Query 537021.9.peg.754_1 Match_columns 184 No_of_seqs 84 out of 86 Neff 3.6 Searched_HMMs 23785 Date Wed May 25 05:39:20 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_754.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2hpi_A DNA polymerase III alph 98.8 1E-08 4.2E-13 73.8 6.1 137 10-171 1052-1192(1220) 2 1lk5_A D-ribose-5-phosphate is 77.6 3.9 0.00016 20.6 5.2 126 48-177 53-206 (229) 3 3hhe_A Ribose-5-phosphate isom 63.6 3.5 0.00015 20.9 2.4 36 142-177 193-228 (255) 4 1m0s_A Ribose-5-phosphate isom 61.5 9 0.00038 18.4 4.5 106 66-177 71-196 (219) 5 1xtz_A Ribose-5-phosphate isom 51.6 13 0.00055 17.3 6.1 110 66-177 97-234 (264) 6 1uj6_A Ribose 5-phosphate isom 50.4 14 0.00058 17.2 4.7 101 70-177 80-204 (227) 7 3kwm_A Ribose-5-phosphate isom 48.7 11 0.00044 17.9 2.8 168 4-177 1-201 (224) 8 2ko1_A CTR148A, GTP pyrophosph 43.9 17 0.00073 16.6 5.2 71 106-182 7-80 (88) 9 3cq1_A Putative uncharacterize 43.5 13 0.00054 17.4 2.6 44 134-178 29-78 (103) 10 2pjm_A Ribose-5-phosphate isom 41.9 19 0.00078 16.4 5.2 103 70-177 77-204 (226) 11 1uwd_A Hypothetical protein TM 37.5 12 0.00052 17.5 1.7 45 134-178 29-79 (103) 12 1o8b_A Ribose 5-phosphate isom 36.5 23 0.00095 15.9 3.0 108 65-177 70-195 (219) 13 2f8m_A Ribose 5-phosphate isom 34.9 24 0.001 15.7 5.3 36 142-177 181-217 (244) 14 1bxy_A Protein (ribosomal prot 33.0 12 0.00052 17.5 1.2 23 158-180 37-59 (60) 15 2zjr_W 50S ribosomal protein L 30.6 19 0.00081 16.3 1.8 22 158-179 34-55 (55) 16 1wvq_A Hypothetical protein PA 27.5 29 0.0012 15.2 2.3 48 66-118 43-98 (167) 17 1y7p_A Hypothetical protein AF 27.0 33 0.0014 14.9 5.4 70 102-179 2-78 (223) 18 2ekm_A Hypothetical protein ST 26.2 32 0.0013 14.9 2.3 33 66-103 40-74 (162) 19 1l1o_C Replication protein A 7 25.5 35 0.0015 14.7 3.6 59 37-97 81-163 (181) 20 2d16_A Hypothetical protein PH 25.2 32 0.0014 14.9 2.2 32 66-103 40-73 (162) 21 2jsx_A Protein NAPD; TAT, proo 22.6 39 0.0017 14.4 5.6 70 105-183 8-78 (95) No 1 >2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* Probab=98.77 E-value=1e-08 Score=73.79 Aligned_cols=137 Identities=16% Similarity=0.085 Sum_probs=110.1 Q ss_pred CCCHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEE Q ss_conf 87110028667614898501344333235553102787522105899999878752499828999841001677764269 Q 537021.9.peg.7 10 NNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIR 89 (184) Q Consensus 10 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~LLe~gkpvii~VsAe~rle~eg~~LR 89 (184) .++|.+++..|+. ++| +...|+||+++++-|..+++.-+ .+|..|.+++|...-+ + .++++++ T Consensus 1052 ~~v~~~~TKkG~~-maf------------~tleD~tG~iev~vF~~~y~~~~-~~L~~~~~l~v~G~v~-~--~~~~~i~ 1114 (1220) T 2hpi_A 1052 EEVVRKPTRSGGM-MAR------------FTLSDETGALEVVVFGRAYEGVS-PKLKEDIPLLVLAEVE-K--GEELRVL 1114 (1220) T ss_dssp CCC-------------C------------EEEEETTEEEEEC--------------CTTCEEEEEEEEC--------CEE T ss_pred EEEEECCCCCCCE-EEE------------EEEEECCCCEEEEECHHHHHHHH-HHHCCCCEEEEEEEEE-E--CCCEEEE T ss_conf 7889732799996-999------------99998999889998379999998-8753598799999999-8--9944899 Q ss_pred EEECCCHHHHHHHHCCCEEEEEE----CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHH Q ss_conf 86504158999732011099973----80157899999611221037888713999974898547999668970789899 Q 537021.9.peg.7 90 LLWVESLEKKSMEMLDSLRVYLQ----DRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIA 165 (184) Q Consensus 90 i~~vepLD~aAa~~~kgLRIfVr----D~~pL~sI~s~Le~~~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp~f~VSPqIa 165 (184) +..|.+|+++... .+.+.|.+. ++..+..+++.|+. ..|.-+|.|.+..++ .++-+.|+..++++++. T Consensus 1115 ~~~i~~L~~~~~~-~~~l~i~l~~~~~~~~~l~~l~~il~~-----~~G~~~V~l~~~~~~--~~~~~~l~~~~v~~el~ 1186 (1220) T 2hpi_A 1115 AQAVWTLEEVLEA-PKALEVEVDHALLDEKGVARLKSLLDE-----HPGSLPVYLRVLGPF--GEALFALREVRVGEEAL 1186 (1220) T ss_dssp EEEEEEHHHHTTS-CEEEEEEECSCCCTTTC-CHHHHHHHT-----SEEEEEEEEEEECSS--SEEEEEEEEEEECSTHH T ss_pred EEECCCHHHHHCC-CCEEEEEECHHHCCHHHHHHHHHHHHH-----CCCCCEEEEEEECCC--CEEEEEECCCCCCHHHH T ss_conf 8351559999611-762899943474799999999999973-----969975999998699--45999827812799999 Q ss_pred HHHHHC Q ss_conf 987406 Q 537021.9.peg.7 166 FDLEHI 171 (184) Q Consensus 166 gALKsI 171 (184) ..|++- T Consensus 1187 ~~L~~~ 1192 (1220) T 2hpi_A 1187 GLLEAE 1192 (1220) T ss_dssp HHHTTT T ss_pred HHHHHC T ss_conf 998748 No 2 >1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A* Probab=77.65 E-value=3.9 Score=20.60 Aligned_cols=126 Identities=14% Similarity=0.163 Sum_probs=72.6 Q ss_pred EEEEEHHHHHHHHHHHH----HCCCCEEEEEEECCCCCCCCCCCEEEE-ECCCHHHHHHHHCCCEEEEEECC-------- Q ss_conf 52210589999987875----249982899984100167776426986-50415899973201109997380-------- Q 537021.9.peg.7 48 FLSLQEQQQLEEEKPRL----LREKKPYIIVVSQEDKLSLQRDSIRLL-WVESLEKKSMEMLDSLRVYLQDR-------- 114 (184) Q Consensus 48 ~~~~~~~~~le~~~~~L----Le~gkpvii~VsAe~rle~eg~~LRi~-~vepLD~aAa~~~kgLRIfVrD~-------- 114 (184) .+++-.+....+.+..+ +++..++-+++..-+-.+++..-+.-- .+--.|+..|.+.+-+-+-++.. T Consensus 53 ~V~tS~~t~~~a~~~gi~~~~~~~~~~iDv~iDGaDevd~~l~liKGGGGal~rEKivA~~a~~~i~I~D~~K~v~~Lg~ 132 (229) T 1lk5_A 53 GVPTSYQAKLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKLVDYLCQ 132 (229) T ss_dssp EEESSHHHHHHHHHTTCCBCCGGGCSCEEEEEECCSEECTTCCEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSTTS T ss_pred EEECCHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC T ss_conf 87456999999997799454412256411784162443400576762006788899999853036999742210000578 Q ss_pred ----------CHHHHHHHHHHHH-----HHCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH Q ss_conf ----------1578999996112-----21037888713999974898547999668970789899987406462111 Q 537021.9.peg.7 115 ----------SPLREIHKYFENR-----QTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184) Q Consensus 115 ----------~pL~sI~s~Le~~-----~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184) .+...+...|+.. -+.+.+++|+ ++.++|..-+++..+.+.--.++...|+++|||++. T Consensus 133 ~~plpvEV~p~~~~~v~~~l~~~g~~~~lr~~~~~~~p----~vTD~GN~IlD~~~~~i~dp~~l~~~L~~ipGVVe~ 206 (229) T 1lk5_A 133 KMPVPIEVIPQAWKAIIEELSIFNAKAELRMGVNKDGP----VITDNGNFIIDAKFPRIDDPLDMEIELNTIPGVIEN 206 (229) T ss_dssp SCCEEEEECGGGHHHHHHHGGGGTCEEEECBCSSSSSB----CCCTTSCEEEEEECSCCSCHHHHHHHHHTSTTEEEE T ss_pred CCCCCEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCC----EECCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEE T ss_conf 78806587636799999999972899559777538996----373699869967889979999999998789869964 No 3 >3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, structural genomics; HET: 5RP; 2.30A {Bartonella henselae str} Probab=63.56 E-value=3.5 Score=20.91 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=28.0 Q ss_pred EECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH Q ss_conf 974898547999668970789899987406462111 Q 537021.9.peg.7 142 FLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184) Q Consensus 142 li~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184) ++.++|..-+++..+...=-.++..+|+++|||++. T Consensus 193 ~vTDnGN~IlD~~~~~i~dp~~l~~~L~~ipGVVe~ 228 (255) T 3hhe_A 193 FKTDGGHFIFDAFWGRILQPKLLSEALLAIPGVVEH 228 (255) T ss_dssp CCCTTSCEEEEECCSCCSCHHHHHHHHHTSTTEEEE T ss_pred EECCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEE T ss_conf 270699789976489879999999998579999703 No 4 >1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1 Probab=61.52 E-value=9 Score=18.35 Aligned_cols=106 Identities=12% Similarity=0.126 Sum_probs=58.1 Q ss_pred CCCCEEEEEEECCCCCCCCCCCEEEEECC-CHHHHHHHHCCCEEEEEEC-------------------CCHHHHHHHHHH Q ss_conf 49982899984100167776426986504-1589997320110999738-------------------015789999961 Q 537021.9.peg.7 66 REKKPYIIVVSQEDKLSLQRDSIRLLWVE-SLEKKSMEMLDSLRVYLQD-------------------RSPLREIHKYFE 125 (184) Q Consensus 66 e~gkpvii~VsAe~rle~eg~~LRi~~ve-pLD~aAa~~~kgLRIfVrD-------------------~~pL~sI~s~Le 125 (184) +.-..+-+++..-+-++++..-+---..- .-|+..|.+.+- .||+-| +-+...+...|+ T Consensus 71 ~~~~~iDiaiDGaDevd~~l~lIKGgGgallrEKiva~~a~~-~i~I~DesKlv~~Lg~~~plPvEV~p~~~~~v~~~l~ 149 (219) T 1m0s_A 71 NDVSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKK-FICIVDSSKQVDVLGSTFPLPVEVIPMARSQVGRKLA 149 (219) T ss_dssp GGCSCEEEEEECCSEECTTSCEECCTTSCHHHHHHHHHHEEE-EEEEEEGGGBCSSTTSSSCEEEEECGGGHHHHHHHHH T ss_pred CCCCCCCEECCCHHHCCCCCCCHHCCCHHHHHHHHHHHHHHC-EEEEECCCHHHHHCCCCCCEEEEECHHHHHHHHHHHH T ss_conf 435654532364553084758621583888898999985002-7999524401665399887689972678999999999 Q ss_pred HHHHCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH Q ss_conf 1221037888713999974898547999668970789899987406462111 Q 537021.9.peg.7 126 NRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184) Q Consensus 126 ~~~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184) .... ....+++ ++.++|..-+++..+.+.=--++...|+++|||++. T Consensus 150 ~lg~-~~~~r~~----~vTDnGN~IlD~~~~~i~dp~~l~~~L~~ipGVVe~ 196 (219) T 1m0s_A 150 ALGG-SPEYREG----VVTDNGNVILDVHNFSILNPVEIEKELNNVAGVVTN 196 (219) T ss_dssp HTTC-EEEECTT----CCCTTSCEEEEEESCCCSCHHHHHHHHHTSTTEEEE T ss_pred HCCC-CCCCCCC----CCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCEEEE T ss_conf 8189-9523787----473899979980389879999999997189989613 No 5 >1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae} Probab=51.58 E-value=13 Score=17.33 Aligned_cols=110 Identities=10% Similarity=0.100 Sum_probs=62.7 Q ss_pred CCCCEEEEEEECCCCCCCCCCCEEEEEC-CCHHHHHHHHCCCEEEEEEC-CC---------------------HHHHHHH Q ss_conf 4998289998410016777642698650-41589997320110999738-01---------------------5789999 Q 537021.9.peg.7 66 REKKPYIIVVSQEDKLSLQRDSIRLLWV-ESLEKKSMEMLDSLRVYLQD-RS---------------------PLREIHK 122 (184) Q Consensus 66 e~gkpvii~VsAe~rle~eg~~LRi~~v-epLD~aAa~~~kgLRIfVrD-~~---------------------pL~sI~s 122 (184) +.-..+-|++..-+-++++..-+---.. ---|+..|.+.+-+ ||+-| .+ +...+.+ T Consensus 97 ~~~~~iDi~iDGADEVd~~l~lIKGGGGAllrEKivA~~ak~~-IiIvDesK~v~~~LG~~~~~plPVEV~p~~~~~v~~ 175 (264) T 1xtz_A 97 EQYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVSTSAKTF-IVVADSRKKSPKHLGKNWRQGVPIEIVPSSYVRVKN 175 (264) T ss_dssp TTCCSEEEEEECCSEECTTSCEECCTTSCHHHHHHHHTTEEEE-EEEEEGGGBCSSSBTSSCCSCEEEEECGGGHHHHHH T ss_pred HHCCCCCEEEECHHHHCCCCCEEEECCHHHHHHHHHHHHCCCE-EEEEECCEEEHHHCCCCCCCCCCEEECHHHHHHHHH T ss_conf 3268520687061221557537876618877899999840667-999707606444427777888664654457999999 Q ss_pred HHHHH-----HHCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH Q ss_conf 96112-----21037888713999974898547999668970789899987406462111 Q 537021.9.peg.7 123 YFENR-----QTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184) Q Consensus 123 ~Le~~-----~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184) .|... -+.+..+.++-.- ++.++|..-+++..+...--.++...|+++|||++. T Consensus 176 ~l~~~~~~~~~~lR~~~~~k~gp-~vTDnGN~IlD~~~~~i~dp~~l~~~L~~ipGVVe~ 234 (264) T 1xtz_A 176 DLLEQLHAEKVDIRQGGSAKAGP-VVTDNNNFIIDADFGEISDPRKLHREIKLLVGVVET 234 (264) T ss_dssp HHHHTSCCSEEEECEETTTEEEE-CCCTTSCEEEEEECSSBSCHHHHHHHHHTSTTEEEE T ss_pred HHHHHHCCCCCEEECCCCCCCCC-CCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEE T ss_conf 99997279871461277655784-172599769982689968999999997079989833 No 6 >1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A* Probab=50.44 E-value=14 Score=17.22 Aligned_cols=101 Identities=12% Similarity=0.069 Sum_probs=53.2 Q ss_pred EEEEEEECCCCCCCCCCCEEEE-ECCCHHHHHHHHCCCEEEEEECC-----------------CHHHHHHHHHHHHHHCC Q ss_conf 2899984100167776426986-50415899973201109997380-----------------15789999961122103 Q 537021.9.peg.7 70 PYIIVVSQEDKLSLQRDSIRLL-WVESLEKKSMEMLDSLRVYLQDR-----------------SPLREIHKYFENRQTQN 131 (184) Q Consensus 70 pvii~VsAe~rle~eg~~LRi~-~vepLD~aAa~~~kgLRIfVrD~-----------------~pL~sI~s~Le~~~~~~ 131 (184) .+-+++..-+-++++..-+--- .+---|+..|.+.+-.=+-++.. .+...+...|+.. T Consensus 80 ~iDv~iDGADevd~~l~liKGgGGal~rEKivA~~a~~~i~I~DesK~v~~Lg~~plPvEV~p~~~~~v~~~l~~l---- 155 (227) T 1uj6_A 80 GVDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHTKKVPVLGRGPVPVEIVPFGYRATLKAIADL---- 155 (227) T ss_dssp CEEEEEECCSEEEGGGEEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSSCSSCEEEEECSTTHHHHHHHHHTT---- T ss_pred CEEEEECCCHHHCCCCCEEECCCHHHHHHHHHHHHHHCEEEEECHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHC---- T ss_conf 0145641532217550024236188899999998501179996222402322899845486020699999999973---- Q ss_pred CCCCCCEEEE------EECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH Q ss_conf 7888713999------974898547999668970789899987406462111 Q 537021.9.peg.7 132 YDKQGKIGLI------FLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184) Q Consensus 132 ~~G~G~V~Lv------li~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184) ++ .+.+. ++.++|..-+++..+...---++...|+++|||++. T Consensus 156 -g~--~~~lR~~~~~p~vTDnGN~IlD~~~~~i~dp~~l~~~L~~ipGVVe~ 204 (227) T 1uj6_A 156 -GG--EPELRMDGDEFYFTDGGHLIADCRFGPIGDPLGLHRALLEIPGVVET 204 (227) T ss_dssp -TC--CEEECEETTEECCCTTSCEEEEECCCSCSCHHHHHHHHHTSTTEEEE T ss_pred -CC--CEEECCCCCCCEEECCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEE T ss_conf -99--72882279954583799889995279979999999998579989812 No 7 >3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structural genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp} Probab=48.68 E-value=11 Score=17.93 Aligned_cols=168 Identities=13% Similarity=0.119 Sum_probs=88.5 Q ss_pred EEEECCCCCHHCCCCCCCEEEEEEEH----------HHHHHHHHHHHHHCCCCC-EEEEEHHHHHHHHHH--HHH--CCC Q ss_conf 99506887110028667614898501----------344333235553102787-522105899999878--752--499 Q 537021.9.peg.7 4 IFFPKNNNRKGKKKPDGNHDFLFLED----------CYDHAIEMKLQEAEEDPN-FLSLQEQQQLEEEKP--RLL--REK 68 (184) Q Consensus 4 ~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~le~~~~--~LL--e~g 68 (184) +||-+.||+.+.|+.-+++-.-+.+| |-..+|+. |........ ..++-++......+. .+. +.. T Consensus 1 ~~~~~~~~~~~~K~~aa~~A~~~v~~gmvIGLGtGSTv~~~i~~-L~~~~~~~~~vv~tS~~t~~~~~~~Gi~l~~l~~~ 79 (224) T 3kwm_A 1 MFFNKKNNQDELKKLAATEAAKSITTEITLGVGTGSTVGFLIEE-LVNYRDKIKTVVSSSEDSTRKLKALGFDVVDLNYA 79 (224) T ss_dssp ------CCHHHHHHHHHHHHHTTCCSSEEEEECCSHHHHHHHHH-GGGCTTTEEEEEESCHHHHHHHHHTTCCBCCHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHH-HHHCCCCCCEEECCCHHHHHHHHHCCCCCCCCCCC T ss_conf 97545589999999999999985589999995866999999999-99606678768618699999998628975361338 Q ss_pred CEEEEEEECCCCCCCCCCCEEE-EECCCHHHHHHHHCCCEEEEEECCC-----------------HHHHHHHHHHHHHHC Q ss_conf 8289998410016777642698-6504158999732011099973801-----------------578999996112210 Q 537021.9.peg.7 69 KPYIIVVSQEDKLSLQRDSIRL-LWVESLEKKSMEMLDSLRVYLQDRS-----------------PLREIHKYFENRQTQ 130 (184) Q Consensus 69 kpvii~VsAe~rle~eg~~LRi-~~vepLD~aAa~~~kgLRIfVrD~~-----------------pL~sI~s~Le~~~~~ 130 (184) ..+-+++..-+-++++..-+-- -.+..-|+..|...+-+-|-+++.+ +...+...|+... . T Consensus 80 ~~iDl~iDGADeVd~~l~lIKGGGgallrEKiva~~a~~~iii~DesK~v~~Lg~~plPVEV~p~a~~~v~~~l~~lg-~ 158 (224) T 3kwm_A 80 GEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKKVNTLGNFPLPIEVIPMARSYIARQIVKLG-G 158 (224) T ss_dssp CSEEEEEECCSEECTTSCEECCSSSCHHHHHHHHHTEEEEEEEEEGGGBCSSBCSSCEEEEECGGGHHHHHHHHHHTT-C T ss_pred CEEEEEEECCHHHCCCCCEEECCCHHHHHHHHHHHHHHCEEEEECCCCEECCCCCCCEEEEECHHHHHHHHHHHHHCC-C T ss_conf 866999977032287755883161789998999996213799966231302349986889972778999999999817-9 Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH Q ss_conf 37888713999974898547999668970789899987406462111 Q 537021.9.peg.7 131 NYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184) Q Consensus 131 ~~~G~G~V~Lvli~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184) ...-+++ ++.++|..-+++..+...---++...|+++|||++. T Consensus 159 ~~~~r~p----~vTDnGN~IlD~~~~~i~dp~~l~~~L~~ipGVVe~ 201 (224) T 3kwm_A 159 QPVYREQ----TITDNGNVILDVYNLKIDNPLKLETELNQITGVVTN 201 (224) T ss_dssp EEEECTT----CCCTTSCEEEEEESCCBSCHHHHHHHHHTSTTEEEE T ss_pred CCEECCC----EECCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEE T ss_conf 8343345----063899879982689879999999998679999614 No 8 >2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Probab=43.88 E-value=17 Score=16.59 Aligned_cols=71 Identities=8% Similarity=0.123 Sum_probs=44.5 Q ss_pred CEEEEEE-CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECC--CCCCCHHHHHHHHHCCCHHEHHHHHC Q ss_conf 1099973-80157899999611221037888713999974898547999668--97078989998740646211103030 Q 537021.9.peg.7 106 SLRVYLQ-DRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD--HYPISPEIAFDLEHITGITKVVQVIH 182 (184) Q Consensus 106 gLRIfVr-D~~pL~sI~s~Le~~~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp--~f~VSPqIagALKsIpGVl~VeEi~~ 182 (184) .|+|... -+..|..|.+.+... |-.-..+-....++...+.+.+. ...--.++..+||.++||.+|.-+.. T Consensus 7 ~L~I~~~Dr~GlL~dIt~~is~~------~inI~~i~~~~~~~~~~~~i~v~V~d~~~L~~li~~L~~i~~V~~V~Rv~~ 80 (88) T 2ko1_A 7 GIRIVGEDKNGMTNQITGVISKF------DTNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSN 80 (88) T ss_dssp EEEEEEECCTTHHHHHHHHHTTS------SSCEEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEECS T ss_pred EEEEEEECCCCHHHHHHHHHHHC------CCEEEEEEEEECCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEEEC T ss_conf 99999977888799999999877------973999999704997999999999877889999999977999879999731 No 9 >3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A* Probab=43.53 E-value=13 Score=17.38 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=29.8 Q ss_pred CCCCEEEEEECCCCCEEEEEECC--CCC----CCHHHHHHHHHCCCHHEHH Q ss_conf 88713999974898547999668--970----7898999874064621110 Q 537021.9.peg.7 134 KQGKIGLIFLRSQGKIEIEITLD--HYP----ISPEIAFDLEHITGITKVV 178 (184) Q Consensus 134 G~G~V~Lvli~~~~~~EVEI~Lp--~f~----VSPqIagALKsIpGVl~Ve 178 (184) -=|-|.=+-+ +++.-.|.+.|+ .++ +.-+++.|+++++||-+|+ T Consensus 29 ~LGlV~~v~i-~~~~V~v~l~lt~~~cp~~~~i~~~i~~al~~~~gv~~V~ 78 (103) T 3cq1_A 29 NLGLIYDLVV-EPPRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVE 78 (103) T ss_dssp TTTCEEEEEE-ETTEEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEE T ss_pred CCCCEEEEEE-ECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE T ss_conf 0687789999-7891699998378999678999999999998089974389 No 10 >2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A* Probab=41.93 E-value=19 Score=16.40 Aligned_cols=103 Identities=14% Similarity=0.145 Sum_probs=52.9 Q ss_pred EEEEEEECCCCCCCCCCCEEE--EECCCHHHHHHHHCCCEEEEEEC------------------CCHHHHHHHHHHHH-- Q ss_conf 289998410016777642698--65041589997320110999738------------------01578999996112-- Q 537021.9.peg.7 70 PYIIVVSQEDKLSLQRDSIRL--LWVESLEKKSMEMLDSLRVYLQD------------------RSPLREIHKYFENR-- 127 (184) Q Consensus 70 pvii~VsAe~rle~eg~~LRi--~~vepLD~aAa~~~kgLRIfVrD------------------~~pL~sI~s~Le~~-- 127 (184) ++-+++..-+-++..+.++-- -.+.--|+..|.+.+-+=+-++. +.+.+.+...|+.. T Consensus 77 ~iDl~iDGADevd~~~l~lIKGgGgal~rEKiva~~a~~~i~I~D~sK~v~~Lg~~~plPvEV~p~a~~~v~~~l~~~g~ 156 (226) T 2pjm_A 77 DVDIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVVLVDESKLVKKLGEKFPIPVEVIPSAYRVVIRALSEMGG 156 (226) T ss_dssp CCSEEEECCSEEETTTCCEECCTTSCHHHHHHHHHHSSEEEEEEEGGGEESSTTSSSCEEEEECGGGHHHHHHHHHHTTC T ss_pred CCEEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEECCCCCHHHCCCCCCEEEEEECHHHHHHHHHHHHCCC T ss_conf 32289866411065663599747346898999997433499998621002225887973489806189999999998199 Q ss_pred ---HHCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH Q ss_conf ---21037888713999974898547999668970789899987406462111 Q 537021.9.peg.7 128 ---QTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184) Q Consensus 128 ---~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184) -+...++.|+ ++.++|..-+++.++ +.=..++...|+++|||++. T Consensus 157 ~~~~R~~~~~~gp----~iTDnGN~IlD~~~~-i~dp~~l~~~L~~ipGVVe~ 204 (226) T 2pjm_A 157 EAVIRLGDRKRGP----VITDNGNMIIDVFMN-IDDAIELEKEINNIPGVVEN 204 (226) T ss_dssp EEEECBCSSSSSB----CBCTTSCEEEEEECC-CSCHHHHHHHHHTSTTEEEE T ss_pred CEEEEEECCCCCC----EEEECCCEEEEECCC-CCCHHHHHHHHHCCCCEEEE T ss_conf 7379853268997----382099779982789-99999999998779989847 No 11 >1uwd_A Hypothetical protein TM0487; structural genomics, unknown function, contains PAAD domain, similar to PAAD protein, unknown activity; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A Probab=37.54 E-value=12 Score=17.48 Aligned_cols=45 Identities=18% Similarity=0.354 Sum_probs=28.1 Q ss_pred CCCCEEEEEECCCCCEEEEEECC--CCCCC----HHHHHHHHHCCCHHEHH Q ss_conf 88713999974898547999668--97078----98999874064621110 Q 537021.9.peg.7 134 KQGKIGLIFLRSQGKIEIEITLD--HYPIS----PEIAFDLEHITGITKVV 178 (184) Q Consensus 134 G~G~V~Lvli~~~~~~EVEI~Lp--~f~VS----PqIagALKsIpGVl~Ve 178 (184) -=|-|+=+-+.+++.-.|.+.|. .++.. -+++.++++++||-+|+ T Consensus 29 dLGlV~~i~i~~~g~v~v~~~lt~~~CP~~~~i~~~i~~al~~~~gv~~V~ 79 (103) T 1uwd_A 29 SLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVE 79 (103) T ss_dssp TTTCCCCEEECTTCEEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEE T ss_pred CCCCEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEE T ss_conf 368343578626980899998689998657999999999998089974289 No 12 >1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein structure initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A* Probab=36.50 E-value=23 Score=15.88 Aligned_cols=108 Identities=11% Similarity=0.079 Sum_probs=60.9 Q ss_pred HCCCCEEEEEEECCCCCCCCCCCEEEEECC-CHHHHHHHHCCCEEEEEEC-----------------CCHHHHHHHHHHH Q ss_conf 249982899984100167776426986504-1589997320110999738-----------------0157899999611 Q 537021.9.peg.7 65 LREKKPYIIVVSQEDKLSLQRDSIRLLWVE-SLEKKSMEMLDSLRVYLQD-----------------RSPLREIHKYFEN 126 (184) Q Consensus 65 Le~gkpvii~VsAe~rle~eg~~LRi~~ve-pLD~aAa~~~kgLRIfVrD-----------------~~pL~sI~s~Le~ 126 (184) ++....+-+++.--+-++++..-+.--.-- --|+..|.+.+-+=+-+++ +.+...+...|+. T Consensus 70 ~~~~~~iDiaiDGaDevd~~l~liKGgGgal~rEKiva~~a~~~iiI~D~sK~v~~Lg~~plPVEV~p~~~~~v~~~l~~ 149 (219) T 1o8b_A 70 LNEVDSLGIYVDGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADASKQVDILGKFPLPVEVIPMARSAVARQLVK 149 (219) T ss_dssp GGGCSCEEEEEECCSEECTTSCEECCCCC-HHHHHHHHHHEEEEEEEEEGGGBCSSBTSSCEEEEECGGGHHHHHHHHHH T ss_pred HHHCCCCCEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCEEEEECHHHHHHHHHHHHH T ss_conf 65678767675173021022435642689999888999835256999742134302699856689637789999999998 Q ss_pred HHHCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH Q ss_conf 221037888713999974898547999668970789899987406462111 Q 537021.9.peg.7 127 RQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184) Q Consensus 127 ~~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184) .. ....-+++ ++.++|..-+++..+...=-.++...|+++|||++. T Consensus 150 lg-~~~~~r~p----~vTdnGN~IlD~~~~~i~dp~~l~~~L~~ipGVVe~ 195 (219) T 1o8b_A 150 LG-GRPEYRQG----VVTDNGNVILDVHGMEILDPIAMENAINAIPGVVTV 195 (219) T ss_dssp TT-CEEEECTT----CCCTTSCEEEEEESCCBSCHHHHHHHHHTSTTEEEE T ss_pred HC-CCCCCCCC----CCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEE T ss_conf 27-98435788----575899889981289879999999998379989821 No 13 >2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative; 2.09A {Plasmodium falciparum 3D7} Probab=34.86 E-value=24 Score=15.72 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=27.9 Q ss_pred EECCCCCEEEEEECCC-CCCCHHHHHHHHHCCCHHEH Q ss_conf 9748985479996689-70789899987406462111 Q 537021.9.peg.7 142 FLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 (184) Q Consensus 142 li~~~~~~EVEI~Lp~-f~VSPqIagALKsIpGVl~V 177 (184) ++.++|..-+++..+. +.---++...|+.+|||++. T Consensus 181 ~vTDnGN~IlD~~f~~~i~dp~~l~~~L~~ipGVVe~ 217 (244) T 2f8m_A 181 FITDNKNYIVDFFFTEPIQDLLETCTRIKMTTGVVDH 217 (244) T ss_dssp CCCTTSCEEEEEECSSCCSSHHHHHHHHHTSTTEEEE T ss_pred EEECCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEE T ss_conf 1746998899930898768999999987379999810 No 14 >1bxy_A Protein (ribosomal protein L30); X-RAY crystallography, conformational changes, ribosome; 1.90A {Thermus thermophilus} SCOP: d.59.1.1 PDB: 1giy_X 1ml5_x* 1vsa_X 1vsp_X 1yl3_X 2b66_3 2b9n_3 2b9p_3 2hgj_2 2hgq_2 2hgu_2 2j01_3 2j03_3 2jl6_3 2jl8_3 2v47_3 2v49_3 2wdi_3 2wdj_3 2wdl_3 ... Probab=33.04 E-value=12 Score=17.48 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.2 Q ss_pred CCCCHHHHHHHHHCCCHHEHHHH Q ss_conf 70789899987406462111030 Q 537021.9.peg.7 158 YPISPEIAFDLEHITGITKVVQV 180 (184) Q Consensus 158 f~VSPqIagALKsIpGVl~VeEi 180 (184) ++-||+++|.|+.+.--++|+|+ T Consensus 37 ~~dtp~irGmi~kVkhLV~veev 59 (60) T 1bxy_A 37 LEDTPAIRGNVEKVAHLVRVEVV 59 (60) T ss_dssp EECCHHHHHHHHHTTTTEEEEEE T ss_pred ECCCHHHHHHHHHHHHEEEEEEC T ss_conf 66998898899853433799973 No 15 >2zjr_W 50S ribosomal protein L30; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.59.1.1 PDB: 1nwx_X* 1nwy_X* 1pnu_X 1pny_X 1sm1_X* 1vor_Z 1vou_Z 1vow_Z 1voy_Z 1vp0_Z 1xbp_X* 2zjp_W* 2zjq_W 1nkw_X 3cf5_W* 3dll_W* Probab=30.64 E-value=19 Score=16.31 Aligned_cols=22 Identities=9% Similarity=0.149 Sum_probs=19.3 Q ss_pred CCCCHHHHHHHHHCCCHHEHHH Q ss_conf 7078989998740646211103 Q 537021.9.peg.7 158 YPISPEIAFDLEHITGITKVVQ 179 (184) Q Consensus 158 f~VSPqIagALKsIpGVl~VeE 179 (184) .+-||+++|.|+.+.--++|+| T Consensus 34 ~~~tp~irGmi~kV~hLV~VeE 55 (55) T 2zjr_W 34 VSDTPAVRGMVKTVKHLLEVQE 55 (55) T ss_dssp CCCSHHHHHHHHHTGGGBCCCC T ss_pred ECCCHHHHHHHHHHHHEEEEEC T ss_conf 6799889889997565069849 No 16 >1wvq_A Hypothetical protein PAE2307; phosphorylated histidine, structural genomics, unknown function; HET: NEP; 1.45A {Pyrobaculum aerophilum} PDB: 2gl0_A* 2jb7_A* Probab=27.48 E-value=29 Score=15.17 Aligned_cols=48 Identities=13% Similarity=0.243 Sum_probs=22.5 Q ss_pred CCCCEEEEEEECCCCCCCCCCCE-EEEECC-CHHHHHHHHCCC------EEEEEECCCHHH Q ss_conf 49982899984100167776426-986504-158999732011------099973801578 Q 537021.9.peg.7 66 REKKPYIIVVSQEDKLSLQRDSI-RLLWVE-SLEKKSMEMLDS------LRVYLQDRSPLR 118 (184) Q Consensus 66 e~gkpvii~VsAe~rle~eg~~L-Ri~~ve-pLD~aAa~~~kg------LRIfVrD~~pL~ 118 (184) -||-+|=|.- +|+ .|++| |....+ .|-+.|.+.... .=||++|.=||. T Consensus 43 ~p~ikFGiAF-cEA----SG~~LvR~~GnD~~L~~lA~~na~~IgAGH~Fvi~l~~a~PIN 98 (167) T 1wvq_A 43 VPGVKFGIAF-CEA----SGKRLVRHEANDEELRNLAIDLCKKIAAGHVFVIYIRNAWPIN 98 (167) T ss_dssp CTTCEEEEEE-ECC----STTCEEEEEESCHHHHHHHHHHHHHHCCTTEEEEEEESSCHHH T ss_pred CCCCEEEEEE-ECC----CCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHH T ss_conf 8997589998-316----7862788428879999999999997568958999945747725 No 17 >1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12 Probab=27.00 E-value=33 Score=14.89 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=41.0 Q ss_pred HHCCCEEEEEEC-CCHHHHHHHHHHHHHHCCCCCCCCEE-EEE-EC--CC--CCEEEEEECCCCCCCHHHHHHHHHCCCH Q ss_conf 320110999738-01578999996112210378887139-999-74--89--8547999668970789899987406462 Q 537021.9.peg.7 102 EMLDSLRVYLQD-RSPLREIHKYFENRQTQNYDKQGKIG-LIF-LR--SQ--GKIEIEITLDHYPISPEIAFDLEHITGI 174 (184) Q Consensus 102 ~~~kgLRIfVrD-~~pL~sI~s~Le~~~~~~~~G~G~V~-Lvl-i~--~~--~~~EVEI~Lp~f~VSPqIagALKsIpGV 174 (184) .|..+|+|...| +..|..|.+.+... ++-|. +.. .. +. +...+.+++..-.+ .++...|+++|+| T Consensus 2 ~ml~aL~I~a~DRpGVLadIT~IIAe~-------giNI~sI~q~i~~~g~~~g~~~I~~EiE~~dl-e~LI~kLr~L~~V 73 (223) T 1y7p_A 2 HMLRGLRIIAENKIGVLRDLTTIIAEE-------GGNITFAQTFLIKHGEHEGKALIYFEIEGGDF-EKILERVKTFDYI 73 (223) T ss_dssp --CEEEEEEEECCTTHHHHHHHHCC-----------CEEEEEEEECCSSTTTTEEEEEEEECSSCH-HHHHHHHHTCTTE T ss_pred CCEEEEEEEEECCCCHHHHHHHHHHHC-------CCCEEEEEEECCCCCCCCEEEEEEEEECCCCH-HHHHHHHHCCCCC T ss_conf 615899999956889699999999966-------99966798513468876449999998145789-9999999779996 Q ss_pred HEHHH Q ss_conf 11103 Q 537021.9.peg.7 175 TKVVQ 179 (184) Q Consensus 175 l~VeE 179 (184) .+|+- T Consensus 74 ~~Ve~ 78 (223) T 1y7p_A 74 IEIEE 78 (223) T ss_dssp EEEEE T ss_pred EEEEE T ss_conf 08999 No 18 >2ekm_A Hypothetical protein ST1511; NPPSFA, national project on protein structural and functional analyses; 2.06A {Sulfolobus tokodaii} Probab=26.17 E-value=32 Score=14.93 Aligned_cols=33 Identities=15% Similarity=0.058 Sum_probs=15.5 Q ss_pred CCCCEEEEEEECCCCCCCCCCCE-EEEECC-CHHHHHHHH Q ss_conf 49982899984100167776426-986504-158999732 Q 537021.9.peg.7 66 REKKPYIIVVSQEDKLSLQRDSI-RLLWVE-SLEKKSMEM 103 (184) Q Consensus 66 e~gkpvii~VsAe~rle~eg~~L-Ri~~ve-pLD~aAa~~ 103 (184) -||-.|=|.- +|+ .|++| |....+ .|-+.|.+. T Consensus 40 vp~ikFGiAF-cEA----SG~~LvR~~GnD~~L~~lA~~n 74 (162) T 2ekm_A 40 SPHLKFGIAF-CEA----SGKRLIRWDGNDEELIKLAQQT 74 (162) T ss_dssp CSSCEEEEEE-ECC----STTCEEEEEESCHHHHHHHHHH T ss_pred CCCCEEEEEE-ECC----CCCEEEEECCCCHHHHHHHHHH T ss_conf 8987588998-316----7870788328879999999999 No 19 >1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3 Probab=25.53 E-value=35 Score=14.73 Aligned_cols=59 Identities=14% Similarity=0.040 Sum_probs=30.0 Q ss_pred HHHHHHCCCCCEEEEEHHHHHHH----------------------HHHHHHCCCCEEEEEEECCCCCCCC--CCCEEEEE Q ss_conf 35553102787522105899999----------------------8787524998289998410016777--64269865 Q 537021.9.peg.7 37 MKLQEAEEDPNFLSLQEQQQLEE----------------------EKPRLLREKKPYIIVVSQEDKLSLQ--RDSIRLLW 92 (184) Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~le~----------------------~~~~LLe~gkpvii~VsAe~rle~e--g~~LRi~~ 92 (184) +.+..+|.||+.-++.|.++.++ .--.++ |+.+++.+.+...--.+ .++.++.. T Consensus 81 l~~~i~D~Tg~~~~~~F~~~a~~l~G~sA~el~~~~~~~~~~~~~~~~~l~--~k~~~f~lrvk~e~yn~e~r~k~~v~~ 158 (181) T 1l1o_C 81 LSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNAN--FRSFIFRVRVKVETYNDESRIKATVMD 158 (181) T ss_dssp EEEEEECSSCEEEEEEEHHHHHHHHSSCHHHHHHHTTSCHHHHHHHHHHTT--TCEEEEEEEEECCCC-----CEEEEEE T ss_pred EEEEEECCCCCEEEEEEHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHC--CCEEEEEEEEEECCCCCEEEEEEEEEE T ss_conf 999998289979999807769998499999999988536789999999860--938999999986265983679999999 Q ss_pred CCCHH Q ss_conf 04158 Q 537021.9.peg.7 93 VESLE 97 (184) Q Consensus 93 vepLD 97 (184) ++|+| T Consensus 159 i~~vd 163 (181) T 1l1o_C 159 VKPVD 163 (181) T ss_dssp EEECC T ss_pred EEECC T ss_conf 37589 No 20 >2d16_A Hypothetical protein PH1918; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.65A {Pyrococcus horikoshii OT3} Probab=25.21 E-value=32 Score=14.92 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=14.6 Q ss_pred CCCCEEEEEEECCCCCCCCCCCE-EEEECC-CHHHHHHHH Q ss_conf 49982899984100167776426-986504-158999732 Q 537021.9.peg.7 66 REKKPYIIVVSQEDKLSLQRDSI-RLLWVE-SLEKKSMEM 103 (184) Q Consensus 66 e~gkpvii~VsAe~rle~eg~~L-Ri~~ve-pLD~aAa~~ 103 (184) -||-+|=|.- +|++ ++| |....+ .|-+.|.+. T Consensus 40 vp~ikFGiAF-cEAS-----~~LvR~~GnD~~L~~lA~~n 73 (162) T 2d16_A 40 VPGIKFGIAM-NEAK-----PQLTRYTGNDPELEALAAKN 73 (162) T ss_dssp STTCEEEEEE-EETT-----TTEEEEEESCHHHHHHHHHH T ss_pred CCCCEEEEEE-ECCC-----CCEEEECCCCHHHHHHHHHH T ss_conf 8986688886-3167-----74686318879999999999 No 21 >2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A Probab=22.59 E-value=39 Score=14.37 Aligned_cols=70 Identities=13% Similarity=0.156 Sum_probs=49.2 Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE-CCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEHHHHHCC Q ss_conf 110999738015789999961122103788871399997-4898547999668970789899987406462111030307 Q 537021.9.peg.7 105 DSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFL-RSQGKIEIEITLDHYPISPEIAFDLEHITGITKVVQVIHN 183 (184) Q Consensus 105 kgLRIfVrD~~pL~sI~s~Le~~~~~~~~G~G~V~Lvli-~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~VeEi~~~ 183 (184) -++=|+.+ +..+..+++.|..- . .+.++.. .+.|.--|-|+=+...-.-+...+|+.+|||+.+.=+.|. T Consensus 8 sSlVV~~~-Pe~~~~V~~~l~~~-----~---g~EIh~~d~~~GKiVVtiE~~~~~~~~~~i~~I~~l~GVlsa~lVY~~ 78 (95) T 2jsx_A 8 CSLVVQAK-SERISDISTQLNAF-----P---GCEVAVSDAPSGQLIVVVEAEDSETLIQTIESVRNVEGVLAVSLVYHQ 78 (95) T ss_dssp EEEEEEEC-TTSHHHHHHHHTTS-----T---TEEEEEEETTTTEEEEEEEESSHHHHHHHHHHHTTSTTEEEEEESSCC T ss_pred EEEEEEEC-HHHHHHHHHHHHCC-----C---CCEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEEEE T ss_conf 88999978-78899999999759-----9---978962038897099999739867999999998769983278677887 Done!