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFY 962
SL++ A +K + ++F D ++++ + + E+ LG Y
Sbjct: 888 SLEDAVDAADQHKKAEASGQFDLFGGLGEEPEDVEVSVPDVEEWDKKEKLAGERETLGLY 947
Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
SGHPLD Y+ LR++ + T G+ + +A +VVS +++ T++G+++ VT +
Sbjct: 948 LSGHPLDGYEDELRRLRDTRLADLEPTEGGSVVTVAGLVVSVRRRVTKRGNKMAIVTLED 1007
Query: 1023 PAKEYEANFFP 1033
+ E F
Sbjct: 1008 LSGRIEVMLFS 1018
>gnl|CDD|161945 TIGR00594, polc, DNA-directed DNA polymerase III (polc). This family
is based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1022
Score = 1068 bits (2763), Expect = 0.0
Identities = 455/1035 (43%), Positives = 646/1035 (62%), Gaps = 26/1035 (2%)
Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-AAGIQP 69
FVHL VHS YSLL+GA + ++ K PA+A+TD N+F A+EF KAC AGI+P
Sbjct: 1 FVHLHVHSDYSLLDGAAKIKPLVKKAKELGMPALALTDHGNMFGAVEF-YKACKKAGIKP 59
Query: 70 IIGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
IIGC+ + K ++GK + ++LL GY+ L++L S YL +
Sbjct: 60 IIGCEAYVAPGSRFDKKRISKGKEAYH----LILLAKNNTGYRNLMKLSSLAYLEGFYYK 115
Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
RI L+E EGLI L+ SG + ++AE+ L ++++FGD Y+ LQ
Sbjct: 116 P-RIDKELLEEHS-EGLIALSACLSGEVPYLLLLGEERLAEEAALKYQEIFGDDYYLELQ 173
Query: 188 RHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
H E +++++ +PLVATN+ +++ ED AH++L+ + +S R
Sbjct: 174 DHGIPEQRVVNE-ALLEISEELGIPLVATNDVHYINPEDAHAHEILLCIQTGKTLSDPKR 232
Query: 246 PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRC-SFILQVHAPILPRFIEKECDDI 303
+ + + YLK+ EM +F+D+PEAL NTVEIA RC +++ P LP +
Sbjct: 233 LKFYSDEFYLKSPEEMAELFADIPEALANTVEIAERCNLVDVKLGPPRLPSYQIPPDF-- 290
Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
+E+ LR+ A GL RLA G AQ Y++RL++EL+VI M F GYFLIV DF
Sbjct: 291 -TSQEDYLRHLADEGLRERLAAGPPGYKRRAQ-YKERLEYELDVINSMGFPGYFLIVWDF 348
Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
I+WAK + IPVGPGRGS AGS+ AYAL ITDIDP++ LLFERFLNP+R+SMPD DIDFC
Sbjct: 349 IKWAKDHGIPVGPGRGSAAGSLVAYALKITDIDPIKHGLLFERFLNPERISMPDIDIDFC 408
Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
+RRDEVI YV +KYGH+ VAQIITFG+++AKAALRDV R L +PY++ DR+ KLIP P
Sbjct: 409 DERRDEVIEYVADKYGHDNVAQIITFGTMKAKAALRDVARVLDIPYAEADRIAKLIPPRP 468
Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
+ +A+ + R+ DP V +L+++++KLEGL R+A HAAG+VI PL+ V
Sbjct: 469 GKTLK-EALEASPQLRQLYEEDPEVKQLIDMARKLEGLNRNAGVHAAGVVISSEPLTDYV 527
Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
P+Y+D TQ++M +E GL+K DFLGLKTLTL+Q + + + +RG+ +D++ IP
Sbjct: 528 PLYKDKEGGAISTQYDMDDLEAVGLLKMDFLGLKTLTLIQDATELIRKRRGIDLDIASIP 587
Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
DD +T+ LL T G+FQLES GM+ L+ ++PD EDIIA+ +LYRPGP+++ ++
Sbjct: 588 LDDKKTFSLLQEGDTTGVFQLESRGMQDLLKRLKPDGFEDIIAVNALYRPGPMESGMIPD 647
Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
+ +RK+G+E I HPL++P+LKET GVI+YQEQVMQIAQ L+G+SL EAD+LRRAMGKK
Sbjct: 648 FIDRKHGREPIEYPHPLLEPILKETYGVIVYQEQVMQIAQRLAGFSLGEADLLRRAMGKK 707
Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
EEM K++E+F+ GA KNG IA N+F+L+ KFA YGFNKSHAAAY +ISYQTA++K
Sbjct: 708 KAEEMAKEREKFVEGAEKNGYDPEIAENLFDLIEKFAGYGFNKSHAAAYGMISYQTAYLK 767
Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
+YP EF+AA +T E++++EK+ + +A++ I+++PP +N DF V D I Y L
Sbjct: 768 ANYPAEFMAALLTSEINDIEKVAVYIAEAKKMGIEVLPPDINESGQDFAVEDKGIRYGLG 827
Query: 841 AIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
AIKGVG + + I+E PF SL DF +RVD KKLN++VLE+L+ AGA D G +R
Sbjct: 828 AIKGVGESVVKSIIEERNKNGPFKSLFDFINRVDFKKLNKKVLEALIKAGAFDSLGPNRK 887
Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
LL SLD+ +K ++F A +GT + + E+
Sbjct: 888 TLLASLDDALDAVSRKKKAEALGQNSLFGALSEGTKPEYVFFPPDEEWPDKKLLALEKET 947
Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGW 1017
LG Y SGHPLD Y+ L+ E + + +R + S ++K T K G + +
Sbjct: 948 LGLYVSGHPLDAYEKALKNTATPAAIEDLEAPNDSQVRTLGGLNSVKKKITTKNGKPMAF 1007
Query: 1018 VTFSEPAKEYEANFF 1032
+ + E F
Sbjct: 1008 LQLEDETGSIEVVVF 1022
>gnl|CDD|180713 PRK06826, dnaE, DNA polymerase III DnaE; Reviewed.
Length = 1151
Score = 1003 bits (2596), Expect = 0.0
Identities = 410/1041 (39%), Positives = 626/1041 (60%), Gaps = 65/1041 (6%)
Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
SFVHL VH+ YSLL+G+ + +++ + +IAITD ++ ++F + A G
Sbjct: 1 MKMSFVHLHVHTEYSLLDGSARIKDLIKRAKELGMDSIAITDHGVMYGVVDFYKAAKKQG 60
Query: 67 IQPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
I+PIIGC++ + D K + + +VLL GY+ L+++VS+ +
Sbjct: 61 IKPIIGCEVYVAPRSRFD--KEPDIDNETY----HLVLLAKNETGYKNLMKIVSKAFT-- 112
Query: 124 QG---KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179
+G K R+ L+E +EGLI L+ +G + R + + A++ L +K +FG
Sbjct: 113 EGFYYKP--RVDHELLKEH-SEGLIALSACLAGEVPRYILKGNYEKAKEAALFYKDIFGK 169
Query: 180 DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
+ Y+ LQ H G R ++++L+ +PLVATN+ ++ +ED +AHDVL+ +
Sbjct: 170 ENFYLELQDH-GIPEQRKVNEELIKLSKELGIPLVATNDVHYIRKEDAKAHDVLLCIQTG 228
Query: 238 TVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
V ++R R D YLK+ EM +FS +PEALENTV+IA RC+ + LP+F
Sbjct: 229 KTVDDENRMRFPSDEFYLKSPEEMYELFSYVPEALENTVKIAERCNVEFEFGKSKLPKFP 288
Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
E + LR GL+ R + ++ +RL++EL+VI +M + Y
Sbjct: 289 LPE----GYDPYEYLRELCYEGLKKRYPNPS-------EELIERLEYELSVIKQMGYVDY 337
Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
FLIV DFI++A++N I VGPGRGS AGS+ AY L IT IDP++++LLFERFLNP+R+SMP
Sbjct: 338 FLIVWDFIRFARENGIMVGPGRGSAAGSLVAYTLGITKIDPIKYNLLFERFLNPERVSMP 397
Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
D DIDFC +RR EVI YV KYG +RVAQIITFG++ A+AA+RDVGRAL PY++VDR+
Sbjct: 398 DIDIDFCYERRQEVIDYVVEKYGKDRVAQIITFGTMAARAAIRDVGRALNYPYAEVDRIA 457
Query: 477 KLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
K+IP + +++ +A+ + +EA D V L++ ++ LEGL RHASTHAAG+VI
Sbjct: 458 KMIPTELG--ITIDKALELNPELKEAYENDERVRELIDTARALEGLPRHASTHAAGVVIS 515
Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
PL + VP+ ++ VTQF M +E+ GL+K DFLGL+TLT+++ ++D + + RG+
Sbjct: 516 SEPLVEYVPLQKN--DGSIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDAVDLIKKNRGI 573
Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
++DL I +DD + Y ++ T+G+FQLES+GMR ++ ++PD +EDIIA +SLYRPGP
Sbjct: 574 EIDLDKIDYDDKKVYKMIGEGKTVGVFQLESAGMRSFMKELKPDSLEDIIAGISLYRPGP 633
Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
+D+I Y KN EKI +HP ++P+LK T G I+YQEQVMQI + L+GYS+ +D++R
Sbjct: 634 MDSIPRYIKNKNNPEKIEYLHPKLEPILKVTYGCIVYQEQVMQIVRDLAGYSMGRSDLVR 693
Query: 715 RAMGKKIKEEMDKQKERFISGA--------SKNGISKTIAVNIFELLAKFADYGFNKSHA 766
RAM KK + M+++++ FI G +NGI + A IF+ + FA Y FNKSHA
Sbjct: 694 RAMSKKKHDVMEEERKNFIYGIVDEGGPGCIRNGIDEETANKIFDSMMDFASYAFNKSHA 753
Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
AAYAV++YQTA++K +YPVEF+AA + M N +K+ + ++ R+ I+++PP +N
Sbjct: 754 AAYAVVAYQTAYLKRYYPVEFMAALLNSVMGNSDKVAFYIEECRRLGIEVLPPDINESYS 813
Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESL 885
F V ++I + LAA+K VG I+E K F SL DFC RVD+ ++N+R +ESL
Sbjct: 814 KFTVEGDKIRFGLAAVKNVGENAIDSIVEEREKKGKFKSLVDFCERVDTSQINKRAVESL 873
Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITL--- 940
+ AGA D G R QLL + I K ++F E+ S +I
Sbjct: 874 IKAGAFDSLGVYRSQLLAVYEKILDSISKQRKKNIEGQISLFDLIGEEEESSLEIKYPDI 933
Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK--------MGIKGYEESVATIR- 991
++F + E+ +LG Y SGHPL+ Y+ L+K + E+ + ++
Sbjct: 934 KEFDKKE---LLAMEKEMLGLYISGHPLEEYEETLKKQTSATISDIISDEEEDGESKLKD 990
Query: 992 GNNIRLAAMVVSKQQKKTRKG 1012
G+ + + ++ ++K TR
Sbjct: 991 GDKVIIGGIITEVKRKTTRNN 1011
>gnl|CDD|168927 PRK07374, dnaE, DNA polymerase III subunit alpha; Validated.
Length = 1170
Score = 814 bits (2105), Expect = 0.0
Identities = 414/1065 (38%), Positives = 619/1065 (58%), Gaps = 66/1065 (6%)
Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
+FV L HS YSLL+GA L ++++ PAIA+TD ++ A+E + GI+P
Sbjct: 2 AFVPLHNHSDYSLLDGASQLPKMVERAKELGMPAIALTDHGVMYGAIELLKLCKGKGIKP 61
Query: 70 IIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
IIG ++ ID K +V+L A GY+ L++L + +L
Sbjct: 62 IIGNEMYVINGSIDDPQPKKEKRY---------HLVVLAKNATGYKNLVKLTTISHL--N 110
Query: 125 GKQS----VRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
G + R C+ L + +EGLI+ T G I +A VA +K++FG
Sbjct: 111 GMRGRGIFSRPCIDKELLKQYSEGLIVSTACLGGEIPQAILRGRPDVARDVAAWYKEVFG 170
Query: 180 DRLYVNLQRHRGY--DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
D Y+ +Q H G DR ++V++A + L+ATN++ +LS+ D EAHD L+ V
Sbjct: 171 DDFYLEIQDH-GSIEDRIVNVELVRIAKELGIKLIATNDAHYLSKNDVEAHDALLCVLTG 229
Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPI 291
++S + R R T Y+K+ EM+ +F D + EA+ NTVE+A + +
Sbjct: 230 KLISDEKRLRYTGTEYIKSEEEMLRLFRDHLDPEVIQEAIANTVEVAEKVEEYDILGTYR 289
Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
+PRF E + L GL RL ++ + ++Y++RL +EL +I +M
Sbjct: 290 MPRFPIPE----GHTAVSYLTEVTEQGLLKRLKLNSLDE--IDENYKERLSYELKIIEQM 343
Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
F YFL+V D+I++A++ IPVGPGRGS AGS+ AYAL IT+IDP++ LLFERFLNP+
Sbjct: 344 GFPTYFLVVWDYIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVKNGLLFERFLNPE 403
Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
R SMPD D DFC +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY +
Sbjct: 404 RKSMPDIDTDFCIERRGEVIDYVTRRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGE 463
Query: 472 VDRLCKLIPNDPAHPVSLQA-IADDS---RFREARLADPSVDRLLEISQKLEGLYRHAST 527
DRL KLIP P L+A I +S FRE DP V + ++++ ++EG +
Sbjct: 464 ADRLAKLIPVVRGKPAKLKAMIGKESPSPEFREKYEKDPRVKKWVDMAMRIEGTNKTFGV 523
Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
HAAG+VI PL +LVP+ R+ + +TQ+ M+ IE GL+K DFLGLK LT+++K+L+
Sbjct: 524 HAAGVVIASDPLDELVPLQRNNDGQV-ITQYFMEDIESLGLLKMDFLGLKNLTMIEKTLE 582
Query: 588 FLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIA 645
+ Q G ++D +P DD +T+ LL +G L GIFQLESSGMRQ + ++P +EDI +
Sbjct: 583 LVEQSTGERIDPDNLPLDDEKTFELL-ARGDLEGIFQLESSGMRQVVRDLKPSSLEDISS 641
Query: 646 LVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
+++LYRPGP+D I + NRK+G+E I HPL++P+L ET G+++YQEQ+M+IAQ L+
Sbjct: 642 ILALYRPGPLDAGLIPKFINRKHGREAIDFAHPLLEPILTETYGIMVYQEQIMKIAQDLA 701
Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
GYSL +AD+LRRAMGKK EM K + F+ GASK G+ + +A +F+ + FA+Y FNK
Sbjct: 702 GYSLGQADLLRRAMGKKKVSEMQKHRGIFVEGASKRGVDEKVADELFDQMVLFAEYCFNK 761
Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
SH+ AY ++YQTA++K HYPV ++AA +T+ + +K++++ + I++MPP +N
Sbjct: 762 SHSTAYGAVTYQTAYLKAHYPVAYMAALLTVNAGSSDKVQRYISNCNSMGIEVMPPDINR 821
Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVL 882
+DF NRI + L+A+K +G R+I+ A +D PF SL D C R+ S LNRR L
Sbjct: 822 SGIDFTPKGNRILFGLSAVKNLGDGAIRNIIAARDSDGPFKSLADLCDRLPSNVLNRRSL 881
Query: 883 ESLVFAGALDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSD 936
ESL+ GALD F +R QL+ LD + +A ++R + N+F E+ +D
Sbjct: 882 ESLIHCGALDAFSPNANRAQLIADLDLVLDWASSRARDRASGQGNLFDLLAGSEEEASND 941
Query: 937 KITLEKFS-VENSS----VRFENEQRVLGFYFSGHPLDVYKP---ILRKMGIKGYEESVA 988
+ K + V + ++ E E +LGFY S HPL +L + + EE
Sbjct: 942 LSSAPKAAPVPDYPPTEKLKLEKE--LLGFYLSDHPLKQLTEPAKLLAPISLSSLEEQPD 999
Query: 989 TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
+ + AM+ +Q TRKG R+ + + EA FP
Sbjct: 1000 KAK---VSAIAMIPEMKQVTTRKGDRMAILQLEDLTGSCEAVVFP 1041
>gnl|CDD|180749 PRK06920, dnaE, DNA polymerase III DnaE; Reviewed.
Length = 1107
Score = 811 bits (2097), Expect = 0.0
Identities = 376/1039 (36%), Positives = 601/1039 (57%), Gaps = 71/1039 (6%)
Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-GIQ 68
FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F KAC GI
Sbjct: 2 KFVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPF-YKACKKHGIH 60
Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
PIIG I + + + +P +VLL GYQ L+++ S + K
Sbjct: 61 PIIGLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSSI----MTKSK 105
Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187
I WL +GLI ++ G G I++ + AE+ ++ +FG+ + +
Sbjct: 106 EGIPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFGNFYMSLQHH 164
Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
+ +E ++ + + +P+VATN+ ++++ D H+ L++V T ++ DRPR
Sbjct: 165 AIQDELLLQE-KLPEFSNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPR 223
Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
+ T +YLK+ EM ++FS +PEA+ NTVEIA RC + H LP+F +
Sbjct: 224 LKTDQYYLKSSDEMEALFSHVPEAIYNTVEIAERCRVEIPFHVNQLPKFPVPS----NET 279
Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
+ LR GL+ R G + + RL+ ELNVI+RM FS YFLIV DF+++
Sbjct: 280 ADMYLRRVCEEGLQKR-------YGTPKEVHINRLNHELNVISRMGFSDYFLIVWDFMKY 332
Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R
Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDTR 392
Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+
Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450
Query: 487 VSLQAIADDSRFREARLADPSVDRLL----------EISQKLEGLYRHASTHAAGIVIGD 536
++L ++A S+ + EI++++EGL RH S HAAG+++
Sbjct: 451 ITL---------KDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQ 501
Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVK 595
PL+ V + ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ Q+ G +
Sbjct: 502 EPLTGSVAI-QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIEQKTGKE 560
Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
+D+ +P D +T+ LL T G+FQLESSGMR L G++P+ EDI+A+ SLYRPGP+
Sbjct: 561 IDIRNLPLQDEKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPM 620
Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
+ I + K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRR
Sbjct: 621 EQIPTFIESKHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRR 680
Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
A+ KK ++ +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ
Sbjct: 681 AVSKKNRDILDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQ 740
Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
A++K +Y +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I
Sbjct: 741 LAYLKANYTLEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAI 800
Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
YSL +I+ +G T + E K F+ L +FC R+ SK + R LE+ V++G D FG
Sbjct: 801 RYSLLSIRNIGMATVTALYEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFG 860
Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFEN 954
SR L +SL +YA ++ + E+ +F +++ EK
Sbjct: 861 VSRTNLWKSLKGALEYANLARDLGDAVPKSKYVQGEELSFIEQLNKEK------------ 908
Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
VLGFY S +P Y + +++ I +++ + R + S + +T+KG +
Sbjct: 909 --EVLGFYLSSYPTAQYVKLAKELEIPSLAQAMRHKKK-VQRAIVYITSVKVIRTKKGQK 965
Query: 1015 IGWVTFSEPAKEYEANFFP 1033
+ ++TF + E EA FP
Sbjct: 966 MAFITFCDQNDEMEAVVFP 984
>gnl|CDD|181933 PRK09532, PRK09532, DNA polymerase III subunit alpha; Reviewed.
Length = 874
Score = 609 bits (1573), Expect = e-174
Identities = 326/817 (39%), Positives = 481/817 (58%), Gaps = 74/817 (9%)
Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
SFV L +HS YSLL+GA L ++D+ PAIA+TD ++ A+E + GI+P
Sbjct: 2 SFVGLHIHSDYSLLDGASQLPALVDRAIELGMPAIALTDHGVMYGAIELLKVCRNKGIKP 61
Query: 70 IIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
IIG ++ DI+ Q + +Q V+L +GY+ L++L + +L Q
Sbjct: 62 IIGNEMYVINGDIEKQKRRRKYHQ-----------VVLAKNTQGYKNLVKLTTISHL--Q 108
Query: 125 GKQS----VRICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
G Q R C++ L E EGLI+ + G I +A A K +KKLFG
Sbjct: 109 GVQGKGIFARPCINKELLEQYHEGLIVTSACLGGEIPQAILSGRPDAARKVAKWYKKLFG 168
Query: 180 DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
D Y+ +Q H DR ++V++A + ++ATN+S F+S D EAHD L+ +
Sbjct: 169 DDFYLEIQDHGSQEDRIVNVEIVKIARELGIKIIATNDSHFISCYDVEAHDALLCIQTGK 228
Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCSFILQVHAPIL 292
++++ R R + YLK+ EM +F D LP EA+ NT+E+A + + P +
Sbjct: 229 LITEDKRLRYSGTEYLKSAEEMRLLFRDHLPDDVIAEAIANTLEVADKIEPYNILGEPRI 288
Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
P + + + A GL RL + ++ Y++RL++EL ++ +M
Sbjct: 289 PNYPVPSGHT----PDTYVEEVAWQGLLERLNCKSRSE--VEPVYKERLEYELKMLQQMG 342
Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
FS YFL+V D+I++A+ NNIPVGPGRGS AGS+ AY L IT+IDP+ LLFERFLNP+R
Sbjct: 343 FSTYFLVVWDYIKYARDNNIPVGPGRGSAAGSLVAYCLKITNIDPVHHGLLFERFLNPER 402
Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
SMPD D DFC +RRDE+I+YV KYG +RVAQIITF + +KA L+DV R L +PY +
Sbjct: 403 KSMPDIDTDFCIERRDEMIKYVTEKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEA 462
Query: 473 DRLCKLIPNDPAHPVSLQA-IADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTH 528
D++ KLIP P L+ I+D++ F+E DP V R L+++ ++EG + H
Sbjct: 463 DKMAKLIPVSRGKPTKLKVMISDETPEPEFKEKYDNDPRVRRWLDMAIRIEGTNKTFGVH 522
Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
AAG+VI PL ++VP+ ++ + +TQ+ M+ +E GL+K DFLGL+ LT +QK+ D
Sbjct: 523 AAGVVISSEPLDEIVPLQKNNDGAV-ITQYFMEDLESLGLLKMDFLGLRNLTTIQKTADL 581
Query: 589 LAQ-RGVKVDLSLIPFDDH-------------------ETYHLLTTKGTLGIFQLESSGM 628
+ + RGV++DL +P D+ +T+ LL GIFQLESSGM
Sbjct: 582 IKENRGVEIDLDQLPLDERKALKILAKGEAKKLPKDVQKTHKLLERGDLEGIFQLESSGM 641
Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
+Q + ++P IEDI ++++LYRPGP+D I + NRK+G+E I H L++P+L ET
Sbjct: 642 KQIVRDLKPSNIEDISSILALYRPGPLDAGLIPKFINRKHGREPIDYEHQLLEPILNETY 701
Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
GV++YQEQ+M++AQ L+GYSL EAD+LRRAMGKK EM K +E+FI GA+KNG+SK +A
Sbjct: 702 GVLVYQEQIMKMAQDLAGYSLGEADLLRRAMGKKKISEMQKHREKFIDGAAKNGVSKKVA 761
Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
N+F+ + KFA+Y +SY T + Y
Sbjct: 762 ENLFDQMVKFAEY-----------CLSYDTEVLTVEY 787
>gnl|CDD|180857 PRK07135, dnaE, DNA polymerase III DnaE; Validated.
Length = 973
Score = 608 bits (1571), Expect = e-174
Identities = 302/965 (31%), Positives = 496/965 (51%), Gaps = 101/965 (10%)
Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
++L ++ YS L + L++++ + + +TD NN+F +F + I+PI
Sbjct: 3 LINLHTNTEYSFLSSTIKLDSLIKYAKENNLKTLVLTDHNNMFGVPKFYKLCKKNNIKPI 62
Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ---RLIELVSRMYLLDQGKQ 127
IG L+ +N +LL GY+ L S+ +
Sbjct: 63 IGLDLE---VENF--------------RFILLAKNYSGYKLLNELSSKKSK-------NK 98
Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
+ L ++ ++ +I++ +G F+ K L K +
Sbjct: 99 EIE-----LNDLDSDNIIIIDHPKNG-----FYAK-----NKEQLELKNYY--------- 134
Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
+ E + L L ED E +L + ++ +++
Sbjct: 135 ------------INSNDPKIENAVYVQERKL-LFAEDNEYLKILNKIGNNK---EENS-- 176
Query: 248 VTPDHYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
+ + F D+ E L+ T + + LP F
Sbjct: 177 -NFKFF-----DFEKWFEDIDEKILKRTNYLVENINIEFPKKEFNLPDFDNNL-----GL 225
Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
E + K + A+ + + ++R+++E +VI ++KFS YFLI+ DFI+W
Sbjct: 226 ESDLFLKKILKESV----INKKAELKYYPNVKERINYEYSVIKKLKFSNYFLIIWDFIKW 281
Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
A+KN I +GPGRGS +GS+ +Y L IT ++PL++ LLFERFLNPDR++MPD DID DR
Sbjct: 282 ARKNKISIGPGRGSASGSLVSYLLNITSVNPLKYDLLFERFLNPDRITMPDIDIDIQDDR 341
Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
RDEVI Y+ KYG+E A I TF +L AK+A+RDVGR L +P S V+ + KLIPN+
Sbjct: 342 RDEVIDYIFEKYGYEHCATISTFQTLGAKSAIRDVGRMLGIPESDVNAISKLIPNN---- 397
Query: 487 VSLQAIADDSRFREARLA---DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
SL+ D ++ L DP +L +I++KLEGL R + THAAGI+I ++P++ V
Sbjct: 398 QSLEEAYDKNKSFFRELISKGDPIYKKLYKIAKKLEGLPRQSGTHAAGIIISNKPITNYV 457
Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVDLSL 600
P + + V Q++M+++E GL+K D LGLK LT+++ + + + ++ +
Sbjct: 458 PTFESKDNYNQV-QYSMEFLEDFGLLKIDLLGLKNLTIIKNIEEKINKELLFDHLINFND 516
Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
+P D +T +LL+ T GIFQLES GM+ ++ + D EDI+A++SLYRPGPI I +
Sbjct: 517 LPIIDKKTNNLLSNGKTEGIFQLESPGMKSTIKKVGIDSFEDIVAIISLYRPGPIQYIPI 576
Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
Y K + I IHP D ++ T G+IIYQEQ+MQIAQ ++G+S ++AD+LRRA+ KK
Sbjct: 577 YAKNKKNPKNIEKIHPEYDEIVAPTYGIIIYQEQIMQIAQKVAGFSFAQADLLRRAISKK 636
Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
+ ++DK K++FI G KNG SK + I+ L+ KFADYGFNKSHA AYA ++Y+ A+ K
Sbjct: 637 DETKLDKIKDKFIEGGIKNGYSKKVLEKIYSLIEKFADYGFNKSHAVAYATLAYKMAYYK 696
Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
+YP+ F +A ++ + E IKK+ ++A+ I++ P +N + + +I+ L
Sbjct: 697 ANYPLVFYSALISNSNGSQENIKKYVKEAKNNGIKVYSPDINFSTENAVFDNGKIFLPLI 756
Query: 841 AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
IKG+G+ + I+ E + + + + DF R+ +++ ++E L+ A L FG
Sbjct: 757 MIKGLGSVAIKKIIDERNKNGKYKNFFDFILRLKFIGISKSIIEKLIKANTLRSFGNQD- 815
Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
LL +L+ + YA+ + + + + + + +E S +NE L
Sbjct: 816 TLLNNLELAKNYAETILSKVAKNLYDDYKNFGLDLEFILEEIERDLEEES---KNEIEYL 872
Query: 960 GFYFS 964
G F+
Sbjct: 873 GMSFN 877
>gnl|CDD|180191 PRK05672, dnaE2, error-prone DNA polymerase; Validated.
Length = 1046
Score = 572 bits (1477), Expect = e-163
Identities = 307/926 (33%), Positives = 462/926 (49%), Gaps = 80/926 (8%)
Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
P + L HS++S L+GA ++++ A A+AITD L + ++ A G+
Sbjct: 2 LPPYAELHCHSNFSFLDGASHPEELVERAARLGLRALAITDECGLAGVVRAAEAAKELGL 61
Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
+ +IG +L + G P P P +++L EGY RL L++R L GK
Sbjct: 62 RLVIGAELSL-----------GPDPDPGGPHLLVLARDREGYGRLSRLITRARLRA-GKG 109
Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT-FKKLFGDRLYVNL 186
R+ L L E +LTG G + A + A L F DR+++ L
Sbjct: 110 EYRLDLDDLAEPAGGHWAILTGCRKGFVILALPYGGDAAALAALAALLDAFFADRVWLEL 169
Query: 187 QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
H R D R +++ LA +PLVAT + D + A+ +++
Sbjct: 170 TLHGRPDDDRRNARLAALAARAGVPLVATGDVHMHHRSRRRLQDAMTAIRARRSLAEAGG 229
Query: 246 PRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
+ P + +L++ +EM +F D PEAL TVE+A RC+F L + A P
Sbjct: 230 -WLAPNGERHLRSGAEMARLFPDYPEALAETVELAERCAFDLDLLAYEYPDEPVPA---- 284
Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
+ LR AG R G K +++ EL +IA + + GYFL V D
Sbjct: 285 GHTPASWLRQLTEAGAARRYGPGIPPKAR------AQIEHELALIAELGYEGYFLTVHDI 338
Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
+++A+ I + GRGS A S YAL IT++DP++ LLFERFL+P+R PD D+DF
Sbjct: 339 VRFARSQGI-LCQGRGSAANSAVCYALGITEVDPVQSGLLFERFLSPERDEPPDIDVDFE 397
Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
DRR+EVI+YV +YG +R AQ+ + + ++A+RDV +AL + QVD K
Sbjct: 398 HDRREEVIQYVYRRYGRDRAAQVANVITYRPRSAVRDVAKALGLSPGQVDAWAK------ 451
Query: 484 AHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
+ D R R+A L P R++E++ +L G RH S H+ G VI DRPL++
Sbjct: 452 QVSRWSGSADDLQRLRQAGLDPESPIPRRVVELAAQLIGFPRHLSQHSGGFVICDRPLAR 511
Query: 542 LVP-----MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595
LVP M + RS V Q++ GL+K D L L L+ L ++ D +A+ RG +
Sbjct: 512 LVPVENAAM--EGRS---VIQWDKDDCAAVGLVKVDVLALGMLSALHRAFDLIAEHRGRR 566
Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
+ L+ IP DD Y +L ++G+FQ+ES L ++P D++ V++ RPGPI
Sbjct: 567 LTLASIPLDDPAVYDMLCRADSVGVFQVESRAQMAMLPRLRPRTFYDLVVEVAIVRPGPI 626
Query: 656 DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
+V Y R+NG+E + HP ++ +L+ T GV ++QEQVMQIA +G++ EAD L
Sbjct: 627 QGGMVHPYLRRRNGQEPVTYPHPELEKVLERTLGVPLFQEQVMQIAIDAAGFTPGEADQL 686
Query: 714 RRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
RRAM + K +++ +ER G G + A IFE + F +YGF +SHAA++A +
Sbjct: 687 RRAMAAWRRKGRLERLRERLYDGMLARGYTGEFADRIFEQIKGFGEYGFPESHAASFAKL 746
Query: 773 SYQTAWMKTHYPVEFLAA-----SM------TLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
Y ++W+K H+P F AA M L QDAR+ ++++P V
Sbjct: 747 VYASSWLKCHHPAAFCAALLNSQPMGFYSPQQL-----------VQDARRHGVEVLPVDV 795
Query: 822 NTPCVD-----FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
N D G + L ++G+G A I+ A A PF S+ED R
Sbjct: 796 NASGWDATLEPLPDGGPAVRLGLRLVRGLGEEAAERIVAARARGPFTSVEDLARRAG--- 852
Query: 877 LNRRVLESLVFAGALDCFGYSRMQLL 902
L+RR LE+L AGAL G R Q L
Sbjct: 853 LDRRQLEALADAGALRSLGGDRRQAL 878
>gnl|CDD|149024 pfam07733, DNA_pol3_alpha, Bacterial DNA polymerase III alpha
subunit.
Length = 381
Score = 567 bits (1465), Expect = e-162
Identities = 223/434 (51%), Positives = 288/434 (66%), Gaps = 57/434 (13%)
Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
LR GL+ R G R+RL+ ELNVI +M F+GYFLIV D ++WAK
Sbjct: 2 YLRKLCEEGLKERYLPG--------IPVRERLEKELNVIIKMGFAGYFLIVWDLVKWAKD 53
Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
N IPVGPGRGS AGS+ AY L IT++DPL+ LLFERFLNP+R SMPD DIDF +RR+E
Sbjct: 54 NGIPVGPGRGSAAGSLVAYLLGITEVDPLKHDLLFERFLNPERDSMPDIDIDFEDERREE 113
Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
VI YV+ KYG +RVAQI TFG+L AK+A+RDVGRA
Sbjct: 114 VIDYVKEKYGEDRVAQIATFGTLAAKSAIRDVGRA------------------------- 148
Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
L+E+++KLEGL RH HA G+VI D PL+ VP+ +
Sbjct: 149 --------------------ELIELAKKLEGLPRHTGQHAGGVVISDDPLTDFVPLQKP- 187
Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
D PVTQF+ +E GL+KFDFLGL+TLT+++ +LD + + RG+ +DL+ IP DD +T
Sbjct: 188 ADDRPVTQFDKDDLEDLGLLKFDFLGLRTLTIIRDALDLIKENRGIDIDLATIPLDDPKT 247
Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKN 666
Y LL++ TLG+FQ ES GMR L+ ++PD ED++AL +LYRPGP+ N+ Y RK+
Sbjct: 248 YKLLSSGDTLGVFQFESRGMRSMLKRLKPDTFEDLVALSALYRPGPMQGGNVDDYIKRKH 307
Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
GKEKI HP ++P+LKET GVI+YQEQVMQIAQ+L+G+SL EAD+LRRAMGKK EEM+
Sbjct: 308 GKEKIEYPHPDLEPILKETYGVIVYQEQVMQIAQILAGFSLGEADLLRRAMGKKKPEEME 367
Query: 727 KQKERFISGASKNG 740
K +E+FI GA +NG
Sbjct: 368 KLREKFIEGAKENG 381
>gnl|CDD|180917 PRK07279, dnaE, DNA polymerase III DnaE; Reviewed.
Length = 1034
Score = 550 bits (1418), Expect = e-157
Identities = 316/968 (32%), Positives = 494/968 (51%), Gaps = 115/968 (11%)
Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
F L + YS ++ + L +++ I I D +NL+ A F + A G+QPI
Sbjct: 2 FAQLDTKTVYSFMDSLIDLEKYVERAKELGYQTIGIMDKDNLYGAYHFIEGAQKNGLQPI 61
Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
+G +L+I +++ L+ +GY+ L+++ + GK+
Sbjct: 62 LGLELNIFVEEQEVTLR-------------LIAKNTQGYKNLLKIST---AKMSGKKQFS 105
Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
+L+ I +I+ P +F+ S+ E Y+
Sbjct: 106 DLSQYLEGIA---VIV-------P-----YFDWSETLE---------LPFDYYI------ 135
Query: 191 GYDRYRESQVVQLAYTHE-LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
G D+ + LPL + D E +L A+ + +S ++ P V+
Sbjct: 136 GVDQETP----GSDFKRPILPLRTVR---YFESADRETLQMLHAIRDN--LSLREVPLVS 186
Query: 250 PDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
D L + + ++F + P+AL+N ++ S+ LPRF + +
Sbjct: 187 SDQELISCQSLETLFQERFPQALDNLEKLVSGISYDFDTDLK-LPRF------NRDRPAV 239
Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
ELR A GL+ KG + Y++RLD EL+VI M F YFLIV D +++ +
Sbjct: 240 EELRELAELGLK--------EKGLWSSPYQERLDKELSVIHDMGFDDYFLIVWDLLRFGR 291
Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
+G GRGS AGS+ AYAL IT IDP++ +LLFERFLN +R SMPD DID R
Sbjct: 292 SQGYYMGMGRGSAAGSLVAYALDITGIDPVKHNLLFERFLNKERYSMPDIDIDLPDIYRS 351
Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAHPV 487
E +RYV+N+YG + AQI+TF + AK A+RDV + +P ++ L K I D V
Sbjct: 352 EFLRYVRNRYGSDHSAQIVTFSTFGAKQAIRDVFKRFGVPEYELSNLTKKISFRDSLASV 411
Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM-Y 546
+ I+ FR+ + + EI++++EG R S HAAG+V+ D L+ +P+ Y
Sbjct: 412 YEKNIS----FRQIINSKLEYQKAFEIAKRIEGNPRQTSIHAAGVVMSDDDLTNHIPLKY 467
Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
D D+ +TQ++ +E GL+K DFLGL+ LT +QK + +A+ G+ +D+ I +D
Sbjct: 468 GD---DMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGIHIDIEAIDLED 524
Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
ET L T GIFQ E G L+ ++P C EDI+A SL RPG D + R+
Sbjct: 525 KETLALFAAGDTKGIFQFEQPGAINLLKRIKPVCFEDIVATTSLNRPGASDYTDNFVKRR 584
Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
+G+EK+ I P+I P+L+ T G+++YQEQVMQIAQ+ +G+SL +AD+LRRAM KK EM
Sbjct: 585 HGQEKVDLIDPVIAPILEPTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKNASEM 644
Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
K +E F+ GA + G S+ A +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP
Sbjct: 645 QKMEEDFLQGALELGHSEEKARELFDRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPA 704
Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
F + L + + I DA +F ++ S+NT K+ + +IY L IKG+
Sbjct: 705 VFY--DIMLNYSSSDYI----TDALEFGFEVAKLSINTIPYHDKIENKKIYLGLKNIKGL 758
Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
A I+E ++PF S+EDF +R+ + LE L+ G D F +R +++ +L
Sbjct: 759 PRDLAYWIIE---NRPFSSIEDFLTRLPENYQKKEFLEPLIKIGLFDSFEKNRQKIINNL 815
Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDK----ITLEKFSVENSSVRFENEQRVLG 960
DN+ +F +E G+ F+D + E +S + ++ EQ +LG
Sbjct: 816 DNL----------------FVFVNELGSLFADSSYSWVEAEDYS---ETEKYSLEQELLG 856
Query: 961 FYFSGHPL 968
S HPL
Sbjct: 857 VGVSKHPL 864
>gnl|CDD|135648 PRK05898, dnaE, DNA polymerase III DnaE; Validated.
Length = 971
Score = 525 bits (1355), Expect = e-149
Identities = 290/904 (32%), Positives = 464/904 (51%), Gaps = 88/904 (9%)
Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
F++L HS YSLL LS+++I+ + QP + +TD NNL+ +EF KA A + PI
Sbjct: 2 FINLNTHSHYSLLSSTLSIDDIIKFALDNNQPYVCLTDLNNLYGCIEFYDKAKAHNLIPI 61
Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
IG L+I+ Q T ++VL GY LI++ S +++
Sbjct: 62 IG--LEIEYQ-------------STNATLVLYAKNYNGYLNLIKISS--FIMTN------ 98
Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
+ + + L ++ + F+ + + F +F Y N
Sbjct: 99 --KEFEIQDYLDDLFIVCKKGTFVFKSPNFYQTHNQNAPNAIAFNSVF----YANKNDKI 152
Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
+ ++A N L + +E D
Sbjct: 153 VF----------------NAMLAIKNDLKI-DELKNCQDFD------------------- 176
Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
+++ N +E S+FS + L+N ++ +++H LP I K
Sbjct: 177 NNHFLNDNEAQSLFSPI--QLDNLNKVLNELK--VEIHD--LPINIIKYDKQNSIISSEI 230
Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
L+ ++GL RL G + Y +RL +EL++I +F YFLIV DFI +AK N
Sbjct: 231 LKQLCISGLNKRLNAN---DGQVKKIYVKRLKYELDIINEKQFDDYFLIVYDFINFAKSN 287
Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
I +GPGRGS AGS+ AY L ITDIDP++++L+FERFLNP R SMPD D D +RRDEV
Sbjct: 288 GIIIGPGRGSAAGSLIAYLLHITDIDPIKYNLIFERFLNPTRKSMPDIDTDIMDERRDEV 347
Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
+ Y+ KYG++ VA IITF ++AK A+RDVGR L + +D++CK I D +
Sbjct: 348 VEYLFEKYGNDHVAHIITFQRIKAKMAIRDVGRILGIDLKVIDKICKNIKPDYEEDLD-L 406
Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
AI ++ +E + L ++++K+ R THAAG+V+ + L+ ++P+ +
Sbjct: 407 AIKKNTILKEMYV---LHKELFDLAKKIINAPRQIGTHAAGVVLSNSLLTNIIPIQLGI- 462
Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
+D P++Q++M+++E+ GLIK D LGLK LT++ L + + + K+DL I +D +
Sbjct: 463 NDRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKLIKENQNKKIDLFNINLNDKNVF 522
Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
L T GIFQLES GM++ L+ ++P IEDI + +L+RPGP NI + R+ +E
Sbjct: 523 EDLAKGRTNGIFQLESPGMKKVLKKVKPQNIEDISIVSALFRPGPQQNIKTFVERRFKRE 582
Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
+ + +L+ T G+I+YQEQV+ + + ++ + ++ AD RRA+ KK ++ + + K
Sbjct: 583 EFSYWNEATKKILEPTHGIIVYQEQVINLVKTIANFDIATADNFRRAISKKDEKILIQLK 642
Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
+ FI GA KN + + IFE + FADYGFN SH+ AY+ ISY A++K +YP+EFL+
Sbjct: 643 KDFIEGALKNNYKQPLVNQIFEYIFSFADYGFNHSHSLAYSYISYWMAYLKHYYPLEFLS 702
Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIYYSLAAIKGVGT 847
++ + +K+ + +A++FNI I P +N F + I + IKG G
Sbjct: 703 ILLSHTSASKDKLLSYLNEAKEFNISIKKPDINYSSNSFVLDTQKQIIRFGFNTIKGFGD 762
Query: 848 TTARHIMEASADKPFDSLEDFCSRVD---SKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
+ I A +K F DF S +D ++ +E L+ G D F SR+ LL +
Sbjct: 763 ELLKKIKSALQNKTF---SDFISYIDALKKNNVSLSNIEILINVGTFDSFKLSRLFLLNN 819
Query: 905 LDNI 908
L I
Sbjct: 820 LPEI 823
>gnl|CDD|180950 PRK07373, PRK07373, DNA polymerase III subunit alpha; Reviewed.
Length = 449
Score = 175 bits (445), Expect = 7e-44
Identities = 87/289 (30%), Positives = 148/289 (51%), Gaps = 21/289 (7%)
Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
FNKSH+ AYA ++YQTA++K +YPVE++AA +T N +K++K+ ++ ++ I++ PP
Sbjct: 38 FNKSHSTAYAYVTYQTAYLKANYPVEYMAALLTANSGNQDKVQKYRENCQKMGIEVEPPD 97
Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNR 879
+N DF +I + L+A++ +G I++A F SL DFC RVD + +NR
Sbjct: 98 INRSGKDFTPVGEKILFGLSAVRNLGEGAIESILKAREEGGEFKSLADFCDRVDLRVVNR 157
Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
R LE+L++ GA D +R QL+ L+ + +AQ K + + N+F G S+
Sbjct: 158 RALETLIYCGAFDKIEPNRQQLINDLELVIDWAQKRAKEKASGQGNLFDLLGGNTSNSSA 217
Query: 940 LEKF--------SVENSS----VRFENEQRVLGFYFSGHPLDVYK---PILRKMGIKGYE 984
V + S ++ E E +LGFY S HPL + +L + + E
Sbjct: 218 ANNAFEQAPSAPPVADFSLQEKLKLEKE--LLGFYVSEHPLKSIRRPARLLSPINLSELE 275
Query: 985 ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
E + M+ ++ T+KG + ++ + + + EA FP
Sbjct: 276 EQKEK---TKVSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQSEAVVFP 321
>gnl|CDD|162340 TIGR01405, polC_Gram_pos, DNA polymerase III, alpha chain,
Gram-positive type. The N-terminal region of about 200
amino acids is rich in low-complexity sequence, poorly
alignable, and not included n this model.
Length = 1213
Score = 127 bits (321), Expect = 1e-29
Identities = 207/948 (21%), Positives = 339/948 (35%), Gaps = 243/948 (25%)
Query: 78 DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
++ + L K P I++ G + L +LVS + L RI S L+
Sbjct: 365 ELNNKLSSEELYKRLRPN--HIIIYAKNQAGLKNLYKLVS-ISLTKYFYTRPRILRSLLK 421
Query: 138 EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNLQRHRGYDRY 195
+ EGL++ + S G + A E+ + F ++ Y +L R +
Sbjct: 422 KY-REGLLIGSACSEGELFDALLSKPDDELEEIAKRYDFIEIQPPGNYAHLIE-REQVKD 479
Query: 196 RES------QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRV 248
+E+ ++++LA P+VAT + ++ ED +L+A +++ P+
Sbjct: 480 KEALKEIIKKLIELAKELNKPVVATGDVHYIEPEDKIYRKILVASQGLGNPLNRHFNPKE 539
Query: 249 TPDHYLKNRSEMVSIFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDD 302
P+ + + +EM+ FS L E ENT +IA + I + + IE
Sbjct: 540 VPELHFRTTNEMLDEFSFLGEEKAYEIVVENTNKIADQIEEIQPIKDKLYTPKIEGA--- 596
Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY----RQRLDFELNVIARMKFSGYFL 358
+ ++R+ AK + QR++ EL I F+ +L
Sbjct: 597 -----DEKIRDLTYEN----------AKKIYGDPLPEIVEQRIEKELKSIIGNGFAVIYL 641
Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
I +Q + ++ VG RGS S+ A IT+++PL
Sbjct: 642 ISQLLVQKSLQDGYLVGS-RGSVGSSLVATMTGITEVNPLPPHYLCPNCKYSEFITDGSV 700
Query: 400 ---FSLL-------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
F L FE FL +PD D++F + + + YV+
Sbjct: 701 GSGFDLPDKDCPKCGAPLKKDGQDIPFETFLGFKGDKVPDIDLNFSGEYQAKAHNYVKEL 760
Query: 438 YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
+G + + T G++ K A V + + D +
Sbjct: 761 FGEDHTFRAGTIGTVAEKTAYGYVKKYFE---------------------------DQGK 793
Query: 498 FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-- 555
D ++RL Q G+ R H GI+I VP Y DV PV
Sbjct: 794 H----YRDAEIERL---VQGCTGVKRTTGQHPGGIII--------VPKYMDVYDFTPVQY 838
Query: 556 -----------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
T F+ I L+K D LG T+++ D +D IP D
Sbjct: 839 PADDTNSDWKTTHFDFHSIHD-NLLKLDILGHDDPTMIKMLQDLTG-----IDPKTIPMD 892
Query: 605 DHET--------------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
D E +L GTLGI + + +R LE +P D++ + L
Sbjct: 893 DKEVMSIFSSPKALGVTPEEILEKTGTLGIPEFGTKFVRGMLEETKPKTFADLVRISGLS 952
Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
V N LI +K VI ++ +M + + G A
Sbjct: 953 H----GTDVWLGN----------AQDLIKSGIKTLSDVIGCRDDIM-VYLIHKGLEPKLA 997
Query: 711 ----DVLRRAMGKKIKEEM------DKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
+ +R+ GK +K E +K E +I K I Y
Sbjct: 998 FKIMEKVRK--GKGLKAEYIELMKENKVPEWYIESCLK--IK----------------YM 1037
Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN---------VEKIKKFCQD--A 809
F K+HAAAY +++++ A+ K HYP+E+ AA ++ E IK+ ++
Sbjct: 1038 FPKAHAAAYVLMAWRIAYFKVHYPLEYYAAYFSIRAKAFDLETMIKGKEFIKQKLEEINT 1097
Query: 810 RQFNIQIMPPSVNTPCV----------DFKVGDNRIYYSLA---------------AIKG 844
R+ + P + V FK +Y S A AI G
Sbjct: 1098 RRKINKASPKEKDLLTVLEIVLEMMARGFKFQPIDLYKSQATEFLIEGNTLIPPFNAIPG 1157
Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
+G A I+EA +KPF S ED R K+++ +E L G LD
Sbjct: 1158 LGENVANSIVEARNEKPFLSKEDLKKRT---KISKTHIEKLDSMGVLD 1202
Score = 39.3 bits (92), Expect = 0.005
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
V L H+ S ++ S+ + + AIAITD + + E + A GI+ I
Sbjct: 105 VELHFHTKMSQMDAITSVQEYVKQAKKWGHKAIAITDHGVVQAFPEAYKAAKKDGIKIIY 164
Query: 72 G 72
G
Sbjct: 165 G 165
>gnl|CDD|128757 smart00481, POLIIIAc, DNA polymerase alpha chain like domain.
DNA polymerase alpha chain like domain, incl. family of
hypothetical proteins.
Length = 67
Score = 76.1 bits (188), Expect = 4e-14
Identities = 33/65 (50%), Positives = 42/65 (64%)
Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
L VHS YSLL+GALS ++ + AIAITD NLF A+EF + A AGI+PIIG
Sbjct: 1 DLHVHSDYSLLDGALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIG 60
Query: 73 CQLDI 77
+ +I
Sbjct: 61 LEANI 65
>gnl|CDD|179031 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 57.9 bits (141), Expect = 1e-08
Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 41/163 (25%)
Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN---------VEKIKKFCQD- 808
Y F K+HAAAY +++++ A+ K HYP+ + AA ++ D+ E IK ++
Sbjct: 1261 YMFPKAHAAAYVLMAWRIAYFKVHYPLAYYAAYFSVRADDFDLETMSKGKEAIKAKMKEI 1320
Query: 809 -------------------------ARQFNIQIMPPSVN-TPCVDFKVGDNRIYYSLAAI 842
R F Q + + +F + + + A+
Sbjct: 1321 KSKGNDASNKEKDLLTVLEIALEMLERGFKFQ--KVDLYKSDATEFIIEGDSLIPPFNAL 1378
Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
G+G A+ I+EA + F S ED R K+++ ++E L
Sbjct: 1379 PGLGENVAKSIVEAREEGEFLSKEDLRKR---TKVSKTLIEKL 1418
Score = 49.8 bits (120), Expect = 3e-06
Identities = 71/326 (21%), Positives = 120/326 (36%), Gaps = 59/326 (18%)
Query: 99 IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
+LV G + L +LVS + + RI S L + EGL++ + G + A
Sbjct: 613 ATILVKNQVGLKNLFKLVS-LSNTKYFYRVPRIPRSLLDKY-REGLLIGSACEEGEVFDA 670
Query: 159 FFFNSSQVAEKRLLTFKKLFGDRLYV---NLQRH---RGYDRYRE------SQVVQLAYT 206
+ E+ F D + + +H R + E +++L
Sbjct: 671 VLQKGDEELEEIAK-----FYDYIEIQPPANYQHLIERELVKDEEELKEIIKNLIELGKK 725
Query: 207 HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
P+VAT + +L ED +L+ S P+ + + EM+ F+
Sbjct: 726 LNKPVVATGDVHYLDPEDKIYRKILV---ASQGGGNPLNRHPLPELHFRTTDEMLDEFAF 782
Query: 267 LPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
L E L ENT +IA I + + IE E E+R
Sbjct: 783 LGEELAKEIVVENTNKIADLIEEIEPIKDKLYTPKIEG--------AEEEIREL------ 828
Query: 321 VRLAQGAIAKGYHAQDY--------RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
K + + Y +R++ ELN I F+ +LI ++ + ++
Sbjct: 829 ------TYKKAH--EIYGEPLPEIVEKRIEKELNSIIGNGFAVIYLISQKLVKKSLEDGY 880
Query: 373 PVGPGRGSGAGSVTAYALTITDIDPL 398
VG RGS S A + IT+++PL
Sbjct: 881 LVGS-RGSVGSSFVATMIGITEVNPL 905
Score = 40.6 bits (96), Expect = 0.002
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
V L +H+ S ++ S++ ++ + A AIAITD + + E A AGI+ I
Sbjct: 335 VELHLHTKMSTMDAIPSVSELVKRAAKWGHKAIAITDHGVVQAFPEAYNAAKKAGIKVIY 394
Query: 72 G 72
G
Sbjct: 395 G 395
>gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 31.7 bits (72), Expect = 1.1
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 895 GYSRMQLLQSLDNIQKYAQWV---EKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSV 950
G++ + + ++D++ +YA V E + KH A K FSDK L+K + E ++
Sbjct: 195 GHTVILVTHNMDDVAEYADDVLVLEHGKLIKH----ASPKEIFSDKEWLKKHYLDEPATS 250
Query: 951 RFENEQRVLGFYFSGHPLDV 970
RF ++ GF FS PL +
Sbjct: 251 RFASKLEKGGFKFSEMPLTI 270
>gnl|CDD|163364 TIGR03631, bact_S13, 30S ribosomal protein S13. This model
describes bacterial ribosomal protein S13, to the
exclusion of the homologous archaeal S13P and eukaryotic
ribosomal protein S18. This model identifies some (but
not all) instances of chloroplast and mitochondrial S13,
which is of bacterial type.
Length = 113
Score = 31.3 bits (72), Expect = 1.3
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 832 DNRIYYSLAAIKGVGTTTARHIMEA---SADKPFDSLED 867
+ R+ +L I G+G T AR I+E DK L +
Sbjct: 10 NKRVEIALTYIYGIGRTRARKILEKAGIDPDKRVKDLTE 48
>gnl|CDD|150490 pfam09826, Beta_propel, Beta propeller domain. Members of this
family comprise secreted bacterial proteins containing
C-terminal beta-propeller domain distantly related to
WD-40 repeats.
Length = 521
Score = 31.1 bits (71), Expect = 1.5
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 13/71 (18%)
Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
DP +P L+ I D + +AR+ + L+ + + I I + L
Sbjct: 108 DPKNPRLLREIEIDGSYVDARMIGDYL-YLV------------TNEYPNYIRIPQKDLEP 154
Query: 542 LVPMYRDVRSD 552
++P YRD D
Sbjct: 155 ILPSYRDTAGD 165
>gnl|CDD|177751 PLN00147, PLN00147, light-harvesting complex I chlorophyll-a/b
binding protein Lhca5; Provisional.
Length = 252
Score = 31.0 bits (70), Expect = 1.6
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 37/119 (31%)
Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDV-RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
R A AGI+ D + R +LPV W E AG +KF+F +TL +
Sbjct: 92 RFAMAGVAGILFTD--------LLRVTGIRNLPV------WYE-AGAVKFEFASTRTLFV 136
Query: 582 LQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS---GMRQALEGMQP 637
+Q L L+ F + + Y + G+ Q + G+ ALEG++P
Sbjct: 137 VQ--------------LLLMGFAETKRYMDFVSPGS----QAKEGSFFGLEAALEGLEP 177
>gnl|CDD|180337 PRK05985, PRK05985, cytosine deaminase; Provisional.
Length = 391
Score = 30.7 bits (70), Expect = 2.3
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 16/57 (28%)
Query: 584 KSLDF---LAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
LD LA+R GV +D+ L HE G LG FQLE R GMQ
Sbjct: 191 GQLDIVFGLAERHGVGIDIHL-----HEP-------GELGAFQLERIAARTRALGMQ 235
>gnl|CDD|132668 TIGR03629, arch_S13P, archaeal ribosomal protein S13P. This model
describes exclusively the archaeal ribosomal protein
S13P. It excludes the homologous eukaryotic 40S
ribosomal protein S18 and bacterial 30S ribosomal
protein S13.
Length = 144
Score = 30.3 bits (69), Expect = 2.4
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 15/65 (23%)
Query: 831 GDNRIYYSLAAIKGVGTTTARHIM---------------EASADKPFDSLEDFCSRVDSK 875
G+ + Y+L IKG+G AR I + +K +++E++ + S
Sbjct: 15 GNKPVEYALTGIKGIGRRFARAIARKLGVDPNAKLGYLDDEEIEKLEEAVENYEYGIPSW 74
Query: 876 KLNRR 880
LNRR
Sbjct: 75 LLNRR 79
>gnl|CDD|179731 PRK04053, rps13p, 30S ribosomal protein S13P; Reviewed.
Length = 149
Score = 30.2 bits (69), Expect = 2.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 831 GDNRIYYSLAAIKGVGTTTARHI 853
G + Y+L IKG+G TAR I
Sbjct: 19 GTKPVEYALTGIKGIGRRTARAI 41
>gnl|CDD|116618 pfam08008, Viral_cys_rich, Viral cysteine rich. Members of this
family are polydna viral proteins that contain a
cysteine rich motif. Some members of this family have
multiple copies of this domain.
Length = 86
Score = 29.6 bits (67), Expect = 4.5
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 894 FGYSRMQLLQSLDNIQKYAQWVEK-NRTNKHE 924
FG L S+ N+ Y + V++ N TN E
Sbjct: 41 FGSGICTPLDSIKNLTLYLELVKQLNDTNFEE 72
>gnl|CDD|179286 PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 454
Score = 29.4 bits (66), Expect = 4.7
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 16/100 (16%)
Query: 579 LTLLQKSLDFLAQRGVKV--DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE--- 633
+ L+ S+ + + G+ V D F D ++ L K G E+ A+
Sbjct: 231 IKLIPFSVTKILENGISVVDDKISDNFFDDISFKLPFNKNLQGKHNCENIAASYAVAKII 290
Query: 634 GMQPDCIEDIIALVSLYRP--------GPIDNIVVYNNRK 665
G++P + I+ +S ++ G I+NI YN+ K
Sbjct: 291 GVEP---KKILESISSFQSLPHRMQYIGSINNISFYNDSK 327
>gnl|CDD|177823 PLN02165, PLN02165, adenylate isopentenyltransferase.
Length = 334
Score = 29.4 bits (66), Expect = 5.3
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
YF +P + + YEE+V I+ N +LA +Q +K K GW
Sbjct: 236 YFKKYPPENKMGKWDQARKAAYEEAVREIKENTCQLA----KRQIEKIMKLKSAGW 287
>gnl|CDD|130894 TIGR01835, HMG-CoA-S_prok, 3-hydroxy-3-methylglutaryl CoA synthase,
prokaryotic clade. This clade of
hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found
in a limited spectrum of mostly gram-positive bacteria
which make isopentenyl pyrophosphate (IPP) via the
mevalonate pathway. This pathway is found primarily in
eukaryotes and archaea, but the bacterial homologs are
distinct, having aparrently diverged after being
laterally transferred from an early eukaryote. HMG-CoA
synthase is the first step in the pathway and joins
acetyl-CoA with acetoacetyl-CoA with the release of one
molecule of CoA. The Borellia sequence may have resulted
from a separate lateral transfer event.
Length = 379
Score = 29.3 bits (66), Expect = 5.9
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 719 KKIKEEMDKQKERFISGASKNGI--SKTIAVNIFELL 753
K I + DKQK + +++GI SK AV + LL
Sbjct: 58 KPILDRNDKQKIDMVIFGTESGIDQSKAAAVYVHGLL 94
>gnl|CDD|182192 PRK10005, PRK10005, dihydroxyacetone kinase subunit DhaL;
Provisional.
Length = 210
Score = 28.9 bits (65), Expect = 7.8
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 7/48 (14%)
Query: 137 QEIG----TEGLIMLT--GGSSGPIDRAFFFNSSQVAE-KRLLTFKKL 177
++IG G+ +L+ GG+SGP+ FF ++Q + ++ LT ++L
Sbjct: 59 KDIGFILKNTGMTLLSSVGGASGPLYGTFFIRAAQATQARQSLTLEEL 106
>gnl|CDD|183586 PRK12549, PRK12549, shikimate 5-dehydrogenase; Reviewed.
Length = 284
Score = 28.7 bits (65), Expect = 9.0
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 8/27 (29%)
Query: 381 GAGSVTAYA--------LTITDIDPLR 399
GAG+ A+A LTI D+DP R
Sbjct: 137 GAGAAVAHALLTLGVERLTIFDVDPAR 163
>gnl|CDD|162366 TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This
model describes a family similar to RecD, the
exodeoxyribonuclease V alpha chain of TIGR01447. Members
of this family, however, are not found in a context of
RecB and RecC and are longer by about 200 amino acids at
the amino end. Chlamydia muridarum has both a member of
this family and a RecD.
Length = 720
Score = 28.6 bits (64), Expect = 9.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
Y S +IKGVG A+ I++ + FD L+D
Sbjct: 83 YLSSRSIKGVGKKLAQRIVKTFGEAAFDVLDD 114
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.136 0.391
Gapped
Lambda K H
0.267 0.0836 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 17,053,643
Number of extensions: 1149154
Number of successful extensions: 2412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2298
Number of HSP's successfully gapped: 54
Length of query: 1033
Length of database: 5,994,473
Length adjustment: 103
Effective length of query: 930
Effective length of database: 3,768,849
Effective search space: 3505029570
Effective search space used: 3505029570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.5 bits)