BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 537021.9.peg.754_1 (184 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done Results from round 1 >gi|315122785|ref|YP_004063274.1| DNA polymerase III subunit alpha [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496187|gb|ADR52786.1| DNA polymerase III subunit alpha [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 1226 Score = 251 bits (642), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 124/181 (68%), Positives = 150/181 (82%) Query: 4 IFFPKNNNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPR 63 IFFP N+ KK + N DFL LEDCYDH+IE KLQEAEEDPNFLS+QEQ++LE++KP Sbjct: 1045 IFFPNYNSSNRKKTSNKNRDFLTLEDCYDHSIERKLQEAEEDPNFLSVQEQRKLEKKKPY 1104 Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LLREK PYII VSQED +S++RDS+RLL V+SL+ KSMEML SL++YLQD SPL EIHKY Sbjct: 1105 LLREKNPYIIFVSQEDMVSVKRDSVRLLLVQSLKNKSMEMLVSLKIYLQDHSPLTEIHKY 1164 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKVVQVIHN 183 F+NRQ Q++DK GKI L+F+R Q +IE+EITLD YPIS EI+FDLEHI GI KVV +I + Sbjct: 1165 FQNRQVQHHDKHGKIDLVFVRLQEEIELEITLDQYPISLEISFDLEHIAGIMKVVPIIRD 1224 Query: 184 E 184 E Sbjct: 1225 E 1225 >gi|222148298|ref|YP_002549255.1| DNA polymerase III subunit alpha [Agrobacterium vitis S4] gi|221735286|gb|ACM36249.1| DNA polymerase III alpha chain [Agrobacterium vitis S4] Length = 1179 Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V+ E++ + +R+ +SLE+KS++M +LRVYL+D SPLR + + Sbjct: 1070 LLESGKSLVITVAAEERP--EGIGLRIQTAQSLEEKSLQMQKTLRVYLRDSSPLRALAAH 1127 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 N G + + ++ G+ EIE+ L+ + I+PEIA + G+ V Sbjct: 1128 L------NTKGDGLVSFVVIKEDGRREIEVELNQRFRITPEIAAAMRSAPGVVDV 1176 >gi|222085600|ref|YP_002544130.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter K84] gi|221723048|gb|ACM26204.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter K84] Length = 1187 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 8/106 (7%) Query: 73 IVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNY 132 +V +Q D+ + S+RL +SLE+KS++M +LRVY++D PL+ + + N Sbjct: 1086 VVTAQADERP-EGISLRLQTAQSLEEKSLQMQKALRVYVRDSGPLKAVAAHL------NA 1138 Query: 133 DKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 G + I ++ +GK E+E+ L + Y I+PEIA L G+ V Sbjct: 1139 KGDGLVSFIVIKEEGKREVEVVLAEKYRITPEIAAALRTAPGVIDV 1184 >gi|325292654|ref|YP_004278518.1| DNA polymerase III subunit alpha [Agrobacterium sp. H13-3] gi|325060507|gb|ADY64198.1| DNA polymerase III alpha subunit [Agrobacterium sp. H13-3] Length = 1166 Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ +SLE+KS++M +LRVY++D PL+ + ++ Sbjct: 1057 LLEVGKSLVITVQAEERP--EGIGLRIQTAQSLEEKSVQMQKALRVYVRDSGPLKTVARH 1114 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 N G + I ++ +G EIE+ L + Y ISPEIA L G+ V Sbjct: 1115 L------NTKGDGSVYFIVIKDEGSREIEVELTEKYRISPEIAAALRSAPGVVDV 1163 >gi|241204110|ref|YP_002975206.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858000|gb|ACS55667.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1165 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +++ + E++ + +R+ ++SLE+KS++M +LRVY++D PLR + + Sbjct: 1056 VLESGKSFVLTATGEERP--EGIGLRIQTIQSLEEKSLQMQKALRVYVRDSGPLRMVAGH 1113 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 N G + I ++ GK E+E+ L + Y I+PEIA L G+ V Sbjct: 1114 L------NAKGDGLVSFIVIKEDGKREVEVALSEKYRITPEIAAALRAAPGVVDV 1162 >gi|110633608|ref|YP_673816.1| DNA polymerase III subunit alpha [Mesorhizobium sp. BNC1] gi|110284592|gb|ABG62651.1| DNA polymerase III, alpha subunit [Chelativorans sp. BNC1] Length = 1172 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 65/115 (56%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL + +I+VS ED+ + ++R+ V+SLE ++ M +LR+YL+D P+ I Sbjct: 1063 LLEPGRSVVIMVSAEDRP--EGINLRIQTVQSLEAEASCMQKALRIYLRDPQPIAAISSQ 1120 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 R +G++ LI ++ G+ EIEI L + Y ISP++A + ++G+ V Sbjct: 1121 LTTR------GEGQVSLIVIKDGGRGEIEIGLPERYRISPQVAAAMRAVSGVVDV 1169 >gi|116251489|ref|YP_767327.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv. viciae 3841] gi|115256137|emb|CAK07218.1| putative DNA polymerase III alpha subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 1165 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +++ + E++ + +R+ ++SLE+KS++M +LRVY++D PLR + + Sbjct: 1056 VLESGKSFVLTATGEERP--EGIGLRIQTIQSLEEKSLQMQKALRVYVRDSGPLRMVAGH 1113 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 N G + I ++ GK E+E+ L + Y I+PEIA L G+ V Sbjct: 1114 L------NAKGDGLVSFIVIKEDGKREVEVALSEKYRITPEIAAALRAAPGVVDV 1162 >gi|153009730|ref|YP_001370945.1| DNA polymerase III subunit alpha [Ochrobactrum anthropi ATCC 49188] gi|151561618|gb|ABS15116.1| DNA polymerase III, alpha subunit [Ochrobactrum anthropi ATCC 49188] Length = 1163 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M +LR+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKALRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L H Y +SP+IA ++ I G+ V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVDV 1160 >gi|17987420|ref|NP_540054.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M] gi|17983111|gb|AAL52318.1| DNA polymerase iii, alpha chain [Brucella melitensis bv. 1 str. 16M] Length = 1178 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1069 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1126 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L H Y +SP+IA ++ I G+ +V Sbjct: 1127 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1175 >gi|190891309|ref|YP_001977851.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652] gi|190696588|gb|ACE90673.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652] Length = 1165 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +++ + E++ + +R+ ++SLE+KS++M +LRVY++D PL+ + + Sbjct: 1056 MLESGKSFLLTATGEERP--EGIGLRIQTIQSLEEKSLQMQKALRVYIRDSGPLKMVAGH 1113 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 N G + I ++ +GK E+E+ L + Y I+PEIA L G+ V Sbjct: 1114 L------NAKGDGLVSFIVIKEEGKREVEVALPEKYRITPEIAAALRAAPGVVDV 1162 >gi|254718932|ref|ZP_05180743.1| DNA polymerase III subunit alpha [Brucella sp. 83/13] gi|265983919|ref|ZP_06096654.1| DNA polymerase III subunit alpha [Brucella sp. 83/13] gi|306838837|ref|ZP_07471668.1| DNA polymerase III, alpha subunit [Brucella sp. NF 2653] gi|264662511|gb|EEZ32772.1| DNA polymerase III subunit alpha [Brucella sp. 83/13] gi|306406121|gb|EFM62369.1| DNA polymerase III, alpha subunit [Brucella sp. NF 2653] Length = 1163 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L H Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|254693562|ref|ZP_05155390.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya] gi|261213827|ref|ZP_05928108.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya] gi|260915434|gb|EEX82295.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya] Length = 1163 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L H Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|254689079|ref|ZP_05152333.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870] gi|256257328|ref|ZP_05462864.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68] gi|260754577|ref|ZP_05866925.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870] gi|260883604|ref|ZP_05895218.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68] gi|297248177|ref|ZP_06931895.1| DNA polymerase III subunit alpha [Brucella abortus bv. 5 str. B3196] gi|260674685|gb|EEX61506.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870] gi|260873132|gb|EEX80201.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68] gi|297175346|gb|EFH34693.1| DNA polymerase III subunit alpha [Brucella abortus bv. 5 str. B3196] Length = 1163 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L H Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|163843098|ref|YP_001627502.1| DNA polymerase III subunit alpha [Brucella suis ATCC 23445] gi|163673821|gb|ABY37932.1| DNA polymerase III, alpha subunit [Brucella suis ATCC 23445] Length = 1163 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L H Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|161618789|ref|YP_001592676.1| DNA polymerase III subunit alpha [Brucella canis ATCC 23365] gi|254704138|ref|ZP_05165966.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686] gi|256044502|ref|ZP_05447406.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. Rev.1] gi|256060935|ref|ZP_05451093.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33] gi|256113358|ref|ZP_05454216.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str. Ether] gi|260563856|ref|ZP_05834342.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M] gi|260566613|ref|ZP_05837083.1| DNA polymerase III subunit alpha [Brucella suis bv. 4 str. 40] gi|261324935|ref|ZP_05964132.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33] gi|261754804|ref|ZP_05998513.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686] gi|265990926|ref|ZP_06103483.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. Rev.1] gi|265994764|ref|ZP_06107321.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str. Ether] gi|161335600|gb|ABX61905.1| DNA polymerase III, alpha subunit [Brucella canis ATCC 23365] gi|260153872|gb|EEW88964.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M] gi|260156131|gb|EEW91211.1| DNA polymerase III subunit alpha [Brucella suis bv. 4 str. 40] gi|261300915|gb|EEY04412.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33] gi|261744557|gb|EEY32483.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686] gi|262765877|gb|EEZ11666.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str. Ether] gi|263001710|gb|EEZ14285.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. Rev.1] gi|326408847|gb|ADZ65912.1| DNA polymerase III subunit alpha [Brucella melitensis M28] gi|326538562|gb|ADZ86777.1| DNA polymerase III, alpha subunit [Brucella melitensis M5-90] Length = 1163 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L H Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|306843761|ref|ZP_07476360.1| DNA polymerase III, alpha subunit [Brucella sp. BO1] gi|306275952|gb|EFM57665.1| DNA polymerase III, alpha subunit [Brucella sp. BO1] Length = 1163 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L H Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|294852181|ref|ZP_06792854.1| DNA polymerase III subunit alpha [Brucella sp. NVSL 07-0026] gi|294820770|gb|EFG37769.1| DNA polymerase III subunit alpha [Brucella sp. NVSL 07-0026] Length = 1188 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1079 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1136 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L H Y +SP+IA ++ I G+ +V Sbjct: 1137 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1185 >gi|256369256|ref|YP_003106764.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915] gi|255999416|gb|ACU47815.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915] Length = 1163 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L H Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|237815260|ref|ZP_04594258.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A] gi|237790097|gb|EEP64307.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A] Length = 1190 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1081 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1138 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L H Y +SP+IA ++ I G+ +V Sbjct: 1139 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1187 >gi|225852339|ref|YP_002732572.1| DNA polymerase III subunit alpha [Brucella melitensis ATCC 23457] gi|256264162|ref|ZP_05466694.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 2 str. 63/9] gi|225640704|gb|ACO00618.1| DNA polymerase III, alpha subunit [Brucella melitensis ATCC 23457] gi|263094380|gb|EEZ18225.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 2 str. 63/9] Length = 1163 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L H Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|23501712|ref|NP_697839.1| DNA polymerase III subunit alpha [Brucella suis 1330] gi|23347636|gb|AAN29754.1| DNA polymerase III, alpha subunit [Brucella suis 1330] Length = 1163 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L H Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|306841939|ref|ZP_07474617.1| DNA polymerase III, alpha subunit [Brucella sp. BO2] gi|306287972|gb|EFM59380.1| DNA polymerase III, alpha subunit [Brucella sp. BO2] Length = 1163 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L H Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|148559880|ref|YP_001258802.1| DNA polymerase III subunit alpha [Brucella ovis ATCC 25840] gi|148371137|gb|ABQ61116.1| DNA polymerase III, alpha subunit [Brucella ovis ATCC 25840] Length = 1163 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L H Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|254701591|ref|ZP_05163419.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513] gi|261752144|ref|ZP_05995853.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513] gi|261741897|gb|EEY29823.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513] Length = 1163 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMRKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L H Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|227821642|ref|YP_002825612.1| DNA polymerase III subunit alpha [Sinorhizobium fredii NGR234] gi|227340641|gb|ACP24859.1| DNA polymerase III, alpha subunit [Sinorhizobium fredii NGR234] Length = 1165 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K ++ V E++ + +R+ + SLE++S++M +LRVY++D PLR I + Sbjct: 1056 LLEAGKSLVMTVDAEERP--EGIGLRIRTLRSLEEESLQMQKALRVYVRDSGPLRSIASH 1113 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 N G + I ++ G+ EIE+ L + Y ISPEIA L G+ V Sbjct: 1114 L------NAKGDGLVSFIVIKDNGQREIEVELSEKYRISPEIAAALRSAPGVVDV 1162 >gi|62289774|ref|YP_221567.1| DNA polymerase III subunit alpha [Brucella abortus bv. 1 str. 9-941] gi|82699702|ref|YP_414276.1| DNA polymerase III subunit alpha [Brucella melitensis biovar Abortus 2308] gi|189024017|ref|YP_001934785.1| DNA polymerase III subunit alpha [Brucella abortus S19] gi|254697213|ref|ZP_05159041.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str. 86/8/59] gi|254730110|ref|ZP_05188688.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292] gi|260545478|ref|ZP_05821219.1| DNA polymerase III subunit alpha subunit [Brucella abortus NCTC 8038] gi|260757800|ref|ZP_05870148.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292] gi|260761623|ref|ZP_05873966.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str. 86/8/59] gi|62195906|gb|AAX74206.1| DnaE-2, DNA polymerase III, alpha subunit [Brucella abortus bv. 1 str. 9-941] gi|82615803|emb|CAJ10801.1| Phosphoesterase PHP, N-terminal:PHP domain C-terminal region:OB-fold nucleic acid binding domain:DNA polymerase III alpha sub [Brucella melitensis biovar Abortus 2308] gi|189019589|gb|ACD72311.1| DNA polymerase III subunit alpha [Brucella abortus S19] gi|260096885|gb|EEW80760.1| DNA polymerase III subunit alpha subunit [Brucella abortus NCTC 8038] gi|260668118|gb|EEX55058.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292] gi|260672055|gb|EEX58876.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str. 86/8/59] Length = 1163 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L H Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|209548886|ref|YP_002280803.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534642|gb|ACI54577.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 1165 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +++ + E++ + +R+ ++SLE+KS++M +LRVY++D PL+ + + Sbjct: 1056 VLESGKSFVLTATGEERP--EGIGLRVQTIQSLEEKSLQMQKALRVYVRDSGPLKMVAGH 1113 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 R G + I ++ +GK E+E+ L + Y I+PEIA L G+ V Sbjct: 1114 LNAR------GDGLVSFIVIKEEGKREVEVALAEKYRITPEIAAALRAAPGVVDV 1162 >gi|260168558|ref|ZP_05755369.1| DNA polymerase III subunit alpha [Brucella sp. F5/99] gi|261758031|ref|ZP_06001740.1| DNA polymerase III subunit alpha [Brucella sp. F5/99] gi|261738015|gb|EEY26011.1| DNA polymerase III subunit alpha [Brucella sp. F5/99] Length = 1163 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L H Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQHEVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|254713932|ref|ZP_05175743.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1] gi|254717010|ref|ZP_05178821.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1] gi|261218817|ref|ZP_05933098.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1] gi|261321684|ref|ZP_05960881.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1] gi|260923906|gb|EEX90474.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1] gi|261294374|gb|EEX97870.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1] Length = 1163 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L H Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQHEVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|254706961|ref|ZP_05168789.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10] gi|254709931|ref|ZP_05171742.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94] gi|256031424|ref|ZP_05445038.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1] gi|256159545|ref|ZP_05457313.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1] gi|256254832|ref|ZP_05460368.1| DNA polymerase III subunit alpha [Brucella ceti B1/94] gi|261222013|ref|ZP_05936294.1| DNA polymerase III subunit alpha [Brucella ceti B1/94] gi|261314424|ref|ZP_05953621.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10] gi|261317477|ref|ZP_05956674.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94] gi|265988513|ref|ZP_06101070.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1] gi|265997977|ref|ZP_06110534.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1] gi|260920597|gb|EEX87250.1| DNA polymerase III subunit alpha [Brucella ceti B1/94] gi|261296700|gb|EEY00197.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94] gi|261303450|gb|EEY06947.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10] gi|262552445|gb|EEZ08435.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1] gi|264660710|gb|EEZ30971.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1] Length = 1163 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L H Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQHEVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|225627320|ref|ZP_03785357.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo] gi|225617325|gb|EEH14370.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo] Length = 1190 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1081 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1138 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L H Y +SP+IA ++ I G+ +V Sbjct: 1139 FNTR------GDGQVSLIVIKDNGQHEVEIELPHRYRVSPQIASAMKAIQGVVEV 1187 >gi|327194832|gb|EGE61666.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CNPAF512] Length = 1165 Score = 57.4 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +++ + E++ + +R+ ++SLE+KS++M +LRVY++D PL+ + + Sbjct: 1056 MLESGKSFLLTATGEERP--EGIGLRIQTIQSLEEKSLQMQKALRVYVRDSGPLKMVAGH 1113 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 N G + I ++ +GK E+E+ L + Y I+PEIA L G+ V Sbjct: 1114 L------NAKGDGLVSFIVIKEEGKREVEVALPEKYRITPEIAAALRAAPGVVDV 1162 >gi|218513825|ref|ZP_03510665.1| DNA polymerase III subunit alpha [Rhizobium etli 8C-3] Length = 86 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 7/86 (8%) Query: 93 VESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIE 152 ++SLE+KS++M +LRVY++D PL+ + + N G + I ++ +GK E+E Sbjct: 4 IQSLEEKSLQMQKALRVYIRDSGPLKMVAGHL------NAKGDGLVSFIVIKEEGKREVE 57 Query: 153 ITL-DHYPISPEIAFDLEHITGITKV 177 + L + Y I+PEIA L G+ V Sbjct: 58 VALPEKYRITPEIAAALRAAPGVVDV 83 >gi|15888619|ref|NP_354300.1| DNA polymerase III subunit alpha [Agrobacterium tumefaciens str. C58] gi|15156343|gb|AAK87085.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58] Length = 1167 Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ +SLE+KS++M +LRVY++D PL+ + ++ Sbjct: 1058 LLEVGKSLVINVQAEERP--EGIGLRIQTAQSLEEKSVQMQKALRVYVRDSGPLKTVARH 1115 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 N G + I ++ +G EIE+ L + Y ISPEIA L G+ V Sbjct: 1116 L------NTKGDGSVYFIVIKDEGSREIEVELTEKYRISPEIAAALRSAPGVVDV 1164 >gi|150396144|ref|YP_001326611.1| DNA polymerase III subunit alpha [Sinorhizobium medicae WSM419] gi|150027659|gb|ABR59776.1| DNA polymerase III, alpha subunit [Sinorhizobium medicae WSM419] Length = 1165 Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K ++ V E++ + +R+ + SLE++S++M +LRVY++D PLR I + Sbjct: 1056 LLEAGKSLVMTVDAEERP--EGIGLRIRTLRSLEEESLQMQKALRVYVRDCGPLRSIASH 1113 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 R G + I ++ G+ EIE+ L + Y ISPEIA L G+ V Sbjct: 1114 LNAR------GDGLVSFIVIKDNGQREIEVELSEKYRISPEIAAALRSAPGVVDV 1162 >gi|15965042|ref|NP_385395.1| DNA polymerase III subunit alpha [Sinorhizobium meliloti 1021] gi|307301114|ref|ZP_07580883.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C] gi|15074221|emb|CAC45868.1| Probable DNA polymerase III, alpha chain [Sinorhizobium meliloti 1021] gi|306904069|gb|EFN34655.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C] Length = 1169 Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K ++ V E++ + +R+ + SLE++S++M +LRVY++D PLR I + Sbjct: 1060 LLEPGKSLVMTVDAEERP--EGIGLRIRTLRSLEEESLQMQKALRVYVRDCGPLRSIASH 1117 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 N G + I ++ G+ EIE+ L+ Y ISPEIA L G+ V Sbjct: 1118 L------NAKGDGLVSFIVIKDNGQREIEVELNEKYRISPEIAAALRSAPGVVDV 1166 >gi|307317847|ref|ZP_07597285.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83] gi|306896609|gb|EFN27357.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83] Length = 1169 Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K ++ V E++ + +R+ + SLE++S++M +LRVY++D PLR I + Sbjct: 1060 LLEPGKSLVMTVDAEERP--EGIGLRIRTLRSLEEESLQMQKALRVYVRDCGPLRSIASH 1117 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 N G + I ++ G+ EIE+ L+ Y ISPEIA L G+ V Sbjct: 1118 L------NAKGDGLVSFIVIKDNGQREIEVELNEKYRISPEIAAALRSAPGVVDV 1166 >gi|158423315|ref|YP_001524607.1| DNA polymerase III subunit alpha [Azorhizobium caulinodans ORS 571] gi|158330204|dbj|BAF87689.1| DNA polymerase III alpha subunit [Azorhizobium caulinodans ORS 571] Length = 1144 Score = 50.8 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 8/115 (6%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL P +++V+ E L + +R+ E L++ + +LR+++ PL I Sbjct: 1034 LLEPGTPVLMMVAAE--LQGEDVRVRIQSCERLDEATARHHKNLRIFVNSTEPLTGI--- 1088 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 +R+ G++ L+ L GK E+EI LD YP+SP+IA ++ I G+ V Sbjct: 1089 --SRRLSGGKGDGEVSLVLLMDGGKAEVEIRLDGRYPVSPQIAGAIKAIPGVVAV 1141 >gi|163759322|ref|ZP_02166408.1| DNA polymerase III subunit alpha [Hoeflea phototrophica DFL-43] gi|162283726|gb|EDQ34011.1| DNA polymerase III subunit alpha [Hoeflea phototrophica DFL-43] Length = 1189 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ ESLE ++ +LRV+++D P+ + + Sbjct: 1080 LLEPGKSIVITVLAEERP--EGVGLRIQTAESLEDRAARGQTALRVFVRDAKPINSVSTH 1137 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 + R +G++ I ++ G EIE+TL D Y ISP++A L+ G+ V Sbjct: 1138 LKAR------GEGQVSFIMIKDGGCREIEVTLADRYKISPQMAAALKAAPGVLDV 1186 >gi|90419565|ref|ZP_01227475.1| DNA polymerase III alpha subunit [Aurantimonas manganoxydans SI85-9A1] gi|90336502|gb|EAS50243.1| DNA polymerase III alpha subunit [Aurantimonas manganoxydans SI85-9A1] Length = 1153 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 7/92 (7%) Query: 87 SIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146 S R+ V+SLE +++ M +LRV+++D +PL+ R D +I L+ +R Sbjct: 1065 SFRVQSVQSLEDEAVRMQKALRVFMRDANPLQAF------RSQLRADGDSEISLVLVRDG 1118 Query: 147 GKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 G+ E+EITL Y +SP++A ++ G+ V Sbjct: 1119 GEREVEITLPGRYRVSPQMASVVKAAPGVLDV 1150 >gi|328543710|ref|YP_004303819.1| DNA polymerase III subunit alpha [Polymorphum gilvum SL003B-26A1] gi|326413454|gb|ADZ70517.1| DNA polymerase III subunit alpha [Polymorphum gilvum SL003B-26A1] Length = 1146 Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 9/114 (7%) Query: 65 LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYF 124 L + +I+VS + + S+R+ V+ +E + + SLRV+L+D PL+ + + Sbjct: 1038 LEPGRSVVILVSAD--MRDDEPSLRVEQVDPIEAVATRVQKSLRVFLRDERPLKSLARQL 1095 Query: 125 ENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 R G++ ++ L G+ E+E+ L Y +SPEIA L+ + G+T V Sbjct: 1096 GGR------GDGEVNVVVLLDGGRREVEVKLPGRYRLSPEIAGALKAVPGVTDV 1143 >gi|114707392|ref|ZP_01440289.1| DNA polymerase III subunit alpha [Fulvimarina pelagi HTCC2506] gi|114537273|gb|EAU40400.1| DNA polymerase III subunit alpha [Fulvimarina pelagi HTCC2506] Length = 1151 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 8/116 (6%) Query: 63 RLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHK 122 R + E +IV +Q ++ + S R V+SLE +++ M +LR++L+D +P+ Sbjct: 1040 RDVMEPGASVIVTAQAEERP-EGVSFRASNVQSLEDEAVRMQKALRIFLRDENPI----D 1094 Query: 123 YFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 F++ N D + + ++ LR G E+EI L D Y +SP+IA ++ G+ V Sbjct: 1095 AFQSHLQPNGDSE--VSIVLLRDDGGREVEIMLADKYRVSPQIASAIKAAHGVVDV 1148 >gi|218659790|ref|ZP_03515720.1| DNA polymerase III subunit alpha [Rhizobium etli IE4771] Length = 248 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 8/92 (8%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +++ + E++ + +R+ ++SLE+KS++M +LRVY++D PL+ + + Sbjct: 160 MLESGKSFLLTATGEERP--EGIGLRIQTIQSLEEKSLQMQKALRVYIRDSGPLKMVAGH 217 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL 155 N G + I ++ +GK E+E+ L Sbjct: 218 L------NAKGDGLVSFIVIKEEGKREVEVAL 243 >gi|218459887|ref|ZP_03499978.1| DNA polymerase III subunit alpha [Rhizobium etli Kim 5] Length = 74 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 7/77 (9%) Query: 102 EMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPI 160 +M +LRVY++D PL+ + + N G + I ++ +GK E+E+ L + Y I Sbjct: 1 QMQKALRVYIRDSGPLKMVAGHL------NAKGDGLVSFIVIKEEGKREVEVALPEKYRI 54 Query: 161 SPEIAFDLEHITGITKV 177 +PEIA L G+ V Sbjct: 55 TPEIAAALRAAPGVVDV 71 >gi|86357261|ref|YP_469153.1| DNA polymerase III subunit alpha [Rhizobium etli CFN 42] gi|86281363|gb|ABC90426.1| DNA polymerase III alpha subunit protein [Rhizobium etli CFN 42] Length = 1165 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 8/92 (8%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +++ + E++ + +R+ ++SLE+KS++M +LRVY++D PL+ + + Sbjct: 1056 VLESGKSFLLTATGEERP--EGIGLRIQTIQSLEEKSLQMQKALRVYIRDSGPLKMVAGH 1113 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL 155 N G + I ++ +GK E+E+ L Sbjct: 1114 L------NAKGDGLVSFIVIKEEGKREVEVAL 1139 >gi|154248204|ref|YP_001419162.1| DNA polymerase III subunit alpha [Xanthobacter autotrophicus Py2] gi|154162289|gb|ABS69505.1| DNA polymerase III, alpha subunit [Xanthobacter autotrophicus Py2] Length = 1150 Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 60/115 (52%), Gaps = 4/115 (3%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL P +++V+ E L+ + +R+ E L+ + LR++L+ P+ I + Sbjct: 1036 LLEPGTPLLMMVAAE--LNGEDVRVRINSCEKLDPVTARHQKGLRIFLRSPEPIEGIARR 1093 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 + +T + G++ LI + + E+E++L YPISP+IA ++ I G+ + Sbjct: 1094 LADGKTVDAG-SGEVSLILMVEDARAEVEVSLPGKYPISPQIAGAIKAIPGVVAI 1147 >gi|13471011|ref|NP_102580.1| DNA polymerase III subunit alpha [Mesorhizobium loti MAFF303099] gi|14021755|dbj|BAB48366.1| DNA polymerase III alpha subunit [Mesorhizobium loti MAFF303099] Length = 1175 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL + +I V+ ED+ + ++R+ V+SLE+++ + +LR+++++ P I Sbjct: 1066 LLEAGRSVVITVAAEDRP--EGVNLRINSVQSLEEEASRIQKALRIFVRNEGPASIIQSQ 1123 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 R + ++ +I ++ + + E+EI L Y +SP+IA + + G+ +V Sbjct: 1124 LTQR------GESQVSIIVIKEEAQGEVEIALQGGYRVSPQIASAMRAVPGVVEV 1172 >gi|296447359|ref|ZP_06889286.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b] gi|296255138|gb|EFH02238.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b] Length = 1150 Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 7/93 (7%) Query: 89 RLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGK 148 R+ VE L + LR++L+D +PL +I R +G++ L+ +G Sbjct: 1064 RITAVEPLAAAVAKTQKGLRIFLRDAAPLDKIKSRLSAR------GEGEVSLVVSLERGA 1117 Query: 149 IEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180 E+EI L Y +SP++A L+ I G+T V V Sbjct: 1118 SEVEIKLPGGYTVSPDMAGALQTIPGVTAVEHV 1150 >gi|260463915|ref|ZP_05812111.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum WSM2075] gi|259030290|gb|EEW31570.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum WSM2075] Length = 1175 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 61/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL + +I V+ ED+ + ++R+ V+SLE ++ + +LR+++++ P I Sbjct: 1066 LLEAGRSVVITVAAEDRP--EGVNLRINSVQSLEDEASRIQKALRIFVRNDGPASMIQSQ 1123 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 R + ++ +I ++ + + E+EI L Y +SP+IA + + G+ +V Sbjct: 1124 LTQR------GESQVSIIVIKDEAQGEVEIALQGGYRVSPQIASAMRAVPGVVEV 1172 >gi|240850744|ref|YP_002972144.1| DNA polymerase III subunit alpha [Bartonella grahamii as4aup] gi|240267867|gb|ACS51455.1| DNA polymerase III subunit alpha [Bartonella grahamii as4aup] Length = 1164 Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +II VS E++ + S+R+ ++SLE++S++ +R++++ L +I Sbjct: 1055 MLEPGKSFIITVSAENRS--EGVSLRIETIQSLEQESLKQHKMMRLFIKTVDMLPQIE-- 1110 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 Q N G++GLI ++ G E+EI L Y ++ +A ++ I G+ V Sbjct: 1111 ----QNLNLGGNGEVGLILIQEDGLREVEIALPKRYKVNSHVANAMKLIQGVVDV 1161 >gi|170744048|ref|YP_001772703.1| DNA polymerase III subunit alpha [Methylobacterium sp. 4-46] gi|168198322|gb|ACA20269.1| DNA polymerase III, alpha subunit [Methylobacterium sp. 4-46] Length = 1168 Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 7/90 (7%) Query: 89 RLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGK 148 R+ E L++ +R+YL+D P+ + + R +G++ LI + G+ Sbjct: 1082 RIQTCEPLDQAVARYQKGMRIYLRDERPIPSVQQRLTTR------GEGEVSLILILDGGE 1135 Query: 149 IEIEITL-DHYPISPEIAFDLEHITGITKV 177 E+E+ L D Y SP+IA L + G+ +V Sbjct: 1136 REVEVKLRDRYQASPQIAGALRAVPGVVQV 1165 >gi|163868512|ref|YP_001609721.1| DNA polymerase III subunit alpha [Bartonella tribocorum CIP 105476] gi|161018168|emb|CAK01726.1| DNA polymerase III alpha subunit [Bartonella tribocorum CIP 105476] Length = 1155 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 61/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +II VS E++ + S+R+ ++SLE ++++ +R++++ L +I Sbjct: 1046 MLEPGKSFIITVSAENRS--EGASLRIETIQSLENEALQQHKMMRLFIKTVDMLPQI--- 1100 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 Q N G++GLI ++ G E+EI L Y ++ +A ++ I G+ V Sbjct: 1101 ---EQNLNLGGNGEVGLILIQEDGLREVEIALPKRYKVNSHVANAMKLIQGVVDV 1152 >gi|49475735|ref|YP_033776.1| DNA polymerase III subunit alpha [Bartonella henselae str. Houston-1] gi|49238542|emb|CAF27778.1| DNA polymerase III alpha subunit [Bartonella henselae str. Houston-1] Length = 1162 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +II VS E++ + S+RL +SLEK++ + +R++++ L +I Sbjct: 1053 ILELGKSFIITVSAENRS--EGVSLRLETAQSLEKEAAQHHKMMRLFIKTVDMLPQI--- 1107 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 +Q N G++ LI ++ G E+EITL Y ++ +A L+ I G+ V Sbjct: 1108 ---QQNLNPSGNGEVALILIQEDGLREVEITLPKRYKVNSRVASALKSIQGVVDV 1159 >gi|118590015|ref|ZP_01547419.1| DNA polymerase III subunit alpha [Stappia aggregata IAM 12614] gi|118437512|gb|EAV44149.1| DNA polymerase III subunit alpha [Stappia aggregata IAM 12614] Length = 1154 Score = 43.9 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 7/92 (7%) Query: 87 SIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146 S+R+ V+ +++ + + S+RV+++D P+ + K + R +G + +I L Sbjct: 1066 SLRIEQVDPIDQMAARLQKSMRVFVRDERPIPSLAKQLQVR------GEGDVTVIVLLEN 1119 Query: 147 GKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 G E+E+ L + +SPEIA L+ + G+T V Sbjct: 1120 GAREVEVKLPGRFRLSPEIAGALKAVPGVTDV 1151 >gi|319407174|emb|CBI80813.1| DNA polymerase III alpha subunit [Bartonella sp. 1-1C] Length = 1140 Score = 42.7 bits (99), Expect = 0.022, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +II V ED+ + S+R+ ++SLE+++++ +R++L+ L +I Sbjct: 1031 MLELGKSFIITVIAEDRS--EGISLRIETIQSLEEQALQCHKMMRIFLKTIDTLSQIE-- 1086 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 Q N + +G++ LI ++ G E+EI L + Y ++ + ++ ++G+ V Sbjct: 1087 ----QNLNSEGKGEVALILIQEDGLREVEIALPERYKVNAHVVNAIKVLSGVVDV 1137 >gi|49474348|ref|YP_032390.1| DNA polymerase III subunit alpha [Bartonella quintana str. Toulouse] gi|49239852|emb|CAF26246.1| DNA polymerase III alpha subunit [Bartonella quintana str. Toulouse] Length = 1162 Score = 42.4 bits (98), Expect = 0.027, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +II VS E++ + S+RL +SLE ++ + +R++++ L +I Sbjct: 1053 MLEPGKSFIITVSAENRS--EGVSLRLETAQSLENEAAQHHKMMRLFIKTVDMLPQIE-- 1108 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 Q N + G++GLI ++ G E+EITL Y + + ++ I G+ V Sbjct: 1109 ----QNLNPNGNGEVGLILIQEDGLREVEITLPKRYKVDSSVVSAMKSIHGVVDV 1159 >gi|307942140|ref|ZP_07657491.1| DNA polymerase III subunit alpha [Roseibium sp. TrichSKD4] gi|307774426|gb|EFO33636.1| DNA polymerase III subunit alpha [Roseibium sp. TrichSKD4] Length = 1159 Score = 42.4 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 7/94 (7%) Query: 85 RDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLR 144 + SIR+ V+ ++K + + S+ V+L+D P+ + ++ + R +G + +I Sbjct: 1069 KPSIRIEQVDPIDKVAANLQKSMMVFLRDERPVESLVRHLKVR------GEGNVTVIVQL 1122 Query: 145 SQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 +G+ E+E+ L Y +SPEIA L+ + G+ V Sbjct: 1123 DRGQREVEVKLPGRYRLSPEIAGALKAVPGVMDV 1156 >gi|220927035|ref|YP_002502337.1| DNA polymerase III subunit alpha [Methylobacterium nodulans ORS 2060] gi|219951642|gb|ACL62034.1| DNA polymerase III, alpha subunit [Methylobacterium nodulans ORS 2060] Length = 1158 Score = 42.4 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 7/90 (7%) Query: 89 RLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGK 148 R+ E L++ +R+YL+D P+ + + R +G++ LI + G+ Sbjct: 1072 RIQTCEPLDQAVARHQKGMRIYLRDERPIASVQQRLTMR------GEGEVSLILILDGGE 1125 Query: 149 IEIEITL-DHYPISPEIAFDLEHITGITKV 177 E+EI L D Y +P+IA L + G+ +V Sbjct: 1126 REVEIRLKDRYQATPQIAGALRAVPGVVQV 1155 >gi|319404155|emb|CBI77748.1| DNA polymerase III alpha subunit [Bartonella rochalimae ATCC BAA-1498] Length = 1162 Score = 41.6 bits (96), Expect = 0.044, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +II V ED+ + S+R+ ++SLE+++++ +R++L+ L +I Sbjct: 1053 MLEPGKSFIITVVAEDRS--EGISLRIETIQSLEEQALQCHKMMRIFLKTIDMLPQIE-- 1108 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 Q N + +G++ L+ ++ G E+EI L + Y ++ + ++ ++G+ V Sbjct: 1109 ----QNLNSEGKGEVALVLIQEDGLREVEIALPERYKVNAHVVNAIKVLSGVVDV 1159 >gi|209885082|ref|YP_002288939.1| DNA polymerase III subunit alpha [Oligotropha carboxidovorans OM5] gi|209873278|gb|ACI93074.1| DNA polymerase III subunit alpha [Oligotropha carboxidovorans OM5] Length = 1157 Score = 41.6 bits (96), Expect = 0.047, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 6/94 (6%) Query: 89 RLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQ----TQNYDKQGKIGLIFLR 144 R+ VE L++ + + +L+++L+D PL I + E+ + + G++ L+ + Sbjct: 1062 RIANVELLDQAAAKTSMALKIFLRDDKPLESIRRRLEDHARGGGAGSSARAGEVTLVMML 1121 Query: 145 SQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 + E+E+ L D Y +SP+IA L+ ITG+ V Sbjct: 1122 DL-ETEVEMRLRDRYKVSPQIAGALKAITGVVDV 1154 >gi|254505207|ref|ZP_05117358.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia alexandrii DFL-11] gi|222441278|gb|EEE47957.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia alexandrii DFL-11] Length = 1138 Score = 40.4 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 7/86 (8%) Query: 93 VESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIE 152 V+ ++K + + S+RV+++D P+ + K R +G + +I L G E+E Sbjct: 1056 VDPIDKVAARLQKSMRVFVRDDRPIASLAKQLTVR------GEGDVTVIVLLENGAREVE 1109 Query: 153 ITL-DHYPISPEIAFDLEHITGITKV 177 + L + +SPEIA L+ + G+T V Sbjct: 1110 VKLPGRFRLSPEIAGALKAVPGVTDV 1135 >gi|121602736|ref|YP_989159.1| DNA polymerase III subunit alpha [Bartonella bacilliformis KC583] gi|120614913|gb|ABM45514.1| DNA polymerase III, alpha subunit [Bartonella bacilliformis KC583] Length = 1161 Score = 40.4 bits (93), Expect = 0.10, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +II VS E++ + S+RL +SLE+++++ +R+++ L +I Sbjct: 1052 MLEPGKSFIITVSAENRS--EGISLRLETAQSLEEEAVQHHKMMRLFINTVDILSQIE-- 1107 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 Q N G++G++ ++ G E+E+ L Y +S +A ++ + G+ V Sbjct: 1108 ----QNLNSGGNGEVGIVLIQENGSREVEVLLPKRYKVSLNVARAIKTLHGVLDV 1158 >gi|91977328|ref|YP_569987.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisB5] gi|91683784|gb|ABE40086.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisB5] Length = 1151 Score = 40.4 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 4/90 (4%) Query: 89 RLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIF-LRSQG 147 R+L E L+ + + LR++L+D PL I K + +T+ G I L+ L Q Sbjct: 1062 RVLHAEPLDAAAAKTQKGLRIFLRDTKPLDSISKRLQPPETKV--AGGNIALVLRLDPQT 1119 Query: 148 KIEIEITLDHYPISPEIAFDLEHITGITKV 177 ++E EI + +SP+IA ++ + G+ V Sbjct: 1120 EVEFEIP-GRFQVSPQIAGAIKAVIGVEHV 1148 >gi|254469239|ref|ZP_05082644.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio sp. JE062] gi|211961074|gb|EEA96269.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio sp. JE062] Length = 1144 Score = 39.7 bits (91), Expect = 0.18, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 14/119 (11%) Query: 63 RLLREKKPYIIVVSQEDKLSLQRD---SIRLLWVESLEKKSMEMLDSLRVYLQDRSPLRE 119 R L E ++++ Q D RD S+R+ VE LEK + + +LR++L P+ Sbjct: 1033 RDLLEPGASVVLLVQAD----MRDEEVSVRISQVEPLEKVAGRVHRTLRIFLGSDEPIAS 1088 Query: 120 IHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 + + G++ + L G+ E+E+ L +Y +SP+++ L+ + G+ V Sbjct: 1089 LQRQLRR------GGDGEVSCVVLLDDGQREVEVKLPGNYQLSPQLSGALKTLPGVMDV 1141 >gi|316933919|ref|YP_004108901.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris DX-1] gi|315601633|gb|ADU44168.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris DX-1] Length = 1151 Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 4/90 (4%) Query: 89 RLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIF-LRSQG 147 R+L E L+ + + LR++L+D PL + K + +++ G + L+ L Q Sbjct: 1062 RVLHAEPLDAAAAKTQKGLRIFLRDTKPLESLTKRLQPPESRA--AGGNVALVLRLDPQT 1119 Query: 148 KIEIEITLDHYPISPEIAFDLEHITGITKV 177 ++E EI + +SP+IA ++ ++G+ V Sbjct: 1120 EVEFEIP-GRFQVSPQIAGAIKAVSGVEHV 1148 >gi|323136417|ref|ZP_08071499.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242] gi|322398491|gb|EFY01011.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242] Length = 1153 Score = 39.3 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 7/90 (7%) Query: 89 RLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGK 148 R++ VE L + LR+ ++D+SPL I +N+ T +G++ L+ R Sbjct: 1067 RIVAVEPLANAAARAQKGLRIVVRDQSPLDRI----KNKLTGK--GEGEVSLLIKRDVAP 1120 Query: 149 IEIEITL-DHYPISPEIAFDLEHITGITKV 177 EIEI L YP++ ++A L I G+ V Sbjct: 1121 EEIEIRLPGSYPVNAQVASALRAIPGVVDV 1150 >gi|86749719|ref|YP_486215.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris HaA2] gi|86572747|gb|ABD07304.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris HaA2] Length = 1151 Score = 39.3 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 4/90 (4%) Query: 89 RLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGK 148 R+L E L+ + + LR++L+D PL I K + +++ G I L+ LR Sbjct: 1062 RVLHAEPLDAAAAKTQKGLRIFLRDTKPLDSITKRLQPPESKV--SGGNIALV-LRLDPH 1118 Query: 149 IEIEITL-DHYPISPEIAFDLEHITGITKV 177 E+E L + +SP+IA ++ +TG+ V Sbjct: 1119 TEVEFELPGRFQVSPQIAGAIKAVTGVELV 1148 >gi|254560015|ref|YP_003067110.1| DNA polymerase III subunit alpha [Methylobacterium extorquens DM4] gi|254267293|emb|CAX23125.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens DM4] Length = 1173 Score = 38.9 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L +P ++ + + L + R+ E L++ + +R++L+D L + + Sbjct: 1064 ILEPGRPLVLTI--QANLEGEDVRARITTAEPLDQAAARHQKGMRIFLRDDRALSSVQQR 1121 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 R +G++ LI + G+ E+E+ L D Y +P++A L + G+ +V Sbjct: 1122 LTLR------GEGEVSLILILDGGEREVEVRLKDRYQATPQVAGALRAVPGVVQV 1170 >gi|188580262|ref|YP_001923707.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001] gi|179343760|gb|ACB79172.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001] Length = 1173 Score = 38.9 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L +P ++ + + L + R+ E L++ + +R++L+D L + + Sbjct: 1064 ILEPGRPLVLTI--QANLEGEDVRARITTAEPLDQAAARHQKGMRIFLRDDRALSSVQQR 1121 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 R +G++ LI + G+ E+E+ L D Y +P++A L + G+ +V Sbjct: 1122 LTLR------GEGEVSLILILDGGEREVEVRLKDRYQATPQVAGALRAVPGVVQV 1170 >gi|163850481|ref|YP_001638524.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1] gi|240137543|ref|YP_002962014.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1] gi|163662086|gb|ABY29453.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1] gi|240007511|gb|ACS38737.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1] Length = 1173 Score = 38.9 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L +P ++ + + L + R+ E L++ + +R++L+D L + + Sbjct: 1064 ILEPGRPLVLTI--QANLEGEDVRARITTAEPLDQAAARHQKGMRIFLRDDRALSSVQQR 1121 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 R +G++ LI + G+ E+E+ L D Y +P++A L + G+ +V Sbjct: 1122 LTLR------GEGEVSLILILDGGEREVEVRLKDRYQATPQVAGALRAVPGVVQV 1170 >gi|218529177|ref|YP_002419993.1| DNA polymerase III subunit alpha [Methylobacterium chloromethanicum CM4] gi|218521480|gb|ACK82065.1| DNA polymerase III, alpha subunit [Methylobacterium chloromethanicum CM4] Length = 1173 Score = 38.9 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L +P ++ + + L + R+ E L++ + +R++L+D L + + Sbjct: 1064 ILEPGRPLVLTI--QANLEGEDVRARITTAEPLDQAAARHQKGMRIFLRDDRALSSVQQR 1121 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 R +G++ LI + G+ E+E+ L D Y +P++A L + G+ +V Sbjct: 1122 LTLR------GEGEVSLILILDGGEREVEVRLKDRYQATPQVAGALRAVPGVVQV 1170 >gi|299135003|ref|ZP_07028194.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2] gi|298589980|gb|EFI50184.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2] Length = 1135 Score = 38.1 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 3/88 (3%) Query: 93 VESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIE 152 VE L++ + + +L+++L+D P+ I + E+ + G G + + +E E Sbjct: 1045 VELLDQAAAKTPMALKIFLRDGKPVESIRRRLEDHAQGAAARSGSAGEVTVVMMLDLETE 1104 Query: 153 ITLD---HYPISPEIAFDLEHITGITKV 177 + + + +SP+IA L+ ITG+ V Sbjct: 1105 VDMKLPGRFKVSPQIAGALKAITGVVDV 1132 >gi|298291824|ref|YP_003693763.1| DNA polymerase III subunit alpha [Starkeya novella DSM 506] gi|296928335|gb|ADH89144.1| DNA polymerase III, alpha subunit [Starkeya novella DSM 506] Length = 1149 Score = 37.7 bits (86), Expect = 0.63, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 10/118 (8%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIR--LLWVESLEKKSMEMLDSLRVYLQDRSPLREIH 121 LL K ++ VS E +Q + +R + E L++ + +M +R++L+ PL + Sbjct: 1035 LLEPGKALLLQVSAE----MQGEDVRARIQTAEPLDEAASKMQKGMRIFLRSPDPLDSVA 1090 Query: 122 KYFENRQTQNYDKQGKIGLIFLRSQ-GKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 + D G++ L+ L + G E+E+ L Y +SP+IA L+ + G+ +V Sbjct: 1091 SRLGSLAGGRGD--GEVALVLLLGESGATEVELKLPGRYSLSPQIAGALKAVPGVVQV 1146 >gi|319898845|ref|YP_004158938.1| DNA polymerase III alpha subunit [Bartonella clarridgeiae 73] gi|319402809|emb|CBI76360.1| DNA polymerase III alpha subunit [Bartonella clarridgeiae 73] Length = 1162 Score = 37.4 bits (85), Expect = 0.85, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +II V ED+ + S+R+ +ESLE++++ +R++++ L +I Sbjct: 1053 MLESGKSFIITVIAEDRS--EGISLRIETIESLEEQALRHHKMMRLFIKTTDMLPQI--- 1107 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 +Q + G++ LI ++ G E+EI L Y + + ++ + GI V Sbjct: 1108 ---KQNLDSKGNGEVALILIQEDGLREVEIALPKKYKVDSRVVNAMKALPGIVDV 1159 >gi|319783852|ref|YP_004143328.1| DNA polymerase III subunit alpha [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169740|gb|ADV13278.1| DNA polymerase III, alpha subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 1175 Score = 37.4 bits (85), Expect = 1.00, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 65/115 (56%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL + +I V+ ED+ + ++R+ V+SLE ++ + +LR+++++ +P+ + Sbjct: 1066 LLEAGRSVVITVAAEDRP--EGVNLRINSVQSLEDEASRIQKALRIFVRNATPINTLAGQ 1123 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 R +G++ + ++ +G+ EIEI L + Y ISP+IA + + G+ +V Sbjct: 1124 LTVR------GEGQVSFVLIKEEGEGEIEIELPNRYRISPQIASAMRAVPGVVEV 1172 >gi|192291642|ref|YP_001992247.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris TIE-1] gi|192285391|gb|ACF01772.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris TIE-1] Length = 1151 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 4/90 (4%) Query: 89 RLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIF-LRSQG 147 R+L E L+ + + LR++L+D L + K + +T+ G I L+ L Q Sbjct: 1062 RVLHAEPLDAAAAKTQKGLRIFLRDTKFLDSVVKRLQPPETKV--AGGNIALVLRLDPQT 1119 Query: 148 KIEIEITLDHYPISPEIAFDLEHITGITKV 177 ++E +I Y +SP+IA ++ +TG+ V Sbjct: 1120 EVEFDIP-GRYHVSPQIAGAIKAVTGVEHV 1148 >gi|39935989|ref|NP_948265.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris CGA009] gi|39649843|emb|CAE28365.1| DNA polymerase III alpha subunit [Rhodopseudomonas palustris CGA009] Length = 1151 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 4/90 (4%) Query: 89 RLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIF-LRSQG 147 R+L E L+ + + LR++L+D L + K + +T+ G I L+ L Q Sbjct: 1062 RVLHAEPLDAAAAKTQKGLRIFLRDTKFLDSVVKRLQPPETKV--AGGNIALVLRLDPQT 1119 Query: 148 KIEIEITLDHYPISPEIAFDLEHITGITKV 177 ++E +I Y +SP+IA ++ +TG+ V Sbjct: 1120 EVEFDIP-GRYHVSPQIAGAIKAVTGVEHV 1148 >gi|182678571|ref|YP_001832717.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182634454|gb|ACB95228.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 1159 Score = 35.8 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 7/89 (7%) Query: 89 RLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGK 148 R+L VE L++ + + LRV++++ L + + R G+I LI + + G+ Sbjct: 1075 RILSVEPLDQAASRIQKGLRVFVRNEDSLASVAQKLTTR------GDGEISLILMTNGGE 1128 Query: 149 IEIEITLDHYPISPEIAFDLEHITGITKV 177 +E+ + + +S ++A L+ I GI V Sbjct: 1129 VEVRLP-GTFNVSAQLAGSLKTIPGIVAV 1156 >gi|262401560|ref|ZP_06078127.1| GTP-binding protein HflX [Vibrio sp. RC586] gi|262352275|gb|EEZ01404.1| GTP-binding protein HflX [Vibrio sp. RC586] Length = 429 Score = 35.4 bits (80), Expect = 3.5, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 11/118 (9%) Query: 34 AIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSIR 89 A+E LQE A E P L + + LEE+ PR+ R E P I+ +S ++Q I Sbjct: 297 AVETVLQEIDAHEVPTLLVMNKIDNLEEQTPRIERDDEGVPKIVWIS-----AMQGTGIE 351 Query: 90 LLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146 LL+ E+ + ++++ +LR+ + + +R Q + YD +G + LI +R Q Sbjct: 352 LLFEALSERLASQVVEHNLRIPPRHQGRIRSTFFQMNCIQQEEYDPEGNL-LITVRMQ 408 >gi|124009979|ref|ZP_01694643.1| histidine kinase family [Microscilla marina ATCC 23134] gi|123984001|gb|EAY24384.1| histidine kinase family [Microscilla marina ATCC 23134] Length = 580 Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 5/95 (5%) Query: 65 LREKKPYIIVVSQEDKLSLQRDSIRL----LWVESLEKKSMEMLDSLRVYLQDRSPLREI 120 L E+ +I VS + + LQR+ + L L V SL K+ L ++ V D P I Sbjct: 423 LAEELEILIDVSSKKLIPLQRE-VELCESYLEVMSLRKEVNYTLYTVGVKPDDLIPPALI 481 Query: 121 HKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL 155 H EN T N+DK GK+ +Q + + TL Sbjct: 482 HTAIENGITHNHDKDGKMAFYLSFAQNRYQRHYTL 516 >gi|163802746|ref|ZP_02196636.1| GTP-binding protein HflX [Vibrio sp. AND4] gi|159173453|gb|EDP58275.1| GTP-binding protein HflX [Vibrio sp. AND4] Length = 429 Score = 34.7 bits (78), Expect = 5.8, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 9/109 (8%) Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK 98 +A+E P + + + LEE+KPR+ R E P + VS D L I LL+ E+ Sbjct: 306 DADEVPTLVVMNKIDNLEEQKPRIERDEEGVPRAVWVSAMDGL-----GIELLFDALTER 360 Query: 99 KSMEMLD-SLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146 + +M++ LR+ Q + LR + Q + YD++G + LI +R Q Sbjct: 361 LASQMVEYQLRIPPQYQGRLRSTFFDMKCIQREEYDQEGDL-LIDIRMQ 408 >gi|258623500|ref|ZP_05718502.1| GTP-binding protein HflX [Vibrio mimicus VM573] gi|262163593|ref|ZP_06031336.1| GTP-binding protein HflX [Vibrio mimicus VM223] gi|262172554|ref|ZP_06040232.1| GTP-binding protein HflX [Vibrio mimicus MB-451] gi|258584212|gb|EEW08959.1| GTP-binding protein HflX [Vibrio mimicus VM573] gi|261893630|gb|EEY39616.1| GTP-binding protein HflX [Vibrio mimicus MB-451] gi|262027960|gb|EEY46622.1| GTP-binding protein HflX [Vibrio mimicus VM223] Length = 429 Score = 34.7 bits (78), Expect = 5.9, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 11/118 (9%) Query: 34 AIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSIR 89 A+E LQE A E P L + + LEE+ PR+ R E P ++ +S ++Q I Sbjct: 297 AVETVLQEIDAHEVPTLLVMNKIDSLEEQAPRIERDDEGIPRVVWIS-----AMQGSGIE 351 Query: 90 LLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146 LL+ E+ + ++++ LR+ + + +R + Q + YD +G + LI +R Q Sbjct: 352 LLFQALSERLASQVVEHHLRIPPRHQGRIRSTFFQMKCIQQEEYDPEGNL-LITVRMQ 408 >gi|311252631|ref|XP_003125192.1| PREDICTED: LOW QUALITY PROTEIN: spectrin beta chain, brain 1-like [Sus scrofa] Length = 2364 Score = 34.7 bits (78), Expect = 6.0, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 16/123 (13%) Query: 13 KGKKKPDGNHDFLFLEDCYD-----HAIEMKLQEAEEDPNFLS----LQEQQQLE---EE 60 K ++ D N LF + C D H +E ++Q + + S L++QQ LE E Sbjct: 1372 KAQRLFDANKAELFTQSCADLDKWLHGLESQIQSDDYGKDLTSVNILLKKQQMLENQMEV 1431 Query: 61 KPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREI 120 + + + E + +SQE K + + DS RL +++ K ME+L+ L Q+ +EI Sbjct: 1432 RKKEIEELQSQAQALSQEGKSTDEVDSKRL----TVQTKFMELLEPLNERKQNLLASKEI 1487 Query: 121 HKY 123 H++ Sbjct: 1488 HQF 1490 >gi|126331403|ref|XP_001373688.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 1645 Score = 34.7 bits (78), Expect = 6.1, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 6/80 (7%) Query: 57 LEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDS------LRVY 110 L E L+E PY ++VS E S Q D + + + +L+KK +L S LR++ Sbjct: 202 LSPEWEIFLKESYPYFLIVSDEGITSRQTDYLNIFILHALQKKINVVLASGQETNMLRIF 261 Query: 111 LQDRSPLREIHKYFENRQTQ 130 PL K+FE + + Sbjct: 262 GYQVQPLYSHWKFFEQHKNE 281 >gi|300795972|ref|NP_001179205.1| spectrin beta chain, brain 1 [Bos taurus] gi|297480310|ref|XP_002691372.1| PREDICTED: spectrin, beta, non-erythrocytic 1 [Bos taurus] gi|296482673|gb|DAA24788.1| spectrin, beta, non-erythrocytic 1 [Bos taurus] Length = 2363 Score = 34.7 bits (78), Expect = 6.3, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 16/123 (13%) Query: 13 KGKKKPDGNHDFLFLEDCYD-----HAIEMKLQEAEEDPNFLS----LQEQQQLE---EE 60 K ++ D N LF + C D H +E ++Q + + S L++QQ LE E Sbjct: 1372 KAQRLFDANKAELFTQSCADLDKWLHGLESQIQSDDYGKDLTSVNILLKKQQMLENQMEV 1431 Query: 61 KPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREI 120 + + + E + +SQE K + + DS RL +++ K ME+L+ L Q+ +EI Sbjct: 1432 RKKEIEELQSQAQALSQEGKSTDEVDSKRL----TVQTKFMELLEPLNERKQNLLASKEI 1487 Query: 121 HKY 123 H++ Sbjct: 1488 HQF 1490 >gi|304391642|ref|ZP_07373584.1| DNA polymerase III subunit alpha [Ahrensia sp. R2A130] gi|303295871|gb|EFL90229.1| DNA polymerase III subunit alpha [Ahrensia sp. R2A130] Length = 1166 Score = 34.7 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 13/119 (10%) Query: 59 EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLR 118 E LL+ + I+ V ED+ + S+R++ + +E ++ L ++L+D SPL Sbjct: 1052 EAASELLQAGRSLILNVVGEDRP--EGVSLRVMMIRGIEDEAARTQYLLNIFLRDASPLP 1109 Query: 119 EIHKYFENRQTQNYDKQGK--IGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGI 174 I KQG+ + L+ + G E+E+ L +SP+IA L+ I G+ Sbjct: 1110 SI--------ASQLGKQGEGIVKLVVIDFDGGREVEVELPGKRLVSPQIANALKAIDGV 1160 >gi|75676051|ref|YP_318472.1| DNA polymerase III subunit alpha [Nitrobacter winogradskyi Nb-255] gi|74420921|gb|ABA05120.1| DNA polymerase III, alpha subunit [Nitrobacter winogradskyi Nb-255] Length = 1168 Score = 34.7 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 15/102 (14%) Query: 89 RLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQG- 147 R+ E L+ + + LR++L+D PL I K + N D G + R G Sbjct: 1066 RVSRAEPLDDAAAKTQKGLRIFLRDSRPLESIEKRLQ--ANDNGDPAGAAKVPASRQAGE 1123 Query: 148 -----------KIEIEITL-DHYPISPEIAFDLEHITGITKV 177 + E+EI L + +SP+IA ++ +TG+ V Sbjct: 1124 GEVSLVMMLDLETEVEIKLPGRFRVSPQIAGAIKAVTGVVDV 1165 >gi|258625634|ref|ZP_05720515.1| GTP-binding protein HflX [Vibrio mimicus VM603] gi|258582089|gb|EEW06957.1| GTP-binding protein HflX [Vibrio mimicus VM603] Length = 429 Score = 34.3 bits (77), Expect = 7.3, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 11/118 (9%) Query: 34 AIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSIR 89 A+E LQE A E P L + + LEE+ PR+ R E P ++ +S ++Q I Sbjct: 297 AVETVLQEIDAHEVPTLLVMNKIDSLEEQAPRIERDDEGIPRVVWIS-----AMQGSGIE 351 Query: 90 LLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146 LL+ E+ + ++++ LR+ + + +R + Q + YD +G + LI +R Q Sbjct: 352 LLFQTLSERLASQVVEHHLRIPPRHQGRIRSTFFQMKCIQQEEYDPEGNL-LITVRMQ 408 >gi|229519943|ref|ZP_04409374.1| GTP-binding protein HflX [Vibrio cholerae TM 11079-80] gi|229343071|gb|EEO08058.1| GTP-binding protein HflX [Vibrio cholerae TM 11079-80] Length = 429 Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 11/118 (9%) Query: 34 AIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSIR 89 A+E LQE A E P L + + LEE+ PR+ R E P ++ +S ++Q I Sbjct: 297 AVETVLQEIDAHEVPTLLVMNKIDNLEEQSPRIERDDEGVPRVVWIS-----AMQGAGIE 351 Query: 90 LLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146 LL+ E+ + ++++ LR+ + + +R Q + YD +G + LI +R Q Sbjct: 352 LLFEALSERLASQVVEHHLRIPPRHQGRIRSTFFQMNCIQQEEYDPEGNL-LITVRMQ 408 >gi|254292140|ref|ZP_04962912.1| GTP-binding protein HflX [Vibrio cholerae AM-19226] gi|150421939|gb|EDN13914.1| GTP-binding protein HflX [Vibrio cholerae AM-19226] Length = 429 Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 11/118 (9%) Query: 34 AIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSIR 89 A+E LQE A E P L + + LEE+ PR+ R E P ++ +S ++Q I Sbjct: 297 AVETVLQEIDAHEVPTLLVMNKIDNLEEQSPRIERDDEGVPRVVWIS-----AMQGAGIE 351 Query: 90 LLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146 LL+ E+ + ++++ LR+ + + +R Q + YD +G + LI +R Q Sbjct: 352 LLFEALSERLASQVVEHHLRIPPRHQGRIRSTFFQMNCIQQEEYDPEGNL-LITVRMQ 408 >gi|153217190|ref|ZP_01950954.1| GTP-binding protein HflX [Vibrio cholerae 1587] gi|153803483|ref|ZP_01958069.1| GTP-binding protein HflX [Vibrio cholerae MZO-3] gi|153827316|ref|ZP_01979983.1| GTP-binding protein HflX [Vibrio cholerae MZO-2] gi|153830894|ref|ZP_01983561.1| GTP-binding protein HflX [Vibrio cholerae 623-39] gi|229512374|ref|ZP_04401849.1| GTP-binding protein HflX [Vibrio cholerae TMA 21] gi|229526912|ref|ZP_04416315.1| GTP-binding protein HflX [Vibrio cholerae bv. albensis VL426] gi|297582276|ref|ZP_06944190.1| GTP-binding protein HflX [Vibrio cholerae RC385] gi|124113773|gb|EAY32593.1| GTP-binding protein HflX [Vibrio cholerae 1587] gi|124120984|gb|EAY39727.1| GTP-binding protein HflX [Vibrio cholerae MZO-3] gi|148873628|gb|EDL71763.1| GTP-binding protein HflX [Vibrio cholerae 623-39] gi|149738782|gb|EDM53124.1| GTP-binding protein HflX [Vibrio cholerae MZO-2] gi|229336081|gb|EEO01100.1| GTP-binding protein HflX [Vibrio cholerae bv. albensis VL426] gi|229350589|gb|EEO15534.1| GTP-binding protein HflX [Vibrio cholerae TMA 21] gi|297533495|gb|EFH72342.1| GTP-binding protein HflX [Vibrio cholerae RC385] gi|327483210|gb|AEA77617.1| GTP-binding protein HflX [Vibrio cholerae LMA3894-4] Length = 429 Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 11/118 (9%) Query: 34 AIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSIR 89 A+E LQE A E P L + + LEE+ PR+ R E P ++ +S ++Q I Sbjct: 297 AVETVLQEIDAHEVPTLLVMNKIDNLEEQSPRIERDDEGVPRVVWIS-----AMQGAGIE 351 Query: 90 LLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146 LL+ E+ + ++++ LR+ + + +R Q + YD +G + LI +R Q Sbjct: 352 LLFEALSERLASQVVEHHLRIPPRHQGRIRSTFFQMNCIQQEEYDPEGNL-LITVRMQ 408 Searching..................................................done Results from round 2 >gi|315122785|ref|YP_004063274.1| DNA polymerase III subunit alpha [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496187|gb|ADR52786.1| DNA polymerase III subunit alpha [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 1226 Score = 270 bits (690), Expect = 7e-71, Method: Composition-based stats. Identities = 124/181 (68%), Positives = 150/181 (82%) Query: 4 IFFPKNNNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPR 63 IFFP N+ KK + N DFL LEDCYDH+IE KLQEAEEDPNFLS+QEQ++LE++KP Sbjct: 1045 IFFPNYNSSNRKKTSNKNRDFLTLEDCYDHSIERKLQEAEEDPNFLSVQEQRKLEKKKPY 1104 Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LLREK PYII VSQED +S++RDS+RLL V+SL+ KSMEML SL++YLQD SPL EIHKY Sbjct: 1105 LLREKNPYIIFVSQEDMVSVKRDSVRLLLVQSLKNKSMEMLVSLKIYLQDHSPLTEIHKY 1164 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKVVQVIHN 183 F+NRQ Q++DK GKI L+F+R Q +IE+EITLD YPIS EI+FDLEHI GI KVV +I + Sbjct: 1165 FQNRQVQHHDKHGKIDLVFVRLQEEIELEITLDQYPISLEISFDLEHIAGIMKVVPIIRD 1224 Query: 184 E 184 E Sbjct: 1225 E 1225 >gi|15965042|ref|NP_385395.1| DNA polymerase III subunit alpha [Sinorhizobium meliloti 1021] gi|307301114|ref|ZP_07580883.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C] gi|15074221|emb|CAC45868.1| Probable DNA polymerase III, alpha chain [Sinorhizobium meliloti 1021] gi|306904069|gb|EFN34655.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C] Length = 1169 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K ++ V E++ + +R+ + SLE++S++M +LRVY++D PLR I + Sbjct: 1060 LLEPGKSLVMTVDAEERP--EGIGLRIRTLRSLEEESLQMQKALRVYVRDCGPLRSIASH 1117 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 N G + I ++ G+ EIE+ L + Y ISPEIA L G+ V Sbjct: 1118 L------NAKGDGLVSFIVIKDNGQREIEVELNEKYRISPEIAAALRSAPGVVDV 1166 >gi|307317847|ref|ZP_07597285.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83] gi|306896609|gb|EFN27357.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83] Length = 1169 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K ++ V E++ + +R+ + SLE++S++M +LRVY++D PLR I + Sbjct: 1060 LLEPGKSLVMTVDAEERP--EGIGLRIRTLRSLEEESLQMQKALRVYVRDCGPLRSIASH 1117 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 N G + I ++ G+ EIE+ L + Y ISPEIA L G+ V Sbjct: 1118 L------NAKGDGLVSFIVIKDNGQREIEVELNEKYRISPEIAAALRSAPGVVDV 1166 >gi|241204110|ref|YP_002975206.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858000|gb|ACS55667.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1165 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +++ + E++ + +R+ ++SLE+KS++M +LRVY++D PLR + + Sbjct: 1056 VLESGKSFVLTATGEERP--EGIGLRIQTIQSLEEKSLQMQKALRVYVRDSGPLRMVAGH 1113 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 N G + I ++ GK E+E+ L + Y I+PEIA L G+ V Sbjct: 1114 L------NAKGDGLVSFIVIKEDGKREVEVALSEKYRITPEIAAALRAAPGVVDV 1162 >gi|116251489|ref|YP_767327.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv. viciae 3841] gi|115256137|emb|CAK07218.1| putative DNA polymerase III alpha subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 1165 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +++ + E++ + +R+ ++SLE+KS++M +LRVY++D PLR + + Sbjct: 1056 VLESGKSFVLTATGEERP--EGIGLRIQTIQSLEEKSLQMQKALRVYVRDSGPLRMVAGH 1113 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 N G + I ++ GK E+E+ L + Y I+PEIA L G+ V Sbjct: 1114 L------NAKGDGLVSFIVIKEDGKREVEVALSEKYRITPEIAAALRAAPGVVDV 1162 >gi|209548886|ref|YP_002280803.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534642|gb|ACI54577.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 1165 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +++ + E++ + +R+ ++SLE+KS++M +LRVY++D PL+ + + Sbjct: 1056 VLESGKSFVLTATGEERP--EGIGLRVQTIQSLEEKSLQMQKALRVYVRDSGPLKMVAGH 1113 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 R G + I ++ +GK E+E+ L + Y I+PEIA L G+ V Sbjct: 1114 LNAR------GDGLVSFIVIKEEGKREVEVALAEKYRITPEIAAALRAAPGVVDV 1162 >gi|327194832|gb|EGE61666.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CNPAF512] Length = 1165 Score = 154 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +++ + E++ + +R+ ++SLE+KS++M +LRVY++D PL+ + + Sbjct: 1056 MLESGKSFLLTATGEERP--EGIGLRIQTIQSLEEKSLQMQKALRVYVRDSGPLKMVAGH 1113 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 N G + I ++ +GK E+E+ L + Y I+PEIA L G+ V Sbjct: 1114 L------NAKGDGLVSFIVIKEEGKREVEVALPEKYRITPEIAAALRAAPGVVDV 1162 >gi|190891309|ref|YP_001977851.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652] gi|190696588|gb|ACE90673.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652] Length = 1165 Score = 154 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +++ + E++ + +R+ ++SLE+KS++M +LRVY++D PL+ + + Sbjct: 1056 MLESGKSFLLTATGEERP--EGIGLRIQTIQSLEEKSLQMQKALRVYIRDSGPLKMVAGH 1113 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 N G + I ++ +GK E+E+ L + Y I+PEIA L G+ V Sbjct: 1114 L------NAKGDGLVSFIVIKEEGKREVEVALPEKYRITPEIAAALRAAPGVVDV 1162 >gi|150396144|ref|YP_001326611.1| DNA polymerase III subunit alpha [Sinorhizobium medicae WSM419] gi|150027659|gb|ABR59776.1| DNA polymerase III, alpha subunit [Sinorhizobium medicae WSM419] Length = 1165 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K ++ V E++ + +R+ + SLE++S++M +LRVY++D PLR I + Sbjct: 1056 LLEAGKSLVMTVDAEERP--EGIGLRIRTLRSLEEESLQMQKALRVYVRDCGPLRSIASH 1113 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 R G + I ++ G+ EIE+ L + Y ISPEIA L G+ V Sbjct: 1114 LNAR------GDGLVSFIVIKDNGQREIEVELSEKYRISPEIAAALRSAPGVVDV 1162 >gi|227821642|ref|YP_002825612.1| DNA polymerase III subunit alpha [Sinorhizobium fredii NGR234] gi|227340641|gb|ACP24859.1| DNA polymerase III, alpha subunit [Sinorhizobium fredii NGR234] Length = 1165 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K ++ V E++ + +R+ + SLE++S++M +LRVY++D PLR I + Sbjct: 1056 LLEAGKSLVMTVDAEERP--EGIGLRIRTLRSLEEESLQMQKALRVYVRDSGPLRSIASH 1113 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 N G + I ++ G+ EIE+ L + Y ISPEIA L G+ V Sbjct: 1114 L------NAKGDGLVSFIVIKDNGQREIEVELSEKYRISPEIAAALRSAPGVVDV 1162 >gi|325292654|ref|YP_004278518.1| DNA polymerase III subunit alpha [Agrobacterium sp. H13-3] gi|325060507|gb|ADY64198.1| DNA polymerase III alpha subunit [Agrobacterium sp. H13-3] Length = 1166 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ +SLE+KS++M +LRVY++D PL+ + ++ Sbjct: 1057 LLEVGKSLVITVQAEERP--EGIGLRIQTAQSLEEKSVQMQKALRVYVRDSGPLKTVARH 1114 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 N G + I ++ +G EIE+ L + Y ISPEIA L G+ V Sbjct: 1115 L------NTKGDGSVYFIVIKDEGSREIEVELTEKYRISPEIAAALRSAPGVVDV 1163 >gi|222148298|ref|YP_002549255.1| DNA polymerase III subunit alpha [Agrobacterium vitis S4] gi|221735286|gb|ACM36249.1| DNA polymerase III alpha chain [Agrobacterium vitis S4] Length = 1179 Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V+ E++ + +R+ +SLE+KS++M +LRVYL+D SPLR + + Sbjct: 1070 LLESGKSLVITVAAEERP--EGIGLRIQTAQSLEEKSLQMQKTLRVYLRDSSPLRALAAH 1127 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 N G + + ++ G+ EIE+ L+ + I+PEIA + G+ V Sbjct: 1128 L------NTKGDGLVSFVVIKEDGRREIEVELNQRFRITPEIAAAMRSAPGVVDV 1176 >gi|15888619|ref|NP_354300.1| DNA polymerase III subunit alpha [Agrobacterium tumefaciens str. C58] gi|15156343|gb|AAK87085.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58] Length = 1167 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ +SLE+KS++M +LRVY++D PL+ + ++ Sbjct: 1058 LLEVGKSLVINVQAEERP--EGIGLRIQTAQSLEEKSVQMQKALRVYVRDSGPLKTVARH 1115 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 N G + I ++ +G EIE+ L + Y ISPEIA L G+ V Sbjct: 1116 L------NTKGDGSVYFIVIKDEGSREIEVELTEKYRISPEIAAALRSAPGVVDV 1164 >gi|153009730|ref|YP_001370945.1| DNA polymerase III subunit alpha [Ochrobactrum anthropi ATCC 49188] gi|151561618|gb|ABS15116.1| DNA polymerase III, alpha subunit [Ochrobactrum anthropi ATCC 49188] Length = 1163 Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M +LR+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKALRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVDV 1160 >gi|222085600|ref|YP_002544130.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter K84] gi|221723048|gb|ACM26204.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter K84] Length = 1187 Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +++ +++ + S+RL +SLE+KS++M +LRVY++D PL+ + + Sbjct: 1078 VLEVGKSFVVTAQADERP--EGISLRLQTAQSLEEKSLQMQKALRVYVRDSGPLKAVAAH 1135 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 N G + I ++ +GK E+E+ L + Y I+PEIA L G+ V Sbjct: 1136 L------NAKGDGLVSFIVIKEEGKREVEVVLAEKYRITPEIAAALRTAPGVIDV 1184 >gi|306841939|ref|ZP_07474617.1| DNA polymerase III, alpha subunit [Brucella sp. BO2] gi|306287972|gb|EFM59380.1| DNA polymerase III, alpha subunit [Brucella sp. BO2] Length = 1163 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|148559880|ref|YP_001258802.1| DNA polymerase III subunit alpha [Brucella ovis ATCC 25840] gi|148371137|gb|ABQ61116.1| DNA polymerase III, alpha subunit [Brucella ovis ATCC 25840] Length = 1163 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|17987420|ref|NP_540054.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M] gi|17983111|gb|AAL52318.1| DNA polymerase iii, alpha chain [Brucella melitensis bv. 1 str. 16M] Length = 1178 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1069 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1126 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V Sbjct: 1127 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1175 >gi|256369256|ref|YP_003106764.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915] gi|255999416|gb|ACU47815.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915] Length = 1163 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|306843761|ref|ZP_07476360.1| DNA polymerase III, alpha subunit [Brucella sp. BO1] gi|306275952|gb|EFM57665.1| DNA polymerase III, alpha subunit [Brucella sp. BO1] Length = 1163 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|254718932|ref|ZP_05180743.1| DNA polymerase III subunit alpha [Brucella sp. 83/13] gi|265983919|ref|ZP_06096654.1| DNA polymerase III subunit alpha [Brucella sp. 83/13] gi|306838837|ref|ZP_07471668.1| DNA polymerase III, alpha subunit [Brucella sp. NF 2653] gi|264662511|gb|EEZ32772.1| DNA polymerase III subunit alpha [Brucella sp. 83/13] gi|306406121|gb|EFM62369.1| DNA polymerase III, alpha subunit [Brucella sp. NF 2653] Length = 1163 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|254689079|ref|ZP_05152333.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870] gi|256257328|ref|ZP_05462864.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68] gi|260754577|ref|ZP_05866925.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870] gi|260883604|ref|ZP_05895218.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68] gi|297248177|ref|ZP_06931895.1| DNA polymerase III subunit alpha [Brucella abortus bv. 5 str. B3196] gi|260674685|gb|EEX61506.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870] gi|260873132|gb|EEX80201.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68] gi|297175346|gb|EFH34693.1| DNA polymerase III subunit alpha [Brucella abortus bv. 5 str. B3196] Length = 1163 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|225852339|ref|YP_002732572.1| DNA polymerase III subunit alpha [Brucella melitensis ATCC 23457] gi|256264162|ref|ZP_05466694.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 2 str. 63/9] gi|225640704|gb|ACO00618.1| DNA polymerase III, alpha subunit [Brucella melitensis ATCC 23457] gi|263094380|gb|EEZ18225.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 2 str. 63/9] Length = 1163 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|254693562|ref|ZP_05155390.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya] gi|261213827|ref|ZP_05928108.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya] gi|260915434|gb|EEX82295.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya] Length = 1163 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|161618789|ref|YP_001592676.1| DNA polymerase III subunit alpha [Brucella canis ATCC 23365] gi|254704138|ref|ZP_05165966.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686] gi|256044502|ref|ZP_05447406.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. Rev.1] gi|256060935|ref|ZP_05451093.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33] gi|256113358|ref|ZP_05454216.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str. Ether] gi|260563856|ref|ZP_05834342.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M] gi|260566613|ref|ZP_05837083.1| DNA polymerase III subunit alpha [Brucella suis bv. 4 str. 40] gi|261324935|ref|ZP_05964132.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33] gi|261754804|ref|ZP_05998513.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686] gi|265990926|ref|ZP_06103483.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. Rev.1] gi|265994764|ref|ZP_06107321.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str. Ether] gi|161335600|gb|ABX61905.1| DNA polymerase III, alpha subunit [Brucella canis ATCC 23365] gi|260153872|gb|EEW88964.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M] gi|260156131|gb|EEW91211.1| DNA polymerase III subunit alpha [Brucella suis bv. 4 str. 40] gi|261300915|gb|EEY04412.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33] gi|261744557|gb|EEY32483.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686] gi|262765877|gb|EEZ11666.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str. Ether] gi|263001710|gb|EEZ14285.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. Rev.1] gi|326408847|gb|ADZ65912.1| DNA polymerase III subunit alpha [Brucella melitensis M28] gi|326538562|gb|ADZ86777.1| DNA polymerase III, alpha subunit [Brucella melitensis M5-90] Length = 1163 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|23501712|ref|NP_697839.1| DNA polymerase III subunit alpha [Brucella suis 1330] gi|23347636|gb|AAN29754.1| DNA polymerase III, alpha subunit [Brucella suis 1330] Length = 1163 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|163843098|ref|YP_001627502.1| DNA polymerase III subunit alpha [Brucella suis ATCC 23445] gi|163673821|gb|ABY37932.1| DNA polymerase III, alpha subunit [Brucella suis ATCC 23445] Length = 1163 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|294852181|ref|ZP_06792854.1| DNA polymerase III subunit alpha [Brucella sp. NVSL 07-0026] gi|294820770|gb|EFG37769.1| DNA polymerase III subunit alpha [Brucella sp. NVSL 07-0026] Length = 1188 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1079 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1136 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V Sbjct: 1137 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1185 >gi|62289774|ref|YP_221567.1| DNA polymerase III subunit alpha [Brucella abortus bv. 1 str. 9-941] gi|82699702|ref|YP_414276.1| DNA polymerase III subunit alpha [Brucella melitensis biovar Abortus 2308] gi|189024017|ref|YP_001934785.1| DNA polymerase III subunit alpha [Brucella abortus S19] gi|254697213|ref|ZP_05159041.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str. 86/8/59] gi|254730110|ref|ZP_05188688.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292] gi|260545478|ref|ZP_05821219.1| DNA polymerase III subunit alpha subunit [Brucella abortus NCTC 8038] gi|260757800|ref|ZP_05870148.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292] gi|260761623|ref|ZP_05873966.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str. 86/8/59] gi|62195906|gb|AAX74206.1| DnaE-2, DNA polymerase III, alpha subunit [Brucella abortus bv. 1 str. 9-941] gi|82615803|emb|CAJ10801.1| Phosphoesterase PHP, N-terminal:PHP domain C-terminal region:OB-fold nucleic acid binding domain:DNA polymerase III alpha sub [Brucella melitensis biovar Abortus 2308] gi|189019589|gb|ACD72311.1| DNA polymerase III subunit alpha [Brucella abortus S19] gi|260096885|gb|EEW80760.1| DNA polymerase III subunit alpha subunit [Brucella abortus NCTC 8038] gi|260668118|gb|EEX55058.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292] gi|260672055|gb|EEX58876.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str. 86/8/59] Length = 1163 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|237815260|ref|ZP_04594258.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A] gi|237790097|gb|EEP64307.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A] Length = 1190 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1081 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1138 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V Sbjct: 1139 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1187 >gi|110633608|ref|YP_673816.1| DNA polymerase III subunit alpha [Mesorhizobium sp. BNC1] gi|110284592|gb|ABG62651.1| DNA polymerase III, alpha subunit [Chelativorans sp. BNC1] Length = 1172 Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 65/115 (56%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL + +I+VS ED+ + ++R+ V+SLE ++ M +LR+YL+D P+ I Sbjct: 1063 LLEPGRSVVIMVSAEDRP--EGINLRIQTVQSLEAEASCMQKALRIYLRDPQPIAAISSQ 1120 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 R +G++ LI ++ G+ EIEI L + Y ISP++A + ++G+ V Sbjct: 1121 LTTR------GEGQVSLIVIKDGGRGEIEIGLPERYRISPQVAAAMRAVSGVVDV 1169 >gi|163759322|ref|ZP_02166408.1| DNA polymerase III subunit alpha [Hoeflea phototrophica DFL-43] gi|162283726|gb|EDQ34011.1| DNA polymerase III subunit alpha [Hoeflea phototrophica DFL-43] Length = 1189 Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ ESLE ++ +LRV+++D P+ + + Sbjct: 1080 LLEPGKSIVITVLAEERP--EGVGLRIQTAESLEDRAARGQTALRVFVRDAKPINSVSTH 1137 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 + R +G++ I ++ G EIE+TL D Y ISP++A L+ G+ V Sbjct: 1138 LKAR------GEGQVSFIMIKDGGCREIEVTLADRYKISPQMAAALKAAPGVLDV 1186 >gi|254701591|ref|ZP_05163419.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513] gi|261752144|ref|ZP_05995853.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513] gi|261741897|gb|EEY29823.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513] Length = 1163 Score = 144 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMRKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|260168558|ref|ZP_05755369.1| DNA polymerase III subunit alpha [Brucella sp. F5/99] gi|261758031|ref|ZP_06001740.1| DNA polymerase III subunit alpha [Brucella sp. F5/99] gi|261738015|gb|EEY26011.1| DNA polymerase III subunit alpha [Brucella sp. F5/99] Length = 1163 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQHEVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|254713932|ref|ZP_05175743.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1] gi|254717010|ref|ZP_05178821.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1] gi|261218817|ref|ZP_05933098.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1] gi|261321684|ref|ZP_05960881.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1] gi|260923906|gb|EEX90474.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1] gi|261294374|gb|EEX97870.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1] Length = 1163 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQHEVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|254706961|ref|ZP_05168789.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10] gi|254709931|ref|ZP_05171742.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94] gi|256031424|ref|ZP_05445038.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1] gi|256159545|ref|ZP_05457313.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1] gi|256254832|ref|ZP_05460368.1| DNA polymerase III subunit alpha [Brucella ceti B1/94] gi|261222013|ref|ZP_05936294.1| DNA polymerase III subunit alpha [Brucella ceti B1/94] gi|261314424|ref|ZP_05953621.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10] gi|261317477|ref|ZP_05956674.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94] gi|265988513|ref|ZP_06101070.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1] gi|265997977|ref|ZP_06110534.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1] gi|260920597|gb|EEX87250.1| DNA polymerase III subunit alpha [Brucella ceti B1/94] gi|261296700|gb|EEY00197.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94] gi|261303450|gb|EEY06947.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10] gi|262552445|gb|EEZ08435.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1] gi|264660710|gb|EEZ30971.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1] Length = 1163 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQHEVEIELPHRYRVSPQIASAMKAIQGVVEV 1160 >gi|225627320|ref|ZP_03785357.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo] gi|225617325|gb|EEH14370.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo] Length = 1190 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K +I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I + Sbjct: 1081 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1138 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 F R G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V Sbjct: 1139 FNTR------GDGQVSLIVIKDNGQHEVEIELPHRYRVSPQIASAMKAIQGVVEV 1187 >gi|90419565|ref|ZP_01227475.1| DNA polymerase III alpha subunit [Aurantimonas manganoxydans SI85-9A1] gi|90336502|gb|EAS50243.1| DNA polymerase III alpha subunit [Aurantimonas manganoxydans SI85-9A1] Length = 1153 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 9/114 (7%) Query: 65 LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYF 124 L I+ VS E++ + S R+ V+SLE +++ M +LRV+++D +PL+ Sbjct: 1045 LEPGSSVIVGVSAEERP--EGVSFRVQSVQSLEDEAVRMQKALRVFMRDANPLQAF---- 1098 Query: 125 ENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 R D +I L+ +R G+ E+EITL Y +SP++A ++ G+ V Sbjct: 1099 --RSQLRADGDSEISLVLVRDGGEREVEITLPGRYRVSPQMASVVKAAPGVLDV 1150 >gi|114707392|ref|ZP_01440289.1| DNA polymerase III subunit alpha [Fulvimarina pelagi HTCC2506] gi|114537273|gb|EAU40400.1| DNA polymerase III subunit alpha [Fulvimarina pelagi HTCC2506] Length = 1151 Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 ++ I+ E++ + S R V+SLE +++ M +LR++L+D +P+ + Sbjct: 1042 VMEPGASVIVTAQAEERP--EGVSFRASNVQSLEDEAVRMQKALRIFLRDENPIDAFQSH 1099 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 + + ++ ++ LR G E+EI L D Y +SP+IA ++ G+ V Sbjct: 1100 LQP------NGDSEVSIVLLRDDGGREVEIMLADKYRVSPQIASAIKAAHGVVDV 1148 >gi|86357261|ref|YP_469153.1| DNA polymerase III subunit alpha [Rhizobium etli CFN 42] gi|86281363|gb|ABC90426.1| DNA polymerase III alpha subunit protein [Rhizobium etli CFN 42] Length = 1165 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +++ + E++ + +R+ ++SLE+KS++M +LRVY++D PL+ + + Sbjct: 1056 VLESGKSFLLTATGEERP--EGIGLRIQTIQSLEEKSLQMQKALRVYIRDSGPLKMVAGH 1113 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 N G + I ++ +GK E+E+ L + Y I+ EIA L G+ V Sbjct: 1114 L------NAKGDGLVSFIVIKEEGKREVEVALPEKYRITAEIAAALRAAPGVVDV 1162 >gi|158423315|ref|YP_001524607.1| DNA polymerase III subunit alpha [Azorhizobium caulinodans ORS 571] gi|158330204|dbj|BAF87689.1| DNA polymerase III alpha subunit [Azorhizobium caulinodans ORS 571] Length = 1144 Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 8/115 (6%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL P +++V+ E L + +R+ E L++ + +LR+++ PL I Sbjct: 1034 LLEPGTPVLMMVAAE--LQGEDVRVRIQSCERLDEATARHHKNLRIFVNSTEPLTGI--- 1088 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 +R+ G++ L+ L GK E+EI LD YP+SP+IA ++ I G+ V Sbjct: 1089 --SRRLSGGKGDGEVSLVLLMDGGKAEVEIRLDGRYPVSPQIAGAIKAIPGVVAV 1141 >gi|260463915|ref|ZP_05812111.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum WSM2075] gi|259030290|gb|EEW31570.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum WSM2075] Length = 1175 Score = 127 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 61/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL + +I V+ ED+ + ++R+ V+SLE ++ + +LR+++++ P I Sbjct: 1066 LLEAGRSVVITVAAEDRP--EGVNLRINSVQSLEDEASRIQKALRIFVRNDGPASMIQSQ 1123 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 R + ++ +I ++ + + E+EI L Y +SP+IA + + G+ +V Sbjct: 1124 LTQR------GESQVSIIVIKDEAQGEVEIALQGGYRVSPQIASAMRAVPGVVEV 1172 >gi|328543710|ref|YP_004303819.1| DNA polymerase III subunit alpha [Polymorphum gilvum SL003B-26A1] gi|326413454|gb|ADZ70517.1| DNA polymerase III subunit alpha [Polymorphum gilvum SL003B-26A1] Length = 1146 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 9/114 (7%) Query: 65 LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYF 124 L + +I+VS + + S+R+ V+ +E + + SLRV+L+D PL+ + + Sbjct: 1038 LEPGRSVVILVSAD--MRDDEPSLRVEQVDPIEAVATRVQKSLRVFLRDERPLKSLARQL 1095 Query: 125 ENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 R G++ ++ L G+ E+E+ L Y +SPEIA L+ + G+T V Sbjct: 1096 GGR------GDGEVNVVVLLDGGRREVEVKLPGRYRLSPEIAGALKAVPGVTDV 1143 >gi|13471011|ref|NP_102580.1| DNA polymerase III subunit alpha [Mesorhizobium loti MAFF303099] gi|14021755|dbj|BAB48366.1| DNA polymerase III alpha subunit [Mesorhizobium loti MAFF303099] Length = 1175 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL + +I V+ ED+ + ++R+ V+SLE+++ + +LR+++++ P I Sbjct: 1066 LLEAGRSVVITVAAEDRP--EGVNLRINSVQSLEEEASRIQKALRIFVRNEGPASIIQSQ 1123 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 R + ++ +I ++ + + E+EI L Y +SP+IA + + G+ +V Sbjct: 1124 LTQR------GESQVSIIVIKEEAQGEVEIALQGGYRVSPQIASAMRAVPGVVEV 1172 >gi|218659790|ref|ZP_03515720.1| DNA polymerase III subunit alpha [Rhizobium etli IE4771] Length = 248 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 54/97 (55%), Gaps = 9/97 (9%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +++ + E++ + +R+ ++SLE+KS++M +LRVY++D PL+ + + Sbjct: 160 MLESGKSFLLTATGEERP--EGIGLRIQTIQSLEEKSLQMQKALRVYIRDSGPLKMVAGH 217 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYP 159 N G + I ++ +GK E+E+ L + Y Sbjct: 218 L------NAKGDGLVSFIVIKEEGKREVEVALPEKYR 248 >gi|319783852|ref|YP_004143328.1| DNA polymerase III subunit alpha [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169740|gb|ADV13278.1| DNA polymerase III, alpha subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 1175 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 65/115 (56%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL + +I V+ ED+ + ++R+ V+SLE ++ + +LR+++++ +P+ + Sbjct: 1066 LLEAGRSVVITVAAEDRP--EGVNLRINSVQSLEDEASRIQKALRIFVRNATPINTLAGQ 1123 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 R +G++ + ++ +G+ EIEI L + Y ISP+IA + + G+ +V Sbjct: 1124 LTVR------GEGQVSFVLIKEEGEGEIEIELPNRYRISPQIASAMRAVPGVVEV 1172 >gi|218513825|ref|ZP_03510665.1| DNA polymerase III subunit alpha [Rhizobium etli 8C-3] Length = 86 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 7/89 (7%) Query: 90 LLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKI 149 + ++SLE+KS++M +LRVY++D PL+ + + N G + I ++ +GK Sbjct: 1 IQTIQSLEEKSLQMQKALRVYIRDSGPLKMVAGHL------NAKGDGLVSFIVIKEEGKR 54 Query: 150 EIEITL-DHYPISPEIAFDLEHITGITKV 177 E+E+ L + Y I+PEIA L G+ V Sbjct: 55 EVEVALPEKYRITPEIAAALRAAPGVVDV 83 >gi|220927035|ref|YP_002502337.1| DNA polymerase III subunit alpha [Methylobacterium nodulans ORS 2060] gi|219951642|gb|ACL62034.1| DNA polymerase III, alpha subunit [Methylobacterium nodulans ORS 2060] Length = 1158 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL +P + + + + R+ E L++ +R+YL+D P+ + + Sbjct: 1049 LLEPGRPLALQLQASAE--GEDVRARIQTCEPLDQAVARHQKGMRIYLRDERPIASVQQR 1106 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 R +G++ LI + G+ E+EI L D Y +P+IA L + G+ +V Sbjct: 1107 LTMR------GEGEVSLILILDGGEREVEIRLKDRYQATPQIAGALRAVPGVVQV 1155 >gi|154248204|ref|YP_001419162.1| DNA polymerase III subunit alpha [Xanthobacter autotrophicus Py2] gi|154162289|gb|ABS69505.1| DNA polymerase III, alpha subunit [Xanthobacter autotrophicus Py2] Length = 1150 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 60/115 (52%), Gaps = 4/115 (3%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL P +++V+ E L+ + +R+ E L+ + LR++L+ P+ I + Sbjct: 1036 LLEPGTPLLMMVAAE--LNGEDVRVRINSCEKLDPVTARHQKGLRIFLRSPEPIEGIARR 1093 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 + +T + G++ LI + + E+E++L YPISP+IA ++ I G+ + Sbjct: 1094 LADGKTVDA-GSGEVSLILMVEDARAEVEVSLPGKYPISPQIAGAIKAIPGVVAI 1147 >gi|254560015|ref|YP_003067110.1| DNA polymerase III subunit alpha [Methylobacterium extorquens DM4] gi|254267293|emb|CAX23125.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens DM4] Length = 1173 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L +P ++ + L + R+ E L++ + +R++L+D L + + Sbjct: 1064 ILEPGRPLVLTIQAN--LEGEDVRARITTAEPLDQAAARHQKGMRIFLRDDRALSSVQQR 1121 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 R +G++ LI + G+ E+E+ L D Y +P++A L + G+ +V Sbjct: 1122 LTLR------GEGEVSLILILDGGEREVEVRLKDRYQATPQVAGALRAVPGVVQV 1170 >gi|170744048|ref|YP_001772703.1| DNA polymerase III subunit alpha [Methylobacterium sp. 4-46] gi|168198322|gb|ACA20269.1| DNA polymerase III, alpha subunit [Methylobacterium sp. 4-46] Length = 1168 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL + + + + + R+ E L++ +R+YL+D P+ + + Sbjct: 1059 LLEPGRALALQLQASAE--GEDVRARIQTCEPLDQAVARYQKGMRIYLRDERPIPSVQQR 1116 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 R +G++ LI + G+ E+E+ L D Y SP+IA L + G+ +V Sbjct: 1117 LTTR------GEGEVSLILILDGGEREVEVKLRDRYQASPQIAGALRAVPGVVQV 1165 >gi|188580262|ref|YP_001923707.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001] gi|179343760|gb|ACB79172.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001] Length = 1173 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L +P ++ + L + R+ E L++ + +R++L+D L + + Sbjct: 1064 ILEPGRPLVLTIQAN--LEGEDVRARITTAEPLDQAAARHQKGMRIFLRDDRALSSVQQR 1121 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 R +G++ LI + G+ E+E+ L D Y +P++A L + G+ +V Sbjct: 1122 LTLR------GEGEVSLILILDGGEREVEVRLKDRYQATPQVAGALRAVPGVVQV 1170 >gi|218529177|ref|YP_002419993.1| DNA polymerase III subunit alpha [Methylobacterium chloromethanicum CM4] gi|218521480|gb|ACK82065.1| DNA polymerase III, alpha subunit [Methylobacterium chloromethanicum CM4] Length = 1173 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L +P ++ + L + R+ E L++ + +R++L+D L + + Sbjct: 1064 ILEPGRPLVLTIQAN--LEGEDVRARITTAEPLDQAAARHQKGMRIFLRDDRALSSVQQR 1121 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 R +G++ LI + G+ E+E+ L D Y +P++A L + G+ +V Sbjct: 1122 LTLR------GEGEVSLILILDGGEREVEVRLKDRYQATPQVAGALRAVPGVVQV 1170 >gi|163850481|ref|YP_001638524.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1] gi|240137543|ref|YP_002962014.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1] gi|163662086|gb|ABY29453.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1] gi|240007511|gb|ACS38737.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1] Length = 1173 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L +P ++ + L + R+ E L++ + +R++L+D L + + Sbjct: 1064 ILEPGRPLVLTIQAN--LEGEDVRARITTAEPLDQAAARHQKGMRIFLRDDRALSSVQQR 1121 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 R +G++ LI + G+ E+E+ L D Y +P++A L + G+ +V Sbjct: 1122 LTLR------GEGEVSLILILDGGEREVEVRLKDRYQATPQVAGALRAVPGVVQV 1170 >gi|298291824|ref|YP_003693763.1| DNA polymerase III subunit alpha [Starkeya novella DSM 506] gi|296928335|gb|ADH89144.1| DNA polymerase III, alpha subunit [Starkeya novella DSM 506] Length = 1149 Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL K ++ VS E + + R+ E L++ + +M +R++L+ PL + Sbjct: 1035 LLEPGKALLLQVSAE--MQGEDVRARIQTAEPLDEAASKMQKGMRIFLRSPDPLDSVASR 1092 Query: 124 FENRQTQNYDKQGKIGLIFLR-SQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 + G++ L+ L G E+E+ L Y +SP+IA L+ + G+ +V Sbjct: 1093 LGS--LAGGRGDGEVALVLLLGESGATEVELKLPGRYSLSPQIAGALKAVPGVVQV 1146 >gi|118590015|ref|ZP_01547419.1| DNA polymerase III subunit alpha [Stappia aggregata IAM 12614] gi|118437512|gb|EAV44149.1| DNA polymerase III subunit alpha [Stappia aggregata IAM 12614] Length = 1154 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 67/125 (53%), Gaps = 10/125 (8%) Query: 54 QQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQD 113 +++LE+ + L+ + +++V + + S+R+ V+ +++ + + S+RV+++D Sbjct: 1036 REKLEQFRD-ALQAGRSVVVLVGAD--MRDDEPSLRIEQVDPIDQMAARLQKSMRVFVRD 1092 Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHIT 172 P+ + K + R +G + +I L G E+E+ L + +SPEIA L+ + Sbjct: 1093 ERPIPSLAKQLQVR------GEGDVTVIVLLENGAREVEVKLPGRFRLSPEIAGALKAVP 1146 Query: 173 GITKV 177 G+T V Sbjct: 1147 GVTDV 1151 >gi|307942140|ref|ZP_07657491.1| DNA polymerase III subunit alpha [Roseibium sp. TrichSKD4] gi|307774426|gb|EFO33636.1| DNA polymerase III subunit alpha [Roseibium sp. TrichSKD4] Length = 1159 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 69/131 (52%), Gaps = 10/131 (7%) Query: 48 FLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSL 107 F L +++LE+ + L + +++V + + + SIR+ V+ ++K + + S+ Sbjct: 1035 FEGLLFKEKLEQFRD-ALEPGRSVVLLVGAD--MRDDKPSIRIEQVDPIDKVAANLQKSM 1091 Query: 108 RVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAF 166 V+L+D P+ + ++ + R +G + +I +G+ E+E+ L Y +SPEIA Sbjct: 1092 MVFLRDERPVESLVRHLKVR------GEGNVTVIVQLDRGQREVEVKLPGRYRLSPEIAG 1145 Query: 167 DLEHITGITKV 177 L+ + G+ V Sbjct: 1146 ALKAVPGVMDV 1156 >gi|254505207|ref|ZP_05117358.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia alexandrii DFL-11] gi|222441278|gb|EEE47957.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia alexandrii DFL-11] Length = 1138 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 66/125 (52%), Gaps = 10/125 (8%) Query: 54 QQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQD 113 +++LE+ + +L+ + +++V + + S+ + V+ ++K + + S+RV+++D Sbjct: 1020 REKLEQFRD-VLQTGRSVVVLVGAD--MRDDEPSLIIEQVDPIDKVAARLQKSMRVFVRD 1076 Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHIT 172 P+ + K R +G + +I L G E+E+ L + +SPEIA L+ + Sbjct: 1077 DRPIASLAKQLTVR------GEGDVTVIVLLENGAREVEVKLPGRFRLSPEIAGALKAVP 1130 Query: 173 GITKV 177 G+T V Sbjct: 1131 GVTDV 1135 >gi|49474348|ref|YP_032390.1| DNA polymerase III subunit alpha [Bartonella quintana str. Toulouse] gi|49239852|emb|CAF26246.1| DNA polymerase III alpha subunit [Bartonella quintana str. Toulouse] Length = 1162 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +II VS E++ + S+RL +SLE ++ + +R++++ L +I + Sbjct: 1053 MLEPGKSFIITVSAENR--SEGVSLRLETAQSLENEAAQHHKMMRLFIKTVDMLPQIEQN 1110 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 N + G++GLI ++ G E+EITL Y + + ++ I G+ V Sbjct: 1111 L------NPNGNGEVGLILIQEDGLREVEITLPKRYKVDSSVVSAMKSIHGVVDV 1159 >gi|121602736|ref|YP_989159.1| DNA polymerase III subunit alpha [Bartonella bacilliformis KC583] gi|120614913|gb|ABM45514.1| DNA polymerase III, alpha subunit [Bartonella bacilliformis KC583] Length = 1161 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 60/115 (52%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +II VS E++ + S+RL +SLE+++++ +R+++ L +I + Sbjct: 1052 MLEPGKSFIITVSAENR--SEGISLRLETAQSLEEEAVQHHKMMRLFINTVDILSQIEQN 1109 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 N G++G++ ++ G E+E+ L Y +S +A ++ + G+ V Sbjct: 1110 L------NSGGNGEVGIVLIQENGSREVEVLLPKRYKVSLNVARAIKTLHGVLDV 1158 >gi|319898845|ref|YP_004158938.1| DNA polymerase III alpha subunit [Bartonella clarridgeiae 73] gi|319402809|emb|CBI76360.1| DNA polymerase III alpha subunit [Bartonella clarridgeiae 73] Length = 1162 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 58/115 (50%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +II V ED+ + S+R+ +ESLE++++ +R++++ L +I + Sbjct: 1053 MLESGKSFIITVIAEDR--SEGISLRIETIESLEEQALRHHKMMRLFIKTTDMLPQIKQN 1110 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 ++ G++ LI ++ G E+EI L Y + + ++ + GI V Sbjct: 1111 LDS------KGNGEVALILIQEDGLREVEIALPKKYKVDSRVVNAMKALPGIVDV 1159 >gi|319408651|emb|CBI82306.1| DNA polymerase III alpha subunit [Bartonella schoenbuchensis R1] Length = 1162 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 60/115 (52%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +I+ V ED+ + +R+ ++SLEK+S+ ++R++++ L +I +Y Sbjct: 1053 MLEPGKSFIVTVIAEDR--SEGIGLRIETIQSLEKESIRDCKTMRLFIKTADILPQIEQY 1110 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 + G++ I ++ G E+E+ L Y ++ ++A ++ I G+ V Sbjct: 1111 LKP------GGNGEVAFILIQENGVREVEVMLSKRYKVNLQVANAIKAIHGVIDV 1159 >gi|218459887|ref|ZP_03499978.1| DNA polymerase III subunit alpha [Rhizobium etli Kim 5] Length = 74 Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 7/77 (9%) Query: 102 EMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPI 160 +M +LRVY++D PL+ + + N G + I ++ +GK E+E+ L + Y I Sbjct: 1 QMQKALRVYIRDSGPLKMVAGHL------NAKGDGLVSFIVIKEEGKREVEVALPEKYRI 54 Query: 161 SPEIAFDLEHITGITKV 177 +PEIA L G+ V Sbjct: 55 TPEIAAALRAAPGVVDV 71 >gi|49475735|ref|YP_033776.1| DNA polymerase III subunit alpha [Bartonella henselae str. Houston-1] gi|49238542|emb|CAF27778.1| DNA polymerase III alpha subunit [Bartonella henselae str. Houston-1] Length = 1162 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +II VS E++ + S+RL +SLEK++ + +R++++ L +I Sbjct: 1053 ILELGKSFIITVSAENR--SEGVSLRLETAQSLEKEAAQHHKMMRLFIKTVDMLPQI--- 1107 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 +Q N G++ LI ++ G E+EITL Y ++ +A L+ I G+ V Sbjct: 1108 ---QQNLNPSGNGEVALILIQEDGLREVEITLPKRYKVNSRVASALKSIQGVVDV 1159 >gi|254469239|ref|ZP_05082644.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio sp. JE062] gi|211961074|gb|EEA96269.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio sp. JE062] Length = 1144 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 56/115 (48%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL +++V + + + S+R+ VE LEK + + +LR++L P+ + + Sbjct: 1035 LLEPGASVVLLVQAD--MRDEEVSVRISQVEPLEKVAGRVHRTLRIFLGSDEPIASLQRQ 1092 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 G++ + L G+ E+E+ L +Y +SP+++ L+ + G+ V Sbjct: 1093 L------RRGGDGEVSCVVLLDDGQREVEVKLPGNYQLSPQLSGALKTLPGVMDV 1141 >gi|319404155|emb|CBI77748.1| DNA polymerase III alpha subunit [Bartonella rochalimae ATCC BAA-1498] Length = 1162 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +II V ED+ + S+R+ ++SLE+++++ +R++L+ L +I + Sbjct: 1053 MLEPGKSFIITVVAEDR--SEGISLRIETIQSLEEQALQCHKMMRIFLKTIDMLPQIEQN 1110 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 N + +G++ L+ ++ G E+EI L + Y ++ + ++ ++G+ V Sbjct: 1111 L------NSEGKGEVALVLIQEDGLREVEIALPERYKVNAHVVNAIKVLSGVVDV 1159 >gi|240850744|ref|YP_002972144.1| DNA polymerase III subunit alpha [Bartonella grahamii as4aup] gi|240267867|gb|ACS51455.1| DNA polymerase III subunit alpha [Bartonella grahamii as4aup] Length = 1164 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +II VS E++ + S+R+ ++SLE++S++ +R++++ L +I + Sbjct: 1055 MLEPGKSFIITVSAENR--SEGVSLRIETIQSLEQESLKQHKMMRLFIKTVDMLPQIEQN 1112 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 N G++GLI ++ G E+EI L Y ++ +A ++ I G+ V Sbjct: 1113 L------NLGGNGEVGLILIQEDGLREVEIALPKRYKVNSHVANAMKLIQGVVDV 1161 >gi|163868512|ref|YP_001609721.1| DNA polymerase III subunit alpha [Bartonella tribocorum CIP 105476] gi|161018168|emb|CAK01726.1| DNA polymerase III alpha subunit [Bartonella tribocorum CIP 105476] Length = 1155 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 61/115 (53%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +II VS E++ + S+R+ ++SLE ++++ +R++++ L +I + Sbjct: 1046 MLEPGKSFIITVSAENR--SEGASLRIETIQSLENEALQQHKMMRLFIKTVDMLPQIEQN 1103 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 N G++GLI ++ G E+EI L Y ++ +A ++ I G+ V Sbjct: 1104 L------NLGGNGEVGLILIQEDGLREVEIALPKRYKVNSHVANAMKLIQGVVDV 1152 >gi|319407174|emb|CBI80813.1| DNA polymerase III alpha subunit [Bartonella sp. 1-1C] Length = 1140 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +II V ED+ + S+R+ ++SLE+++++ +R++L+ L +I + Sbjct: 1031 MLELGKSFIITVIAEDR--SEGISLRIETIQSLEEQALQCHKMMRIFLKTIDTLSQIEQN 1088 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 N + +G++ LI ++ G E+EI L + Y ++ + ++ ++G+ V Sbjct: 1089 L------NSEGKGEVALILIQEDGLREVEIALPERYKVNAHVVNAIKVLSGVVDV 1137 >gi|319405608|emb|CBI79231.1| DNA polymerase III alpha subunit [Bartonella sp. AR 15-3] Length = 1140 Score = 99.7 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 56/115 (48%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K +II V ED+ + ++R+ V+SL++ + + +R++++ L +I + Sbjct: 1031 MLEPGKSFIITVIAEDR--SEGINLRIETVQSLDEDAFQYHKMMRLFIKTTDMLSQIEQN 1088 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177 ++ G+I ++ ++ E+EI L Y + + ++ + G+ V Sbjct: 1089 LDS------KGNGEIAIVLIQEDEFREVEIALPKRYKVDTRVVNAMKALPGVIDV 1137 >gi|304391642|ref|ZP_07373584.1| DNA polymerase III subunit alpha [Ahrensia sp. R2A130] gi|303295871|gb|EFL90229.1| DNA polymerase III subunit alpha [Ahrensia sp. R2A130] Length = 1166 Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 9/118 (7%) Query: 59 EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLR 118 E LL+ + I+ V ED+ + S+R++ + +E ++ L ++L+D SPL Sbjct: 1052 EAASELLQAGRSLILNVVGEDRP--EGVSLRVMMIRGIEDEAARTQYLLNIFLRDASPLP 1109 Query: 119 EIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYP-ISPEIAFDLEHITGIT 175 I +G + L+ + G E+E+ L +SP+IA L+ I G+ Sbjct: 1110 SIASQL------GKQGEGIVKLVVIDFDGGREVEVELPGKRLVSPQIANALKAIDGVV 1161 >gi|90423933|ref|YP_532303.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisB18] gi|90105947|gb|ABD87984.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisB18] Length = 1185 Score = 98.2 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 16/130 (12%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L ++ + E L + R+L E L+ + + LR++L+D PL I K Sbjct: 1059 VLEPGGAVLLQLGAE--LQGEDVRARILHAEPLDDAAAKTQKGLRIFLRDTKPLESIAKR 1116 Query: 124 FE------------NRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEH 170 + + + G++ L+ + + E+E+ L + +SP+IA ++ Sbjct: 1117 LQMPEAGGGGSATPASEPKRPGGDGEVTLVMMLDL-ETEVEMKLPGRFRVSPQIAGAIKA 1175 Query: 171 ITGITKVVQV 180 + G+ V V Sbjct: 1176 VQGVVDVQTV 1185 >gi|85716997|ref|ZP_01047960.1| DNA polymerase III subunit alpha [Nitrobacter sp. Nb-311A] gi|85696199|gb|EAQ34094.1| DNA polymerase III subunit alpha [Nitrobacter sp. Nb-311A] Length = 1167 Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 14/128 (10%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L ++ + E L + R+ E L+ + + LR++L+D PL I + Sbjct: 1043 VLEPGAAVLLQLDAE--LQGEDVRARVSRAEPLDDAAAKTQKGLRIFLRDSKPLESIERR 1100 Query: 124 FENRQ----------TQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHIT 172 + + G + ++ L + E+EI L + +SP+IA ++ ++ Sbjct: 1101 LQANENGDPAGGAGVAARQAGDGDVSVVMLLDL-ETEVEIKLPGRFRVSPQIAGAIKAVS 1159 Query: 173 GITKVVQV 180 G+ V + Sbjct: 1160 GVVDVQAI 1167 >gi|115524557|ref|YP_781468.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisA53] gi|115518504|gb|ABJ06488.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisA53] Length = 1165 Score = 97.4 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 16/130 (12%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L ++ + E L + R+L E L+ + + LR++L+D PL I K Sbjct: 1039 VLEPGAAVLMQLGAE--LQGEDVRARILQAEPLDDAAAKTQKGLRIFLRDTKPLDSIEKR 1096 Query: 124 FENR------------QTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEH 170 ++ + G + L+ + + E+E+ L + +SP+IA ++ Sbjct: 1097 LKSPDAAAIPAAPAAGRRSGGAGDGDVTLVMMLDL-ETEVEMKLPGRFRVSPQIAGAIKA 1155 Query: 171 ITGITKVVQV 180 ++G+ V V Sbjct: 1156 VSGVVDVQTV 1165 >gi|75676051|ref|YP_318472.1| DNA polymerase III subunit alpha [Nitrobacter winogradskyi Nb-255] gi|74420921|gb|ABA05120.1| DNA polymerase III, alpha subunit [Nitrobacter winogradskyi Nb-255] Length = 1168 Score = 97.4 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 15/129 (11%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L ++ + E L + R+ E L+ + + LR++L+D PL I K Sbjct: 1043 VLEPGAAVLLQLDAE--LQGEEVRARVSRAEPLDDAAAKTQKGLRIFLRDSRPLESIEKR 1100 Query: 124 FENR-----------QTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHI 171 + +G++ L+ + + E+EI L + +SP+IA ++ + Sbjct: 1101 LQANDNGDPAGAAKVPASRQAGEGEVSLVMMLDL-ETEVEIKLPGRFRVSPQIAGAIKAV 1159 Query: 172 TGITKVVQV 180 TG+ V + Sbjct: 1160 TGVVDVQAI 1168 >gi|92117240|ref|YP_576969.1| DNA polymerase III subunit alpha [Nitrobacter hamburgensis X14] gi|91800134|gb|ABE62509.1| DNA polymerase III, alpha subunit [Nitrobacter hamburgensis X14] Length = 1168 Score = 94.3 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 15/129 (11%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L ++ + E L R+L E L+ + + LR++L+D PL I + Sbjct: 1043 VLEPGAAVLMQLGAE--LQGDEVRARVLHAEPLDDAAAKTQRGLRIFLRDTRPLDSIVRR 1100 Query: 124 FENRQ-----------TQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHI 171 + + G + L+ L + E+EI L + +SP++A ++ + Sbjct: 1101 LQTPENDGPAGAAKVPASRQSGDGDVSLVMLLDL-ETEVEIKLPGRFRVSPQVAGAIKAV 1159 Query: 172 TGITKVVQV 180 +G+ V + Sbjct: 1160 SGVVDVQAI 1168 >gi|209885082|ref|YP_002288939.1| DNA polymerase III subunit alpha [Oligotropha carboxidovorans OM5] gi|209873278|gb|ACI93074.1| DNA polymerase III subunit alpha [Oligotropha carboxidovorans OM5] Length = 1157 Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 8/119 (6%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL ++ +S E L + R+ VE L++ + + +L+++L+D PL I + Sbjct: 1039 LLEPGLAVLLQLSAE--LQGEDVRARIANVELLDQAAAKTSMALKIFLRDDKPLESIRRR 1096 Query: 124 FENRQTQNYDKQ----GKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 E+ G++ L+ + + E+E+ L D Y +SP+IA L+ ITG+ V Sbjct: 1097 LEDHARGGGAGSSARAGEVTLVMMLDL-ETEVEMRLRDRYKVSPQIAGALKAITGVVDV 1154 >gi|148255875|ref|YP_001240460.1| DNA polymerase III subunit alpha [Bradyrhizobium sp. BTAi1] gi|146408048|gb|ABQ36554.1| DNA polymerase III, alpha subunit [Bradyrhizobium sp. BTAi1] Length = 1173 Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 20/134 (14%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L ++ + E L + R+L E L+ + + LR++L+D PL I K Sbjct: 1043 VLEPGAAVLLQLGAE--LQGEDVRARVLHAEPLDDAAAKTQRGLRIFLRDTKPLDSIVKR 1100 Query: 124 FENRQTQNYD----------------KQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAF 166 + + +G++ L+ + + E+E+ L + +SP+IA Sbjct: 1101 LQGPEAAANGAGGPAKSAAPPLAPRAGEGEVSLVMMLDL-ETEVEMKLPGRFKVSPQIAG 1159 Query: 167 DLEHITGITKVVQV 180 ++ +TG+ V Q+ Sbjct: 1160 AIKAVTGVVDVQQL 1173 >gi|323136417|ref|ZP_08071499.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242] gi|322398491|gb|EFY01011.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242] Length = 1153 Score = 90.9 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L + ++ +S + + R++ VE L + LR+ ++D+SPL I Sbjct: 1044 VLEKGAAVLVTLSAS--VEGEDVRARIVAVEPLANAAARAQKGLRIVVRDQSPLDRIKNK 1101 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 +G++ L+ R EIEI L YP++ ++A L I G+ V Sbjct: 1102 LT------GKGEGEVSLLIKRDVAPEEIEIRLPGSYPVNAQVASALRAIPGVVDV 1150 >gi|296447359|ref|ZP_06889286.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b] gi|296255138|gb|EFH02238.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b] Length = 1150 Score = 90.9 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 9/118 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL + ++ +S + + R+ VE L + LR++L+D +PL +I Sbjct: 1041 LLEKGATVMVTLSAS--VEGEDVRARITAVEPLAAAVAKTQKGLRIFLRDAAPLDKIKSR 1098 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180 R +G++ L+ +G E+EI L Y +SP++A L+ I G+T V V Sbjct: 1099 LSAR------GEGEVSLVVSLERGASEVEIKLPGGYTVSPDMAGALQTIPGVTAVEHV 1150 >gi|27379977|ref|NP_771506.1| DNA polymerase III subunit alpha [Bradyrhizobium japonicum USDA 110] gi|27353130|dbj|BAC50131.1| DNA polymerase III alpha chain [Bradyrhizobium japonicum USDA 110] Length = 1167 Score = 90.5 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 20/134 (14%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L ++ + E L + R+L E L+ + + LR++L+D L I K Sbjct: 1037 VLEPGAAVLLQLGAE--LQGEDVRARVLHAEPLDDAAAKTQKGLRIFLRDTKALESIAKR 1094 Query: 124 FENRQT----------------QNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAF 166 + + G++ L+ + + E+E+ L + +SP+IA Sbjct: 1095 LAGPEMASSNGAAPKVGSPGIAPRSNGDGEVLLVMMLDL-ETEVEMKLPGRFKVSPQIAG 1153 Query: 167 DLEHITGITKVVQV 180 ++ + G+ V Q+ Sbjct: 1154 AIKAVAGVVDVQQL 1167 >gi|182678571|ref|YP_001832717.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182634454|gb|ACB95228.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 1159 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 68/143 (47%), Gaps = 12/143 (8%) Query: 39 LQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK 98 +Q +++ + ++ Q+ L + + +L + ++ + + + R+L VE L++ Sbjct: 1028 VQLSDQSGQYEAILFQESLNQYRD-MLEKGSAVLLALQAN--VDGEDVRARILSVEPLDQ 1084 Query: 99 KSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DH 157 + + LRV++++ L + + R G+I LI + + G E+E+ L Sbjct: 1085 AASRIQKGLRVFVRNEDSLASVAQKLTTR------GDGEISLILMTNGG--EVEVRLPGT 1136 Query: 158 YPISPEIAFDLEHITGITKVVQV 180 + +S ++A L+ I GI V + Sbjct: 1137 FNVSAQLAGSLKTIPGIVAVEPI 1159 >gi|146341074|ref|YP_001206122.1| DNA polymerase III subunit alpha [Bradyrhizobium sp. ORS278] gi|146193880|emb|CAL77897.1| DNA polymerase III, alpha subunit [Bradyrhizobium sp. ORS278] Length = 1174 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 59/136 (43%), Gaps = 22/136 (16%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L ++ + E L + R+L E L+ + + LR++L+D PL I K Sbjct: 1042 VLEPGAAVLLQLGAE--LQGEDVRARVLHAEPLDDAAAKTQRGLRIFLRDTKPLDSIVKR 1099 Query: 124 FE------------------NRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEI 164 + + +G++ L+ + + E+E+ L + +SP+I Sbjct: 1100 LQGDGAAANGNGAVAKGPATAPPPRAAAGEGEVSLVMMLDL-ETEVEMKLPGRFKVSPQI 1158 Query: 165 AFDLEHITGITKVVQV 180 A ++ +TG+ +V Q+ Sbjct: 1159 AGAIKAVTGVVEVQQL 1174 >gi|170748452|ref|YP_001754712.1| DNA polymerase III, alpha subunit [Methylobacterium radiotolerans JCM 2831] gi|170654974|gb|ACB24029.1| DNA polymerase III, alpha subunit [Methylobacterium radiotolerans JCM 2831] Length = 1172 Score = 88.2 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 9/115 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L +P ++ + L + R+L E L++ +R++L D + + + Sbjct: 1063 ILEPGRPLVLQLQAN--LEGEDVRARILTAEPLDQAVARHQKGIRIHLSDPRGVAPVQQR 1120 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 R + ++ LI G+ E+EI L + SP +A L + G+ +V Sbjct: 1121 LSMR------GESEVSLILKLDGGEREVEIRLPGKFQASPALAGQLRTVPGVVQV 1169 >gi|316933919|ref|YP_004108901.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris DX-1] gi|315601633|gb|ADU44168.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris DX-1] Length = 1151 Score = 83.9 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 6/115 (5%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L ++ + E L + R+L E L+ + + LR++L+D PL + K Sbjct: 1039 VLEPGAAVLMQLGAE--LQGEDVRARVLHAEPLDAAAAKTQKGLRIFLRDTKPLESLTKR 1096 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 + +++ + L+ LR + E+E + + +SP+IA ++ ++G+ V Sbjct: 1097 LQPPESRAAGGN--VALV-LRLDPQTEVEFEIPGRFQVSPQIAGAIKAVSGVEHV 1148 >gi|299135003|ref|ZP_07028194.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2] gi|298589980|gb|EFI50184.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2] Length = 1135 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 5/117 (4%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L ++ ++ E L + R+ VE L++ + + +L+++L+D P+ I + Sbjct: 1018 MLEPGLVVLLQLAAE--LQGEDVRARINNVELLDQAAAKTPMALKIFLRDGKPVESIRRR 1075 Query: 124 FENRQTQNYDKQGKIG--LIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 E+ + G G + + + E+++ L + +SP+IA L+ ITG+ V Sbjct: 1076 LEDHAQGAAARSGSAGEVTVVMMLDLETEVDMKLPGRFKVSPQIAGALKAITGVVDV 1132 >gi|91977328|ref|YP_569987.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisB5] gi|91683784|gb|ABE40086.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisB5] Length = 1151 Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 6/115 (5%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L ++ + E L + R+L E L+ + + LR++L+D PL I K Sbjct: 1039 VLEPGAAVLLQLGAE--LQGEDVRARVLHAEPLDAAAAKTQKGLRIFLRDTKPLDSISKR 1096 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 + +T+ I L+ LR + E+E + + +SP+IA ++ + G+ V Sbjct: 1097 LQPPETKVAGGN--IALV-LRLDPQTEVEFEIPGRFQVSPQIAGAIKAVIGVEHV 1148 >gi|86749719|ref|YP_486215.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris HaA2] gi|86572747|gb|ABD07304.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris HaA2] Length = 1151 Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 6/112 (5%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L ++ + E L + R+L E L+ + + LR++L+D PL I K Sbjct: 1039 VLEPGAAVLLQLGAE--LQGEDVRARVLHAEPLDAAAAKTQKGLRIFLRDTKPLDSITKR 1096 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGI 174 + +++ I L+ LR E+E L + +SP+IA ++ +TG+ Sbjct: 1097 LQPPESKVSGGN--IALV-LRLDPHTEVEFELPGRFQVSPQIAGAIKAVTGV 1145 >gi|192291642|ref|YP_001992247.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris TIE-1] gi|192285391|gb|ACF01772.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris TIE-1] Length = 1151 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 6/115 (5%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L ++ + E L + R+L E L+ + + LR++L+D L + K Sbjct: 1039 VLEPGAAVLMQLGAE--LQGEDVRARVLHAEPLDAAAAKTQKGLRIFLRDTKFLDSVVKR 1096 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 + +T+ I L+ LR + E+E + Y +SP+IA ++ +TG+ V Sbjct: 1097 LQPPETKVAGGN--IALV-LRLDPQTEVEFDIPGRYHVSPQIAGAIKAVTGVEHV 1148 >gi|39935989|ref|NP_948265.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris CGA009] gi|39649843|emb|CAE28365.1| DNA polymerase III alpha subunit [Rhodopseudomonas palustris CGA009] Length = 1151 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 6/115 (5%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L ++ + E L + R+L E L+ + + LR++L+D L + K Sbjct: 1039 VLEPGAAVLMQLGAE--LQGEDVRARVLHAEPLDAAAAKTQKGLRIFLRDTKFLDSVVKR 1096 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 + +T+ I L+ LR + E+E + Y +SP+IA ++ +TG+ V Sbjct: 1097 LQPPETKVAGGN--IALV-LRLDPQTEVEFDIPGRYHVSPQIAGAIKAVTGVEHV 1148 >gi|217977860|ref|YP_002362007.1| DNA polymerase III, alpha subunit [Methylocella silvestris BL2] gi|217503236|gb|ACK50645.1| DNA polymerase III, alpha subunit [Methylocella silvestris BL2] Length = 1152 Score = 77.4 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 11/118 (9%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL + ++V+ + R++ E L+ + + LR+++ D PL +I Sbjct: 1045 LLEKGASLLLVLQAA--VEGDEVRARIVSAEPLDHAASRVQKGLRIFVADDKPLDQI--- 1099 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180 +Q+ G++ LI + EIE+ L Y +S + A L+ I GI V V Sbjct: 1100 ---KQSLRPQGDGEVALIL--QTPECEIELKLPGKYGVSAQSAGALKAIPGILAVEHV 1152 >gi|154253636|ref|YP_001414460.1| DNA polymerase III subunit alpha [Parvibaculum lavamentivorans DS-1] gi|154157586|gb|ABS64803.1| DNA polymerase III, alpha subunit [Parvibaculum lavamentivorans DS-1] Length = 1139 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 56/119 (47%), Gaps = 10/119 (8%) Query: 63 RLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHK 122 +L+ ++ V E + + +R + S+++ + L+++++D+S + + Sbjct: 1030 QLMEPGSAVVLNV--EIERIGEEVKLRAQSLRSVDEVVKDTGAGLKIFIEDKSSIEPLKS 1087 Query: 123 YFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180 R +G + LI + G E+E+ L D Y ++P++ ++ + GI ++ + Sbjct: 1088 RLAER------GKGIVSLILMTEGGG-EVELKLKDRYRVTPQLRGAIKSVPGIVEIQDI 1139 >gi|288962247|ref|YP_003452542.1| DNA polymerase III subunit alpha [Azospirillum sp. B510] gi|288914513|dbj|BAI75998.1| DNA polymerase III subunit alpha [Azospirillum sp. B510] Length = 1167 Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 8/118 (6%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL +P ++ V + L+ + + ++ LE+ + LRV L+D SP+ + Sbjct: 1057 LLEPGRPVLMTVDAQ--LNGEEVRLTCQEIKPLEEAVASVSAGLRVVLRDPSPIE----H 1110 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180 + + +I + + EIEI L Y I+ + L+ + G+ +V ++ Sbjct: 1111 LRATLDRLSRGKSRIN-VLVEVDPLKEIEIELPGSYTITAQSRSALKAVPGVVEVAEL 1167 >gi|83592917|ref|YP_426669.1| DNA polymerase III subunit alpha [Rhodospirillum rubrum ATCC 11170] gi|83575831|gb|ABC22382.1| DNA polymerase III, alpha subunit [Rhodospirillum rubrum ATCC 11170] Length = 1170 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 9/118 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL +P + V + +L + + +E L+ ++V D P+ + Sbjct: 1061 LLDSGRPLL--VRADARLEGEEVRLLAQAIELLDDAVARAARRIKVSFSDSGPIPRLA-- 1116 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180 + D G ++ + G E+E LD + + E L ++ G+ +V +V Sbjct: 1117 ----EIIRADGPGNRNILLVADLGDREVEFRLDGGFALRSETLAALRNVPGVGEVREV 1170 >gi|144899840|emb|CAM76704.1| DNA polymerase III alpha subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 1159 Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 54/118 (45%), Gaps = 9/118 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L P + V +L ++ + + SL++++ + L+++++D +P+ + Sbjct: 1050 ILEAGGPLLFEVDA--RLEEEQLRLTCQRIASLDQEAAKAAAGLKIFIRDDAPIPTLV-- 1105 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180 Q + +G+ + + G E+E+ L + +SP L ++G+ V ++ Sbjct: 1106 ----QLIAKEAKGRNRITIVSQLGTREVEVGLKNTISLSPGFMGALRSVSGVVDVEEI 1159 >gi|260576275|ref|ZP_05844267.1| DNA polymerase III, alpha subunit [Rhodobacter sp. SW2] gi|259021543|gb|EEW24847.1| DNA polymerase III, alpha subunit [Rhodobacter sp. SW2] Length = 1144 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 7/118 (5%) Query: 65 LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME-MLDSLRVYLQDRSPLREIHKY 123 L ++ V E L + + V+ +++ + E SLR++L Sbjct: 1032 LEPGMNVVLTVKAE--LEGETLKLLANAVQPIDQVAAEAGGASLRIHLN--RAEAAASVA 1087 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180 + +N +G+I ++ + Q EI++TL YP++P+I ++ + G+ V +V Sbjct: 1088 ALFARVENSRSRGQI-ILCIPDQTGREIDLTLPADYPVTPQIKGAIKAMPGVVLVEEV 1144 >gi|300023432|ref|YP_003756043.1| DNA polymerase III subunit alpha [Hyphomicrobium denitrificans ATCC 51888] gi|299525253|gb|ADJ23722.1| DNA polymerase III, alpha subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 1180 Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 7/120 (5%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQD---RSPLREI 120 LL P I+ V E +R+ +E+L+K + + +LRV L Sbjct: 1063 LLEPGTPVIVSVEAE--RDGDTLKMRVQSIEALDKAAAGVARNLRVVLDQRECAGANGAR 1120 Query: 121 HKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQ 179 +R + G++ ++ E+++ L Y +SP A + + + +V++ Sbjct: 1121 LAEISSRLKPTHRG-GEVRIVLPLLDRGCEVDLILPGRYDVSPLEAGRIAALPIVVEVIE 1179 >gi|163744574|ref|ZP_02151934.1| DNA polymerase III, alpha subunit [Oceanibulbus indolifex HEL-45] gi|161381392|gb|EDQ05801.1| DNA polymerase III, alpha subunit [Oceanibulbus indolifex HEL-45] Length = 1161 Score = 58.1 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 46/119 (38%), Gaps = 5/119 (4%) Query: 65 LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME-MLDSLRVYLQDRSPLREIHKY 123 L +I V E + + + V ++ + LRV++ ++ + Sbjct: 1045 LEVGSKIVITV--EATMESDQLKLLGRSVAPIDAAVADAGSMGLRVFIDGPGAIQAVADV 1102 Query: 124 F-ENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180 RQ +G + + E+E+ L +P++P+I + + G+ +V ++ Sbjct: 1103 LDGARQAVKAAGKGPVQFCLMDPSLPGEVEVDLGREFPVTPQIKGAIRSLDGVMEVEEI 1161 >gi|315111547|ref|YP_508882.2| DNA polymerase III subunit alpha [Jannaschia sp. CCS1] Length = 1177 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 4/118 (3%) Query: 65 LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYF 124 L II E L ++ + V+ ++ + LRV+++D S + + Sbjct: 1062 LETGSNVII--QAEATLEAEQLKLLGRSVQPVDGAIASEANGLRVFIEDESGVASVESLL 1119 Query: 125 ENRQTQNYDK-QGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180 E +G I L + E+E+ L D +P+SP+I L + G+ V +V Sbjct: 1120 ERTAGDAAKSSKGPIHLCLMAPDLPGEVEVILGDSFPVSPQIKGALRSLEGVVMVEEV 1177 >gi|88862980|gb|ABD53857.1| DNA polymerase III, alpha subunit [Jannaschia sp. CCS1] Length = 1155 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 4/118 (3%) Query: 65 LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYF 124 L II E L ++ + V+ ++ + LRV+++D S + + Sbjct: 1040 LETGSNVII--QAEATLEAEQLKLLGRSVQPVDGAIASEANGLRVFIEDESGVASVESLL 1097 Query: 125 ENRQTQNYDK-QGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180 E +G I L + E+E+ L D +P+SP+I L + G+ V +V Sbjct: 1098 ERTAGDAAKSSKGPIHLCLMAPDLPGEVEVILGDSFPVSPQIKGALRSLEGVVMVEEV 1155 >gi|254466532|ref|ZP_05079943.1| DNA polymerase III, alpha subunit subfamily, putative [Rhodobacterales bacterium Y4I] gi|206687440|gb|EDZ47922.1| DNA polymerase III, alpha subunit subfamily, putative [Rhodobacterales bacterium Y4I] Length = 1148 Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 6/127 (4%) Query: 57 LEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKK-SMEMLDSLRVYLQDRS 115 LE+ + L +I E + + + + V ++ + SLRVYL D S Sbjct: 1025 LEKSREY-LETGAKVVIT--AEATMESDQLKLLVRSVGPVDSAIADAGRSSLRVYLSDAS 1081 Query: 116 PLREIHKYFE-NRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITG 173 + + + E + +G++ + ++E+ L +PI+P+I L+ + G Sbjct: 1082 AVGTVAQVLEDAKAAARNASRGEVYMYLQDPGLPGDVEMDLGQAFPINPQIKGALKSLDG 1141 Query: 174 ITKVVQV 180 + V ++ Sbjct: 1142 VMDVEEI 1148 >gi|254488409|ref|ZP_05101614.1| DNA polymerase III, alpha subunit subfamily, putative [Roseobacter sp. GAI101] gi|214045278|gb|EEB85916.1| DNA polymerase III, alpha subunit subfamily, putative [Roseobacter sp. GAI101] Length = 1177 Score = 57.4 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 52/119 (43%), Gaps = 5/119 (4%) Query: 65 LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME-MLDSLRVYLQDRSPLREIHKY 123 L +++V E + + + V +++ + LR+++Q+ + ++ + Sbjct: 1061 LETGSKVVVMV--EATMESDQLKLLGRSVAAIDDVVADAGNMGLRIFVQEAAAIQAVADV 1118 Query: 124 F-ENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180 R +G I L + E+E+ L YP++P+I + ++G+ +V ++ Sbjct: 1119 LAGARSAAKSAGKGPIQLCLIDPSLPGEVEVDLCSEYPMTPKIKGAIRSLSGVMEVEEI 1177 >gi|254463266|ref|ZP_05076682.1| DNA polymerase III, alpha subunit subfamily, putative [Rhodobacterales bacterium HTCC2083] gi|206679855|gb|EDZ44342.1| DNA polymerase III, alpha subunit subfamily, putative [Rhodobacteraceae bacterium HTCC2083] Length = 1168 Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 50/119 (42%), Gaps = 5/119 (4%) Query: 65 LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME-MLDSLRVYLQDRSPLREIHKY 123 L ++ V E + + + V ++ + SLR+++++ + I Sbjct: 1052 LETGAKVVVTV--EANMESDQLKLLGRSVAPIDVVVADAGQTSLRIFVENSGAVENIASV 1109 Query: 124 FENRQTQNYDK-QGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180 Q +G + L L S E+E+ L +P++P+I L+ + G+ +V +V Sbjct: 1110 LTRAQETVKQGARGPVLLCLLDSGLPGEVEVDLGREFPVNPQIKGALKSLDGVMQVEEV 1168 >gi|296536131|ref|ZP_06898260.1| DNA-directed DNA polymerase III alpha subunit [Roseomonas cervicalis ATCC 49957] gi|296263543|gb|EFH10039.1| DNA-directed DNA polymerase III alpha subunit [Roseomonas cervicalis ATCC 49957] Length = 1147 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 10/116 (8%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L E + VS E ++ + + +E L+K + + +R++L+D + I Sbjct: 1037 ILTEGNAVL--VSCEARMEGETLRLTAQGIEELDKAASGVGQQIRLWLEDAVAIEPI--- 1091 Query: 124 FENRQTQNYDKQGKIGLIFL-RSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 R+ + QG+ +I + R E+E+ L + +SP +A L+ + G+ V Sbjct: 1092 ---REMLAREGQGRGRVILIPRLGEGQELEVVLPGAWNVSPRLAQALKVVPGVASV 1144 >gi|46202448|ref|ZP_00208519.1| COG0587: DNA polymerase III, alpha subunit [Magnetospirillum magnetotacticum MS-1] Length = 1115 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 9/118 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL P +I V KL ++ + + SL++++ + +R+ + D S +R++ + Sbjct: 1006 LLDAGGPLLIDVDA--KLEEEQLRMTCQRIASLDQEAAKAAAGIRIIISDDSAIRQLAEL 1063 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180 + ++ ++ E+E+ L + +SP+ L I GI +V ++ Sbjct: 1064 INGE----ARGRNRVAIVARADN--REVELGLKSNITLSPKFMGSLRSIPGIVEVEEI 1115 >gi|209964522|ref|YP_002297437.1| DNA polymerase III subunit alpha [Rhodospirillum centenum SW] gi|209957988|gb|ACI98624.1| DNA polymerase III alpha subunit [Rhodospirillum centenum SW] Length = 1165 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 46/115 (40%), Gaps = 8/115 (6%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL + +++V + + + + V LE++ +R+ ++D +PL + Sbjct: 1055 LLEAGRAVLMLVDVQQ--NGEELRLTGSQVLPLEEEVARTAAGMRIVVKDETPLSTLQSV 1112 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 + + +G+I + + E+EI L I ++ I G+ V Sbjct: 1113 LKRLRP----GRGRIQ-VAVEVDPMTEVEILLPQALMIDASSRAAIKSIPGVVDV 1162 >gi|84683471|ref|ZP_01011374.1| DNA polymerase III, alpha subunit [Maritimibacter alkaliphilus HTCC2654] gi|84668214|gb|EAQ14681.1| DNA polymerase III, alpha subunit [Rhodobacterales bacterium HTCC2654] Length = 1171 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 55/125 (44%), Gaps = 5/125 (4%) Query: 59 EEKPRLLREKKPYIIVVSQE-DKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPL 117 E+ + L ++ V + L+ + V+++ + + M +LRVY+ + Sbjct: 1049 EQNRQFLETGMNVVVTVEATYESEQLKLLARSAAPVDTVVQDAGGM--ALRVYVDSPGVV 1106 Query: 118 REIHKYFEN-RQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGIT 175 + E+ R+ + G + + E+E+ + +P++P+I L+ ++G+ Sbjct: 1107 ATVAGLLESAREQAKGARPGAVSFCLMDPTLPGEVEMDIGAEFPLNPQIKGALKSLSGVV 1166 Query: 176 KVVQV 180 V +V Sbjct: 1167 DVEEV 1171 >gi|163740552|ref|ZP_02147946.1| DNA polymerase III subunit alpha [Phaeobacter gallaeciensis 2.10] gi|161386410|gb|EDQ10785.1| DNA polymerase III subunit alpha [Phaeobacter gallaeciensis 2.10] Length = 1170 Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 5/125 (4%) Query: 59 EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKK-SMEMLDSLRVYLQDRSPL 117 E+ L +I E + + + + V ++ + SLRVY+ S + Sbjct: 1048 EKSREFLETGAKVVIT--AEATMESDQLKLLVRSVGPVDAAIADAGRSSLRVYISQASAV 1105 Query: 118 REIHKYFE-NRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGIT 175 + + E + +G++ + ++E+ L +PI+P+I L+ + G+ Sbjct: 1106 ATVAQVLEDAKSAARNASRGEVYMYLQDPGLPGDVEMDLGQPFPINPQIKGALKSLDGVM 1165 Query: 176 KVVQV 180 V ++ Sbjct: 1166 DVEEI 1170 >gi|163737024|ref|ZP_02144442.1| DNA polymerase III, alpha subunit [Phaeobacter gallaeciensis BS107] gi|161389628|gb|EDQ13979.1| DNA polymerase III, alpha subunit [Phaeobacter gallaeciensis BS107] Length = 1170 Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 5/125 (4%) Query: 59 EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKK-SMEMLDSLRVYLQDRSPL 117 E+ L +I E + + + + V ++ + SLRVY+ S + Sbjct: 1048 EKSREFLETGAKVVIT--AEATMESDQLKLLVRSVGPVDAAIADAGRSSLRVYISQASAV 1105 Query: 118 REIHKYFE-NRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGIT 175 + + E + +G++ + ++E+ L +PI+P+I L+ + G+ Sbjct: 1106 ATVAQVLEDAKSAARNASRGEVYMYLQDPGLPGDVEMDLGQPFPINPQIKGALKSLDGVM 1165 Query: 176 KVVQV 180 V ++ Sbjct: 1166 DVEEI 1170 >gi|126725821|ref|ZP_01741663.1| DNA polymerase III subunit alpha [Rhodobacterales bacterium HTCC2150] gi|126705025|gb|EBA04116.1| DNA polymerase III subunit alpha [Rhodobacterales bacterium HTCC2150] Length = 1170 Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 54/125 (43%), Gaps = 5/125 (4%) Query: 59 EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME-MLDSLRVYLQDRSPL 117 E+ L II V E + + + V ++ LR++++D + Sbjct: 1048 EKTREFLEVGAKVIITV--EATMEADQLKLLARGVSPIDAAVARAGPVGLRIFIEDEEAI 1105 Query: 118 REIHKYFE-NRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGIT 175 + E +++ + +G I L L E+E++L +P++P + ++ I+G++ Sbjct: 1106 APVASLLERSKKESSMGGRGPIHLCLLHPDLPGEVEMSLGAEFPVTPVVKGAIKAISGVS 1165 Query: 176 KVVQV 180 + ++ Sbjct: 1166 TIEEI 1170 >gi|126737384|ref|ZP_01753119.1| DNA polymerase III subunit alpha [Roseobacter sp. SK209-2-6] gi|126721969|gb|EBA18672.1| DNA polymerase III subunit alpha [Roseobacter sp. SK209-2-6] Length = 1170 Score = 53.9 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 57 LEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKK-SMEMLDSLRVYLQDRS 115 LE+ + L +I E + + + + ++ + SLRVYL+D + Sbjct: 1047 LEKAREY-LETGSKVVIT--AEATMESDQLKLLMRSAGPVDAAIADAGRSSLRVYLEDAT 1103 Query: 116 PLREIHKYFE-NRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITG 173 + + + + G I L ++E+ L +PI+P+I L+ + G Sbjct: 1104 AVSTVARVLGDAKSAAKSASPGAIYLYLQDPGLPGDVEMDLGQMFPINPQIKGALKSLEG 1163 Query: 174 ITKVVQV 180 + +V ++ Sbjct: 1164 VMEVEEI 1170 >gi|254477258|ref|ZP_05090644.1| DNA polymerase III, alpha subunit subfamily, putative [Ruegeria sp. R11] gi|214031501|gb|EEB72336.1| DNA polymerase III, alpha subunit subfamily, putative [Ruegeria sp. R11] Length = 1170 Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 52/125 (41%), Gaps = 5/125 (4%) Query: 59 EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKK-SMEMLDSLRVYLQDRSPL 117 E+ L +I E + + + + V ++ + SLRVY+ D + Sbjct: 1048 EKSREFLDTGAKVVIT--AEATMESDQLKLLVRSVGPVDAAIADAGRSSLRVYVSDAKAV 1105 Query: 118 REIHKYFE-NRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGIT 175 + + E ++ +G++ + ++E+ L +PI+P+I L+ + G+ Sbjct: 1106 ATVAQVLEDAKKAARNASRGEVYMYLQDPALPGDVEMDLGQPFPINPQIKGALKSLDGVM 1165 Query: 176 KVVQV 180 V ++ Sbjct: 1166 DVEEI 1170 >gi|85704828|ref|ZP_01035929.1| DNA polymerase III subunit alpha [Roseovarius sp. 217] gi|85670646|gb|EAQ25506.1| DNA polymerase III subunit alpha [Roseovarius sp. 217] Length = 1166 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 47/125 (37%), Gaps = 5/125 (4%) Query: 59 EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK-KSMEMLDSLRVYLQDRSPL 117 E+ L +I E + + + V+ ++ + LR+++ + Sbjct: 1044 EKCREFLETGAQVVIT--AEATMEADQLKLLCRAVQPIDGMVAGAGAVGLRIFVDQPGAI 1101 Query: 118 REIHKYFENRQTQ-NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGIT 175 + + + G I + + E+EI YP++P+I ++ +TG+ Sbjct: 1102 GSVAAVLQGASQSARGARPGPIHFCLMGAGLPGEVEIDSGAEYPVTPQIKGAIKTLTGVV 1161 Query: 176 KVVQV 180 V ++ Sbjct: 1162 MVEEI 1166 >gi|315111546|ref|YP_421932.2| DNA polymerase III subunit alpha [Magnetospirillum magneticum AMB-1] Length = 1154 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 9/118 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL P +I V KL + + + SL++++ + +RV + D S +R++ Sbjct: 1045 LLDAGGPLLIDVDA--KLEEDQLRMTCQRIASLDQEAAKAAAGIRVIISDDSAIRQLADL 1102 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180 + + ++ E+E+ L + +SP+ L I GI +V ++ Sbjct: 1103 INGE----ARGRNLVRIVARADN--REVELGLKSNITLSPKFMGSLRSIPGIAEVEEI 1154 >gi|149201165|ref|ZP_01878140.1| DNA polymerase III subunit alpha [Roseovarius sp. TM1035] gi|149145498|gb|EDM33524.1| DNA polymerase III subunit alpha [Roseovarius sp. TM1035] Length = 1166 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 48/125 (38%), Gaps = 5/125 (4%) Query: 59 EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK-KSMEMLDSLRVYLQDRSPL 117 E+ L +I E L + + V+ ++ + LR+++ + Sbjct: 1044 EKCREFLETGAQVVIT--AEATLEADQLKLLCRAVQPIDGMVAGAGAVGLRIFVDQPGAI 1101 Query: 118 REIHKYFE-NRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGIT 175 + + Q + G I + + E+EI YP++P+I ++ +TG+ Sbjct: 1102 GSVAAVLQGASQAARGARPGPIHFCLMGAGLLGEVEIDSGAEYPVTPQIKGAIKSLTGVV 1161 Query: 176 KVVQV 180 V ++ Sbjct: 1162 MVEEI 1166 >gi|296116516|ref|ZP_06835126.1| DNA polymerase III subunit alpha [Gluconacetobacter hansenii ATCC 23769] gi|295976728|gb|EFG83496.1| DNA polymerase III subunit alpha [Gluconacetobacter hansenii ATCC 23769] Length = 1142 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 8/117 (6%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L + V+ E +L + I V LE+ + + LR++ + I Sbjct: 1032 ILSAGNAVV--VTAELRLDGEALRITASDVMELEQAAADAAAELRIWFDRADAIVPIRDI 1089 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQ 179 + +G+I ++ ++E+TL + Y ++P IA ++ I G+ +V Q Sbjct: 1090 LQGHSG----GRGRI-ILLPSVAETRDVEVTLGERYRVTPRIAQMIKSIEGVGRVEQ 1141 >gi|86136285|ref|ZP_01054864.1| DNA polymerase III subunit alpha [Roseobacter sp. MED193] gi|85827159|gb|EAQ47355.1| DNA polymerase III subunit alpha [Roseobacter sp. MED193] Length = 1170 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 6/127 (4%) Query: 57 LEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME-MLDSLRVYLQDRS 115 LE+ + L +I E + + + + ++ + SLR+YL D + Sbjct: 1047 LEKAREY-LDTGSKVVIT--AEATMESDQLKLLMRSAGPVDAAVADAGRSSLRIYLDDAA 1103 Query: 116 PLREIHKYFE-NRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITG 173 + + E ++ G+I L S ++E+ L +PI+P+I L+ + G Sbjct: 1104 AISTVATVLEDAKKAARSASPGEIYLYLQDSDLPGDVEMNLGAMFPINPQIKGALKSLEG 1163 Query: 174 ITKVVQV 180 + +V ++ Sbjct: 1164 VMEVEEI 1170 >gi|82946509|dbj|BAE51373.1| DNA polymerase III, alpha subunit [Magnetospirillum magneticum AMB-1] Length = 1118 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 9/118 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL P +I V KL + + + SL++++ + +RV + D S +R++ Sbjct: 1009 LLDAGGPLLIDVDA--KLEEDQLRMTCQRIASLDQEAAKAAAGIRVIISDDSAIRQLADL 1066 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180 + + ++ E+E+ L + +SP+ L I GI +V ++ Sbjct: 1067 INGE----ARGRNLVRIVARADN--REVELGLKSNITLSPKFMGSLRSIPGIAEVEEI 1118 >gi|83954740|ref|ZP_00963451.1| DNA polymerase III subunit alpha [Sulfitobacter sp. NAS-14.1] gi|83841024|gb|EAP80195.1| DNA polymerase III subunit alpha [Sulfitobacter sp. NAS-14.1] Length = 1177 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 54/119 (45%), Gaps = 5/119 (4%) Query: 65 LREKKPYIIVVSQE-DKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 L +++V + L+ ++ ++++ + + M LR+++ D ++ + Sbjct: 1061 LETGSKVVVMVEATMESDQLKLLGRSVVPIDTVVEDAGNM--GLRIFVDDAGAIQAVADV 1118 Query: 124 FENRQTQNYDK-QGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180 ++ +G + L + E+E+ L YP++P+I + +TG+ +V ++ Sbjct: 1119 LAGARSAARSAGKGPVQLCLMDPTLPGEVEVDLCAEYPVTPKIKGAIRSLTGVMEVEEI 1177 >gi|83943739|ref|ZP_00956197.1| DNA polymerase III subunit alpha [Sulfitobacter sp. EE-36] gi|83845419|gb|EAP83298.1| DNA polymerase III subunit alpha [Sulfitobacter sp. EE-36] Length = 1177 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 54/119 (45%), Gaps = 5/119 (4%) Query: 65 LREKKPYIIVVSQE-DKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 L +++V + L+ ++ ++++ + + M LR+++ D ++ + Sbjct: 1061 LETGSKVVVMVEATMESDQLKLLGRSVVPIDTVVEDAGNM--GLRIFVDDAGAIQAVADV 1118 Query: 124 FENRQTQNYDK-QGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180 ++ +G + L + E+E+ L YP++P+I + +TG+ +V ++ Sbjct: 1119 LAGARSAARSAGKGPVQLCLMDPTLPGEVEVDLCAEYPVTPKIKGAIRSLTGVMEVEEI 1177 >gi|254436926|ref|ZP_05050420.1| DNA polymerase III, alpha subunit subfamily, putative [Octadecabacter antarcticus 307] gi|198252372|gb|EDY76686.1| DNA polymerase III, alpha subunit subfamily, putative [Octadecabacter antarcticus 307] Length = 1172 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 4/118 (3%) Query: 65 LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLE-KKSMEMLDSLRVYLQDRSPLREIHKY 123 L +I V E + ++ + V + + LRV+L D + + + Sbjct: 1057 LETGNQIVIQV--EATMEAEQLKLLGRSVMLADMAVANAGSSGLRVFLGDPAAISTVSDI 1114 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180 + N + + EI++ L+ +PI+P+I L + G+ +V ++ Sbjct: 1115 LQGAIRDNVKGGRGPVMFTIDDIELGEIDVELETQFPINPQIKGALRSLGGVIEVQEI 1172 >gi|149914036|ref|ZP_01902568.1| DNA polymerase III subunit alpha [Roseobacter sp. AzwK-3b] gi|149812320|gb|EDM72151.1| DNA polymerase III subunit alpha [Roseobacter sp. AzwK-3b] Length = 1167 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 52/126 (41%), Gaps = 6/126 (4%) Query: 55 QQLEEEKPRLLREKKPYIIVVSQE-DKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQD 113 + LE+ + L +I V + L+ + ++ + + M LR++++ Sbjct: 1042 ETLEKSRDH-LETGAQVVITVEATMESDQLKLLGRAVSPIDGVVADAGAM--GLRIFVET 1098 Query: 114 RSPLREIHKYFENRQTQ-NYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHI 171 + + + +N T +G I + EIEI YP++P+I ++ + Sbjct: 1099 QEAIPSVASVLQNAVTSVKSGGRGPIRFCLMGPSLPGEIEIDTGQDYPVTPQIKGAIKSL 1158 Query: 172 TGITKV 177 +G+ V Sbjct: 1159 SGVLAV 1164 >gi|259417587|ref|ZP_05741506.1| DNA polymerase III subunit alpha [Silicibacter sp. TrichCH4B] gi|259346493|gb|EEW58307.1| DNA polymerase III subunit alpha [Silicibacter sp. TrichCH4B] Length = 1166 Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 57 LEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKK-SMEMLDSLRVYLQDRS 115 LE+ + L +I E + + + + ++ + SLRVYL+ S Sbjct: 1043 LEKSRDH-LETGSKVVIT--AEATMESDQLKLLMRLAGPVDSAIADAGRSSLRVYLESAS 1099 Query: 116 PLREIHKYFE-NRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITG 173 + + E ++ G+I + ++E+ L +PI+P+I L+ + G Sbjct: 1100 AVATVATVLEDAKKAAKNASPGEIYVYLQDPNLPGDVEMDLGQLFPINPQIKGALKSLEG 1159 Query: 174 ITKVVQV 180 + V ++ Sbjct: 1160 VMDVEEI 1166 >gi|99080341|ref|YP_612495.1| DNA polymerase III subunit alpha [Ruegeria sp. TM1040] gi|99036621|gb|ABF63233.1| DNA polymerase III alpha subunit [Ruegeria sp. TM1040] Length = 1166 Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 57 LEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKK-SMEMLDSLRVYLQDRS 115 LE+ + L +I E + + + + ++ + SLRVYL+ S Sbjct: 1043 LEKSRDH-LETGSKVVIT--AEATMESDQLKLLMRSAGPVDSAIADAGRSSLRVYLESAS 1099 Query: 116 PLREIHKYFE-NRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITG 173 + + E ++ G+I + ++E+ L +PI+P+I L+ + G Sbjct: 1100 AVATVATVLEDAKKAAKNASPGEIYVYLQDPALPGDVEMDLGQLFPINPQIKGALKSLEG 1159 Query: 174 ITKVVQV 180 + V ++ Sbjct: 1160 VMDVEEI 1166 >gi|260432607|ref|ZP_05786578.1| DNA polymerase III subunit alpha [Silicibacter lacuscaerulensis ITI-1157] gi|260416435|gb|EEX09694.1| DNA polymerase III subunit alpha [Silicibacter lacuscaerulensis ITI-1157] Length = 1166 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 51/129 (39%), Gaps = 6/129 (4%) Query: 55 QQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME-MLDSLRVYLQD 113 + LE+ + L ++ E + + + V + E LR+++ Sbjct: 1041 ETLEKSREY-LETGAQVVLT--AEATMEADQLKLLARSVGPADSVVAEAGATGLRIFVDQ 1097 Query: 114 RSPLREIHKYFENRQTQNYDK-QGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHI 171 + + + ++ + +G + L + E+E+ L +PI+P+I ++ + Sbjct: 1098 PQVVSTVARVLQDAAGAARNAAKGPVHLCLMDPGLPGEVEMDLGQDFPINPQIKGAIKSL 1157 Query: 172 TGITKVVQV 180 G+ V +V Sbjct: 1158 DGVMDVQEV 1166 >gi|260425354|ref|ZP_05779334.1| DNA polymerase III subunit alpha [Citreicella sp. SE45] gi|260423294|gb|EEX16544.1| DNA polymerase III subunit alpha [Citreicella sp. SE45] Length = 1177 Score = 51.2 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 5/122 (4%) Query: 59 EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDS-LRVYLQDRSPL 117 E+ LL ++ V E + + + +E + S LR++++D + Sbjct: 1055 EKSRDLLETGSKVVVTV--EATMESDQLKLLARSFGPVETVVADAGASGLRIFIEDPGTV 1112 Query: 118 REIHKYFENRQTQNYD-KQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGIT 175 ++ Q +G + L + E+E+ L +P++PEI ++ + G+ Sbjct: 1113 AQVASVLSRAAEQMPKAGRGPVRLCLSAAGLPGEVEMDLRQEFPVTPEIKGAVKSLDGVL 1172 Query: 176 KV 177 V Sbjct: 1173 AV 1174 >gi|84500130|ref|ZP_00998396.1| DNA polymerase III, alpha subunit [Oceanicola batsensis HTCC2597] gi|84392064|gb|EAQ04332.1| DNA polymerase III, alpha subunit [Oceanicola batsensis HTCC2597] Length = 1134 Score = 51.2 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 47/119 (39%), Gaps = 5/119 (4%) Query: 65 LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK-KSMEMLDSLRVYLQDRSPLREIHKY 123 L ++ V E + + + + L+ + L+++++ + + + Sbjct: 1018 LDPGSMVVVTV--EATMESDQLKLLARGIAPLDTIVADAGSVGLKIFVEAAEAIPAVAEV 1075 Query: 124 FENRQTQNYD-KQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180 + Q +G I + + E+EI +P++P+I ++ + G+ V ++ Sbjct: 1076 LTSAQEAAARVGRGPISFCLMDAGLPGEVEIDAGAEFPVTPQIKGAIKSLNGVMAVEEI 1134 >gi|254449414|ref|ZP_05062851.1| DNA polymerase III, alpha subunit [Octadecabacter antarcticus 238] gi|198263820|gb|EDY88090.1| DNA polymerase III, alpha subunit [Octadecabacter antarcticus 238] Length = 1168 Score = 50.8 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 65 LREKKPYIIVVSQE-DKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 L +I V + L+ ++ + + + LRV+L D + + + Sbjct: 1053 LETGNQIVIQVEATMEAEQLKLLGRSVMLADMVVANA--GSSGLRVFLGDVAAISTVSDI 1110 Query: 124 FENRQTQNYDK-QGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180 + N +G + + EI++ L+ +P++P+I L + G+ +V ++ Sbjct: 1111 LQGAIRDNVKGGRGPVTFT-IDDIELGEIDVELETQFPVNPQIKGALRSLGGVIEVQEI 1168 >gi|255262260|ref|ZP_05341602.1| DNA polymerase III subunit alpha [Thalassiobium sp. R2A62] gi|255104595|gb|EET47269.1| DNA polymerase III subunit alpha [Thalassiobium sp. R2A62] Length = 1169 Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 6/122 (4%) Query: 60 EKPRL-LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME-MLDSLRVYLQDRSPL 117 EK R L ++ V E + + + V ++ E +VY+ D + + Sbjct: 1047 EKARDHLETGAQVVVTV--EATMESDQLKLLGRSVAPIDIAVAEAGATGFKVYVDDPAAI 1104 Query: 118 REIHKYFENRQTQNYDKQ-GKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGIT 175 + E +T G I + + E+E+ L +P+SP+I L+ + G+ Sbjct: 1105 ASVATVLEEVKTATQKANKGPILFCLMNADLPGEVEMDLGQDFPVSPQIKGALKSLGGVI 1164 Query: 176 KV 177 V Sbjct: 1165 TV 1166 >gi|77465552|ref|YP_355055.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides 2.4.1] gi|77389970|gb|ABA81154.1| DNA polymerase III alpha chain [Rhodobacter sphaeroides 2.4.1] Length = 1163 Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 33/179 (18%) Query: 10 NNRKGKKKPDGNH-DFLFLED---CYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLL 65 ++R+ KK GN F+ L D Y+ + F + EQ + LL Sbjct: 1010 SSRQEKKSAKGNRFAFVQLSDPTGLYECTV------------FSDVLEQAR------DLL 1051 Query: 66 REKKPYIIVVSQEDKLSLQRDSIRLLW--VESLEKKSME-MLDSLRVYLQDRSPLREIHK 122 ++ V +L+ DS++LL V ++ + + SLRV+L Sbjct: 1052 EPGGHVVLTVEA----TLEGDSLKLLARGVSPIDAVAADAGAMSLRVHL---DRAEAAAS 1104 Query: 123 YFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180 + + + G EI+I L + +SP+I L + G+ V ++ Sbjct: 1105 VAALLARAQGRARAPVRICVRDPSGGQEIDIELGQDFAVSPQIRSALRAVPGVEMVEEI 1163 >gi|126463991|ref|YP_001045104.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides ATCC 17029] gi|126105802|gb|ABN78332.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides ATCC 17029] Length = 1163 Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 33/179 (18%) Query: 10 NNRKGKKKPDGNH-DFLFLED---CYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLL 65 ++R+ KK GN F+ L D Y+ + F + EQ + LL Sbjct: 1010 SSRQEKKSAKGNRFAFVQLSDPTGLYECTV------------FSDVLEQAR------DLL 1051 Query: 66 REKKPYIIVVSQEDKLSLQRDSIRLLW--VESLEKKSME-MLDSLRVYLQDRSPLREIHK 122 ++ V +L+ DS++LL V ++ + + SLRV+L Sbjct: 1052 EPGGHVVLTVEA----TLEGDSLKLLARGVSPIDAVAADAGAMSLRVHL---DRAEAAAS 1104 Query: 123 YFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180 + + + G EI+I L + +SP+I L + G+ V ++ Sbjct: 1105 VAALLARAQGRARAPVRICVRDPSGGQEIDIELGQDFAVSPQIRSALRAVPGVEMVEEI 1163 >gi|221369558|ref|YP_002520654.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides KD131] gi|221162610|gb|ACM03581.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides KD131] Length = 1163 Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 33/179 (18%) Query: 10 NNRKGKKKPDGNH-DFLFLED---CYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLL 65 ++R+ KK GN F+ L D Y+ + F + EQ + LL Sbjct: 1010 SSRQEKKSAKGNRFAFVQLSDPTGLYECTV------------FSDVLEQAR------DLL 1051 Query: 66 REKKPYIIVVSQEDKLSLQRDSIRLLW--VESLEKKSME-MLDSLRVYLQDRSPLREIHK 122 ++ V +L+ DS++LL V ++ + + SLRV+L Sbjct: 1052 EPGGHVVLTVEA----TLEGDSLKLLARGVSPIDAVAADAGAMSLRVHL---DRAEAAAS 1104 Query: 123 YFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180 + + + G EI+I L + +SP+I L + G+ V ++ Sbjct: 1105 VAALLARAQGRARAPVRICVRDPSGGQEIDIELGQDFAVSPQIRSALRAVPGVEMVEEI 1163 >gi|146279950|ref|YP_001170108.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides ATCC 17025] gi|145558191|gb|ABP72803.1| hypothetical protein Rsph17025_3949 [Rhodobacter sphaeroides ATCC 17025] Length = 1163 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 33/179 (18%) Query: 10 NNRKGKKKPDGNH-DFLFLED---CYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLL 65 ++R+ KK GN F+ L D Y+ + F + EQ + LL Sbjct: 1010 SSRQEKKSAKGNRFAFVQLSDPTGLYECTV------------FSDVLEQAR------DLL 1051 Query: 66 REKKPYIIVVSQEDKLSLQRDSIRLLW--VESLEKKSME-MLDSLRVYLQDRSPLREIHK 122 ++ V +L+ DS++LL V ++ + + SLRV+L Sbjct: 1052 EPGGHVVLTVEA----TLEGDSLKLLARGVAPIDAVAADAGAMSLRVHL---DRAEAAAS 1104 Query: 123 YFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180 + + + G EI+I L + +SP+I L + G+ V ++ Sbjct: 1105 VAALLARAQGRARAPVRICVRDPSGGQEIDIELGQDFAVSPQIRSALRAVPGVEMVEEI 1163 >gi|56695561|ref|YP_165911.1| DNA polymerase III subunit alpha [Ruegeria pomeroyi DSS-3] gi|56677298|gb|AAV93964.1| DNA polymerase III, alpha subunit [Ruegeria pomeroyi DSS-3] Length = 1187 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 5/122 (4%) Query: 59 EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME-MLDSLRVYLQDRSPL 117 E+ L ++ E + + + V + E LRV++ + + Sbjct: 1065 EKSREFLETGSHVVLT--AEATMEADQLKLLARSVGPADAVVAEAGATGLRVFMDNAGAV 1122 Query: 118 REIHKYFENRQTQNYDKQ-GKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGIT 175 + + G + L + E+E+ L +P++P+I L+ + G+ Sbjct: 1123 ETVAHILAEAAQAARNAARGPVQLCLMDPGLPGEVEMDLGQEFPLNPQIKGALKSLDGVV 1182 Query: 176 KV 177 V Sbjct: 1183 DV 1184 >gi|167646770|ref|YP_001684433.1| DNA polymerase III subunit alpha [Caulobacter sp. K31] gi|167349200|gb|ABZ71935.1| DNA polymerase III, alpha subunit [Caulobacter sp. K31] Length = 1143 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 8/113 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQ-DRSPLREIHK 122 +L K I V + + E +EK M+ LR++L + + + + Sbjct: 1031 VLEPGKAVAIKVRAKAR--DGEVRFFGDDAEPIEKAIENMVAGLRMHLSPSATEIDALRR 1088 Query: 123 YFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGI 174 E + G++ LI G EIE+ L Y + + L+ G+ Sbjct: 1089 RLEAAASPRG---GEVSLIAAL-GGGREIEMKLPGRYTLDAALRGALKTAPGV 1137 >gi|16126169|ref|NP_420733.1| DNA polymerase III subunit alpha [Caulobacter crescentus CB15] gi|221234940|ref|YP_002517376.1| DNA polymerase III subunit alpha [Caulobacter crescentus NA1000] gi|68565608|sp|Q9A700|DPO3A_CAUCR RecName: Full=DNA polymerase III subunit alpha gi|239977223|sp|B8GWS6|DPO3A_CAUCN RecName: Full=DNA polymerase III subunit alpha gi|13423381|gb|AAK23901.1| DNA polymerase III, alpha subunit [Caulobacter crescentus CB15] gi|220964112|gb|ACL95468.1| DNA polymerase III alpha subunit [Caulobacter crescentus NA1000] Length = 1143 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 8/113 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L K I V + + E +EK ++ LRV+L SP Sbjct: 1031 VLEPGKAVAIKVRAKAR--DGEVRFFGDDAEPIEKAVENVVAGLRVHL---SPSAAEIDA 1085 Query: 124 FENRQTQ-NYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGI 174 + R K G++ + G EIE+ L Y + + L+ G+ Sbjct: 1086 LKRRLEPAQAQKGGEVTFVAAI-GGGREIELRLPGRYTLDAALRGALKTAPGV 1137 >gi|110681190|ref|YP_684197.1| DNA polymerase III subunit alpha [Roseobacter denitrificans OCh 114] gi|109457306|gb|ABG33511.1| DNA polymerase III, alpha subunit [Roseobacter denitrificans OCh 114] Length = 1183 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 57 LEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLD-SLRVYLQDRS 115 LE + L ++ V E + + + V ++ + ++ L+V++ Sbjct: 1060 LEAARDY-LEAGSKVVVTV--EATMESDQLKLLGRSVGPIDAATADVSSMGLKVFVDAPE 1116 Query: 116 PLREIHKYFENR-QTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITG 173 + + E + QG + L + + E+E+ L + ++P+I ++ ++G Sbjct: 1117 AVAAVATVLEGAGRAVKGRAQGPVMLCLMGADLPGEVEVELGQDFIVNPQIKGAIKSLSG 1176 Query: 174 ITKVVQV 180 + +V ++ Sbjct: 1177 VLEVEEI 1183 >gi|114770394|ref|ZP_01447932.1| DNA polymerase III subunit alpha [alpha proteobacterium HTCC2255] gi|114549231|gb|EAU52114.1| DNA polymerase III subunit alpha [alpha proteobacterium HTCC2255] Length = 1128 Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 53/117 (45%), Gaps = 9/117 (7%) Query: 68 KKPYIIVVSQEDKLSLQRDSIRLLWVESLE---KKSMEMLDSLRVYLQDRSPLREIHKYF 124 K + V E + + + + + ++ + + M L++++ + ++ I Sbjct: 1015 GKNVTLTV--EANVDADQLKLLVRSAQPVDVSVQDAAAM--GLKIFVSNEEAVKSIATRL 1070 Query: 125 -ENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQ 179 E + G + L+ + E+EI L + YP++P+I ++H+ G+ +V++ Sbjct: 1071 SEISKDAPQRALGPVHLVLSHPELPGEVEIVLKNSYPLNPQIKGAIKHVDGVLEVME 1127 >gi|163795645|ref|ZP_02189611.1| DNA polymerase III, alpha subunit [alpha proteobacterium BAL199] gi|159179244|gb|EDP63777.1| DNA polymerase III, alpha subunit [alpha proteobacterium BAL199] Length = 1162 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 47/112 (41%), Gaps = 9/112 (8%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL P + V + ++ + +E L+K + L ++++D L Sbjct: 1053 LLDAGIPLL--VKADARIEDDAMRLLASRMEPLDKAVEQTAAGLEIHVRDTRALEP---- 1106 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGI 174 + Q +G+I ++ G+ ++ I L + Y +S ++ ++ I GI Sbjct: 1107 LRSLIAQEGRGRGRIRVVV--PTGEGDVGIVLPEAYKVSSQLRGAVKAIPGI 1156 >gi|312114721|ref|YP_004012317.1| DNA polymerase III subunit alpha [Rhodomicrobium vannielii ATCC 17100] gi|311219850|gb|ADP71218.1| DNA polymerase III, alpha subunit [Rhodomicrobium vannielii ATCC 17100] Length = 1151 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 49/114 (42%), Gaps = 9/114 (7%) Query: 65 LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYF 124 L K ++ V E + +R+ V++L++ ++ + + +R + E+ K+ Sbjct: 1045 LEAGKNVLVHVEGEA--DGEAIKVRVQAVQALDEVLGKITKQVSITATERLQVAELVKHL 1102 Query: 125 ENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177 + ++ L+ + + +E L D++ I+ L+ + G+ +V Sbjct: 1103 ------GREGGIQVNLVVQIPEAQKAVEFKLGDNFSITARQLATLKTLPGVLQV 1150 >gi|295689601|ref|YP_003593294.1| DNA polymerase III subunit alpha [Caulobacter segnis ATCC 21756] gi|295431504|gb|ADG10676.1| DNA polymerase III, alpha subunit [Caulobacter segnis ATCC 21756] Length = 1143 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 8/113 (7%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQ-DRSPLREIHK 122 +L K I V + + E +EK ++ LRV+L + + + + Sbjct: 1031 VLEPGKAVAIKVRAKAR--DGEVRFFGDDAEPIEKAIENVVAGLRVHLSPSAAEIEALKR 1088 Query: 123 YFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGI 174 E Q+Q G++ + S G EIE+ L Y + + L+ G+ Sbjct: 1089 RLEPAQSQKG---GEVTFVAAISGG-REIELRLPGRYSLDASLRGALKTAPGV 1137 >gi|114765486|ref|ZP_01444596.1| DNA polymerase III subunit alpha [Pelagibaca bermudensis HTCC2601] gi|114542196|gb|EAU45227.1| DNA polymerase III subunit alpha [Roseovarius sp. HTCC2601] Length = 1174 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 59 EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDS-LRVYLQDRSPL 117 E+ LL ++ V E + + + +E+ + + +++Y+++ + Sbjct: 1052 EKARDLLETGTKVVVTV--EATMESDQLKLLARSFGPVEQVVADAGAAGMKIYIENPDTV 1109 Query: 118 REIHKYFE-NRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGIT 175 ++ + +G + L F S E+E+ L +P++PEI ++ + G+ Sbjct: 1110 AQVASVLGRAAEQMPRAGRGPVRLCFAGSGLPGEVEMDLRQEFPVTPEIKGAVKSLDGVM 1169 Query: 176 KV 177 V Sbjct: 1170 AV 1171 >gi|310816591|ref|YP_003964555.1| DNA polymerase III subunit alpha [Ketogulonicigenium vulgare Y25] gi|308755326|gb|ADO43255.1| DNA polymerase III subunit alpha [Ketogulonicigenium vulgare Y25] Length = 1163 Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 9/127 (7%) Query: 57 LEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSP 116 LE +P LL I+ E L + + ++ + + R+Y+ Sbjct: 1043 LEAARP-LLEAGTQVIL--QAEATLEADQLKLLARSFSAVGEMDTGVE-GYRIYIDREEA 1098 Query: 117 LREIHKYFENRQTQNYDK-QGKIGL-IFLRSQGKIEIEITLDH-YPISPEIAFDLEHITG 173 L ++ EN +G I I + G E++I YP++P+I L + G Sbjct: 1099 LAQVSSVLENAIAAKVRAPRGHIAFEIIVPDVG--EVKIEAPRTYPLNPQIRAALRAVNG 1156 Query: 174 ITKVVQV 180 + +V++V Sbjct: 1157 VQEVIEV 1163 >gi|58038565|ref|YP_190529.1| DNA polymerase III subunit alpha [Gluconobacter oxydans 621H] gi|58000979|gb|AAW59873.1| DNA polymerase III alpha subunit [Gluconobacter oxydans 621H] Length = 1140 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 8/118 (6%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL + I+V+ E K+ I V LE + +RV+L++ + L ++ Sbjct: 1030 LLVAGQA--ILVTAELKVDGDALRITAQNVMDLEVAAAAERSEIRVWLKEDASLPDLASL 1087 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180 E Q G++ L+ + + ++EI++ HY ++P +A L + G+ K +QV Sbjct: 1088 LEEVQG----GLGRVKLLPSVEETQ-DVEISIPGHYRVTPRLAERLRTLRGVEKALQV 1140 >gi|329115626|ref|ZP_08244348.1| DNA polymerase III subunit alpha [Acetobacter pomorum DM001] gi|326695054|gb|EGE46773.1| DNA polymerase III subunit alpha [Acetobacter pomorum DM001] Length = 1139 Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 48/109 (44%), Gaps = 6/109 (5%) Query: 73 IVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNY 132 I+V+ + KL + + + LE + + +RV+L+ L + Sbjct: 1036 ILVTADLKLEGEALRLTATDIVDLEAAAAQGQSEMRVWLEKPDAL----PDLQAILEPQK 1091 Query: 133 DKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180 G++ L+ + ++E+ L Y ++P + L ++G+++V QV Sbjct: 1092 GGAGRVVLLPGVADSC-DVEVRLRGRYKVTPVLGQRLRTLSGVSRVEQV 1139 >gi|294676350|ref|YP_003576965.1| DNA polymerase III subunit alpha [Rhodobacter capsulatus SB 1003] gi|294475170|gb|ADE84558.1| DNA polymerase III, alpha subunit [Rhodobacter capsulatus SB 1003] Length = 1169 Score = 47.7 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 15/120 (12%), Positives = 45/120 (37%), Gaps = 6/120 (5%) Query: 65 LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEML--DSLRVYLQDRSPLREIHK 122 L + ++ V + + + + ++ + + L ++L+ + + Sbjct: 1052 LEPGQAVVLTVKVD--VEGETVKMLCQTAAPIDTVASDAGAGSGLLIHLETPEAVSSVAA 1109 Query: 123 YFEN-RQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180 FE +G++ + + +IT P++P++ L + G+ +V +V Sbjct: 1110 LFERIAAEGRVKSRGQVTFSVFDPEKRRRYQITAGRELPVNPQVKGALRSLRGVVQVEEV 1169 >gi|163732864|ref|ZP_02140309.1| DNA polymerase III, alpha subunit [Roseobacter litoralis Och 149] gi|161394224|gb|EDQ18548.1| DNA polymerase III, alpha subunit [Roseobacter litoralis Och 149] Length = 1138 Score = 47.7 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 50/119 (42%), Gaps = 5/119 (4%) Query: 65 LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKY 123 L I V+ E + + + V ++ + ++ L+V++ + + Sbjct: 1022 LEAGSK--IFVTVEATMESDQLKLLGRSVGPIDAATADVSSMGLKVFVDAPEAVAAVATV 1079 Query: 124 FENR-QTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180 E + QG + L + + E+E+ L + ++P+I ++ ++G+ +V ++ Sbjct: 1080 LEGAGRAVKGRAQGPVMLCLMGADLPGEVEVELGQDFIVNPQIKGAIKSLSGVLEVEEI 1138 >gi|89070902|ref|ZP_01158137.1| DNA polymerase III subunit alpha [Oceanicola granulosus HTCC2516] gi|89043541|gb|EAR49752.1| DNA polymerase III subunit alpha [Oceanicola granulosus HTCC2516] Length = 1166 Score = 47.7 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 5/119 (4%) Query: 65 LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLE-KKSMEMLDSLRVYLQDRSPLREIHKY 123 L ++ V E + + + V ++ + L+V+++ + + Sbjct: 1050 LESGSQVVLSV--EATMEADQLKLLARSVSPIDVAVADAGSSGLKVFVEHADAINAVASV 1107 Query: 124 FENRQTQNYDKQGKIGLIFLRS-QGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180 E L L E+E+ L +P++P+I L + GI +V +V Sbjct: 1108 LEGAGRDGARGGRGPILFCLMDPDLPGEVELDLGAEFPVNPQIKGALRSLPGILEVQEV 1166 >gi|258543019|ref|YP_003188452.1| DNA polymerase III subunit alpha [Acetobacter pasteurianus IFO 3283-01] gi|256634097|dbj|BAI00073.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO 3283-01] gi|256637157|dbj|BAI03126.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO 3283-03] gi|256640209|dbj|BAI06171.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO 3283-07] gi|256643266|dbj|BAI09221.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO 3283-22] gi|256646321|dbj|BAI12269.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO 3283-26] gi|256649374|dbj|BAI15315.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO 3283-32] gi|256652360|dbj|BAI18294.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655418|dbj|BAI21345.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO 3283-12] Length = 1139 Score = 47.7 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 6/109 (5%) Query: 73 IVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNY 132 I+V+ + KL + + + LE + + +RV+L+ L + Sbjct: 1036 ILVTADLKLEGEALRLTATDIVDLEAAAAQGQSEMRVWLEKPDAL----PDLQAILEPQK 1091 Query: 133 DKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180 G+I L+ + ++E+ L Y ++P + L ++G+++V QV Sbjct: 1092 GGAGRIVLLPGVADSC-DVEVRLRGRYKVTPVLGQRLRTLSGVSRVEQV 1139 >gi|114327944|ref|YP_745101.1| DNA polymerase III subunit alpha [Granulibacter bethesdensis CGDNIH1] gi|114316118|gb|ABI62178.1| DNA polymerase III alpha subunit [Granulibacter bethesdensis CGDNIH1] Length = 1143 Score = 47.7 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 6/110 (5%) Query: 73 IVVSQEDKLSLQR-DSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131 ++V+ + K + I + L+ + +RV+L+D + + +I + Sbjct: 1038 VLVTADIKAEGEDSIRITAQDIMPLDDAAGGTAGMMRVWLKDNADIGQIRAVL---SRPD 1094 Query: 132 YDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180 +G + LI R E+EI L + ++P + L+ I G+ +V +V Sbjct: 1095 TKGKGHVVLIP-RLNEDQEMEIELPGGFNVTPRLGQALKLIPGVERVEEV 1143 >gi|254512245|ref|ZP_05124312.1| putative DNA polymerase III alpha subunit subfamily [Rhodobacteraceae bacterium KLH11] gi|221535956|gb|EEE38944.1| putative DNA polymerase III alpha subunit subfamily [Rhodobacteraceae bacterium KLH11] Length = 1166 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 51/125 (40%), Gaps = 5/125 (4%) Query: 59 EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME-MLDSLRVYLQDRSPL 117 E+ L ++ E + + + V ++ E LRV+++D + L Sbjct: 1044 EKSREFLETGAQVVLT--AEATMEADQLKLLGRSVGPVDAVVAEAGATGLRVFVEDAAVL 1101 Query: 118 REIHKYFENRQTQ-NYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGIT 175 + E +T +G + + E+E+ L Y I+P+I L+ + GI+ Sbjct: 1102 PTMATVLEEAETSVKRAAKGPVYVCLFDPGLPGEVEMDLGRNYAINPQIKGALKSLEGIS 1161 Query: 176 KVVQV 180 ++ ++ Sbjct: 1162 EIEEI 1166 >gi|294084089|ref|YP_003550847.1| DNA polymerase III subunit alpha [Candidatus Puniceispirillum marinum IMCC1322] gi|292663662|gb|ADE38763.1| DNA polymerase III, alpha subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 1153 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 46/114 (40%), Gaps = 7/114 (6%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL + KP + VS K+ + V+ L+ + ++++D PL Sbjct: 1044 LLNDDKPLL--VSANLKVEENGPRLLAARVQLLDDAVAAWHGGVGLWIRDDKPLE----Q 1097 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 ++ + + ++ L F + + + + +S E+ +L I G+ +V Sbjct: 1098 LKSALRDDGPGKAEVKLHFTVDGHDVRVALA-GRFKLSGELRQNLRRIPGVLEV 1150 >gi|148261382|ref|YP_001235509.1| DNA polymerase III subunit alpha [Acidiphilium cryptum JF-5] gi|146403063|gb|ABQ31590.1| DNA polymerase III, alpha subunit [Acidiphilium cryptum JF-5] Length = 1139 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 8/118 (6%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL E +++V+ + +L + + + VE L+K + LR+ ++ R L I Sbjct: 1029 LLAEG--AMLLVTADLRLDGESLRVTAVDVEPLDKAAANAGAGLRITVEGREALGSIRAL 1086 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180 E + +G++ L G ++I L + +SP +A ++ I G+ +V ++ Sbjct: 1087 LE----REGRGKGRVLLAPRIDTGAR-LDIALPGGFNVSPRLAQAMKMIRGVAEVAEL 1139 >gi|126733665|ref|ZP_01749412.1| DNA polymerase III subunit alpha [Roseobacter sp. CCS2] gi|126716531|gb|EBA13395.1| DNA polymerase III subunit alpha [Roseobacter sp. CCS2] Length = 1165 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 46/124 (37%), Gaps = 6/124 (4%) Query: 57 LEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDS-LRVYLQDRS 115 LE + L ++ E + + + V ++ + + LRV++ Sbjct: 1042 LEASREY-LETGSQVVL--QCEATMEADQLKLLGRSVSPVDAVVADAGGAGLRVFIDGPE 1098 Query: 116 PLREIHKYFENRQTQNYD-KQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITG 173 + + N +G + + E+E+ L + +P++P+I + + G Sbjct: 1099 VIGSVQSVLANATGGAVRAGRGPVYFCLMHDDLPGEVELDLGEEFPVNPQIKGAIRSLGG 1158 Query: 174 ITKV 177 + +V Sbjct: 1159 VIEV 1162 >gi|197105245|ref|YP_002130622.1| DNA polymerase III, alpha subunit [Phenylobacterium zucineum HLK1] gi|196478665|gb|ACG78193.1| DNA polymerase III, alpha subunit [Phenylobacterium zucineum HLK1] Length = 1148 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 6/113 (5%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL + ++ V K S VE +EK ++ LRV++ +P + Sbjct: 1036 LLEPGRAVVLKVRA--KASEGEVRFFGDDVEPVEKAIENVVAGLRVHV---APRSAEIEA 1090 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGIT 175 + R + +G ++ G E+E+ L + + + L+ G+ Sbjct: 1091 LKRRLEGVTNTRGGEVILVAGLDGGREVELKLPGRFTLDGAVRGALKTAPGVV 1143 >gi|302383614|ref|YP_003819437.1| DNA polymerase III subunit alpha [Brevundimonas subvibrioides ATCC 15264] gi|302194242|gb|ADL01814.1| DNA polymerase III, alpha subunit [Brevundimonas subvibrioides ATCC 15264] Length = 1162 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 5/113 (4%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL ++ V K S L+ + LRV++ R+ + Sbjct: 1049 LLEVGSALMVRVRA--KSSDGEVRFFGDDCSRLDALVDDSTVGLRVHVSARTTDPAAIQA 1106 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGIT 175 R G+I LI G+ E+E+ L Y + + L+ G+ Sbjct: 1107 RLARALAQGKG-GEITLIASLD-GRREVEMRLPGRYRLDGALRGALKSAPGVL 1157 >gi|126728427|ref|ZP_01744243.1| DNA polymerase III subunit alpha [Sagittula stellata E-37] gi|126711392|gb|EBA10442.1| DNA polymerase III subunit alpha [Sagittula stellata E-37] Length = 1166 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 50/126 (39%), Gaps = 6/126 (4%) Query: 55 QQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDS-LRVYLQD 113 + LE+ + L ++ V E + + + V ++ + + S +R+++ Sbjct: 1041 ETLEKSREH-LETGSKVVVTV--EATMESDQLKLLGRAVMPVDAAAAQGGPSGMRIFVDT 1097 Query: 114 RSPLREIHKYFENRQTQNYDK-QGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHI 171 L +I Q + I L E+E+ L + +P++PEI ++ + Sbjct: 1098 EMALSQIASVLGRAAEQLPKAPRAPIVLRLAAPGLPGEVEMDLSERFPVTPEIKGAVKSL 1157 Query: 172 TGITKV 177 G+ V Sbjct: 1158 DGVLAV 1163 >gi|159045497|ref|YP_001534291.1| DNA polymerase III subunit alpha [Dinoroseobacter shibae DFL 12] gi|157913257|gb|ABV94690.1| DNA polymerase III subunit alpha [Dinoroseobacter shibae DFL 12] Length = 1164 Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 8/124 (6%) Query: 60 EKPRL-LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDS---LRVYLQDRS 115 EK R L K ++ V E L + + ++ + + LRV+++ + Sbjct: 1040 EKVRDHLETGKNVVMQV--EATLEADQLKLLCRSAAPIDDAVADARGAMMGLRVFVEAEA 1097 Query: 116 PLREIHKYFENRQT-QNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITG 173 L I + +G + L + E+++ L + P++P+I L+ + G Sbjct: 1098 ALPNIAGLLGRMAEDPSIRTRGPVTLALIDPDLPGEVDVLLGEALPVNPQIKGALKSLAG 1157 Query: 174 ITKV 177 + V Sbjct: 1158 VALV 1161 >gi|84514324|ref|ZP_01001688.1| DNA polymerase III subunit alpha [Loktanella vestfoldensis SKA53] gi|84511375|gb|EAQ07828.1| DNA polymerase III subunit alpha [Loktanella vestfoldensis SKA53] Length = 1188 Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 5/116 (4%) Query: 65 LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDS-LRVYLQDRSPLREIHKY 123 L ++ E + + + V ++ + + LRV++ S + I Sbjct: 1072 LETGSQIVL--QCEATMEGDQLKLLGRSVSPIDSVVADAGSAGLRVFIDSPSAIDTIASI 1129 Query: 124 FENRQTQNYDK-QGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 + +G + + + E+E+ L +P++P+I L + G+ +V Sbjct: 1130 LASAARDGVRAARGPVYICLTNADLPGEVELDLGEPFPVNPQIKGALRSLGGVIEV 1185 >gi|326404871|ref|YP_004284953.1| DNA polymerase III alpha subunit [Acidiphilium multivorum AIU301] gi|325051733|dbj|BAJ82071.1| DNA polymerase III alpha subunit [Acidiphilium multivorum AIU301] Length = 1139 Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 56/118 (47%), Gaps = 8/118 (6%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 LL E +++V+ + +L + + + VE L+K + LR+ ++ R L I Sbjct: 1029 LLAEG--AMLLVTADLRLDGESLRVTAVDVEPLDKAAANAGAGLRITVEGREALGSIRAL 1086 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180 E + +G++ L+ R ++I L + +SP +A ++ I G+ +V ++ Sbjct: 1087 LE----REGRGKGRV-LLAPRIDTAARLDIALPGGFNVSPRLAQAMKMIRGVAEVAEL 1139 >gi|330994074|ref|ZP_08318004.1| DNA polymerase III subunit alpha [Gluconacetobacter sp. SXCC-1] gi|329759020|gb|EGG75534.1| DNA polymerase III subunit alpha [Gluconacetobacter sp. SXCC-1] Length = 1144 Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 51/117 (43%), Gaps = 8/117 (6%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123 +L + V+ + KL + I V LE+ + E +R++ L I Sbjct: 1034 ILVAGNAVV--VTADLKLEGEALRITASDVMELEQAAAEAAAEMRIWFDRADALEPIRDV 1091 Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQ 179 + + +G++ ++ ++E+TL + Y ++P +A ++ I G+ +V Q Sbjct: 1092 LQG----HGMGRGRV-ILLPSVAETRDVELTLGERYRVTPRVAQMIKAIEGVDRVEQ 1143 >gi|254419705|ref|ZP_05033429.1| DNA polymerase III, alpha subunit subfamily, putative [Brevundimonas sp. BAL3] gi|196185882|gb|EDX80858.1| DNA polymerase III, alpha subunit subfamily, putative [Brevundimonas sp. BAL3] Length = 1153 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 8/135 (5%) Query: 45 DPN--FLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME 102 DP F L +QL + + +L ++ V K S ++ + Sbjct: 1018 DPTGEFECLFPPEQLRKCR-EVLEPGASVMVRVRA--KASEGEVRFFGDDASQMDNLLDD 1074 Query: 103 MLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQG-KIGLIFLRSQGKIEIEITL-DHYPI 160 LR+++ R+ E K R +G +I L+ +G+ E+E+ L Y + Sbjct: 1075 ANIGLRIHVSARTADAEALKARLERARSGAIGKGGEISLVA-SLEGRQEVEVKLPGRYRL 1133 Query: 161 SPEIAFDLEHITGIT 175 + L+ G+ Sbjct: 1134 DGALRGALKSAPGVL 1148 >gi|114800101|ref|YP_760471.1| DNA polymerase III subunit alpha [Hyphomonas neptunium ATCC 15444] gi|114740275|gb|ABI78400.1| DNA polymerase III, alpha subunit [Hyphomonas neptunium ATCC 15444] Length = 1140 Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 15/123 (12%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLD---SLRVYL---QDRSPL 117 LL+ K I V+ L + +RL ++E ++ + SL V L D L Sbjct: 1022 LLQPGKAVAITVTA----KLNGEELRLNLDRAVELEAARLSKPSGSLMVRLGPDADPEDL 1077 Query: 118 REIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITK 176 + + R Q D + ++ L + + + L Y I L+ + G+ K Sbjct: 1078 AGVIR----RLEQVSDGDRGVIIVELILRDGRIVTMRLPQTYTIGLRAQRALKEVPGVEK 1133 Query: 177 VVQ 179 V Sbjct: 1134 VDP 1136 >gi|242771604|ref|XP_002477876.1| monocarboxylate permease, putative [Talaromyces stipitatus ATCC 10500] gi|218721495|gb|EED20913.1| monocarboxylate permease, putative [Talaromyces stipitatus ATCC 10500] Length = 1396 Score = 42.0 bits (97), Expect = 0.040, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 36 EMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVES 95 +++ Q +E S ++QQ++ EK RL EK + +Q + + + ++ +++ Sbjct: 1008 QLERQRKQEKARQTSFIQEQQIKFEK-RLEEEKDKLVKANAQHFERAKKENATLKENIDT 1066 Query: 96 LEKKSMEMLDSLRVYLQDRSPLREIHKYFENR 127 L ++ ++ +L++Y+Q+ + L ++R Sbjct: 1067 LREEKAQIEKTLKLYVQNSNDLESQMDELKSR 1098 >gi|167587214|ref|ZP_02379602.1| amino acid adenylation domain [Burkholderia ubonensis Bu] Length = 615 Score = 41.2 bits (95), Expect = 0.057, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 6/72 (8%) Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172 P + + G + + G+I+ ++ L I P EI L Sbjct: 385 PDPFVPGARMYRTGDLARRRADGALDYL-----GRIDTQVKLRGQRIEPGEIEALLRAAP 439 Query: 173 GITKVVQVIHNE 184 G+ V V+ +E Sbjct: 440 GVHDAVVVVRDE 451 >gi|206560058|ref|YP_002230822.1| ornibactin biosynthesis non-ribosomal peptide synthase [Burkholderia cenocepacia J2315] gi|198036099|emb|CAR51994.1| ornibactin biosynthesis non-ribosomal peptide synthase [Burkholderia cenocepacia J2315] Length = 3222 Score = 40.8 bits (94), Expect = 0.080, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%) Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172 P + + G + + G+++ ++ L I P EI L Sbjct: 2992 PDPFVPGARMYRTGDLARRRADGALDYL-----GRVDTQVKLRGQRIEPGEIEALLRAAP 3046 Query: 173 GITKVVQVIHNE 184 G+ V ++ +E Sbjct: 3047 GVNDAVVIVRDE 3058 >gi|170732963|ref|YP_001764910.1| amino acid adenylation domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169816205|gb|ACA90788.1| amino acid adenylation domain protein [Burkholderia cenocepacia MC0-3] Length = 3221 Score = 40.8 bits (94), Expect = 0.080, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%) Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172 P + + G + + G+++ ++ L I P EI L Sbjct: 2991 PDPFVPGARMYRTGDLARRRADGALDYL-----GRVDTQVKLRGQRIEPGEIEALLRAAP 3045 Query: 173 GITKVVQVIHNE 184 G+ V ++ +E Sbjct: 3046 GVNDAVVIVRDE 3057 >gi|107022713|ref|YP_621040.1| amino acid adenylation [Burkholderia cenocepacia AU 1054] gi|116689662|ref|YP_835285.1| amino acid adenylation domain-containing protein [Burkholderia cenocepacia HI2424] gi|105892902|gb|ABF76067.1| Amino acid adenylation [Burkholderia cenocepacia AU 1054] gi|116647751|gb|ABK08392.1| amino acid adenylation domain protein [Burkholderia cenocepacia HI2424] Length = 3231 Score = 40.8 bits (94), Expect = 0.080, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%) Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172 P + + G + + G+++ ++ L I P EI L Sbjct: 3001 PDPFVPGARMYRTGDLARRRADGALDYL-----GRVDTQVKLRGQRIEPGEIEALLRAAP 3055 Query: 173 GITKVVQVIHNE 184 G+ V ++ +E Sbjct: 3056 GVNDAVVIVRDE 3067 >gi|78066256|ref|YP_369025.1| non-ribosomal peptide synthase [Burkholderia sp. 383] gi|77967001|gb|ABB08381.1| Non-ribosomal peptide synthase [Burkholderia sp. 383] Length = 3219 Score = 40.8 bits (94), Expect = 0.080, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%) Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172 P + + G + + G+++ ++ L I P EI L Sbjct: 2989 PDPFVPGARMYRTGDLARRRADGALDYL-----GRVDTQVKLRGQRIEPGEIEALLRAAP 3043 Query: 173 GITKVVQVIHNE 184 G+ V ++ +E Sbjct: 3044 GVNDAVVIVRDE 3055 >gi|162148792|ref|YP_001603253.1| DNA polymerase III subunit alpha [Gluconacetobacter diazotrophicus PAl 5] gi|161787369|emb|CAP56964.1| putative DNA polymerase III subunit alpha [Gluconacetobacter diazotrophicus PAl 5] Length = 1142 Score = 40.8 bits (94), Expect = 0.095, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 49/108 (45%), Gaps = 6/108 (5%) Query: 73 IVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNY 132 ++V+ + +L + I V +LE+ + + LR++ + IH + Sbjct: 1039 VLVTADLRLDGEALRITGSDVVALEQAAADAAAELRIWFDREDAITPIHAILSEEKG--- 1095 Query: 133 DKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQ 179 +GK+ ++ ++E+ L Y ++P +A ++ + G+ +V Q Sbjct: 1096 -GRGKV-ILLPSVAETRDVEVRLGGAYRVTPRMAQMIKAVAGVARVEQ 1141 >gi|209545459|ref|YP_002277688.1| DNA polymerase III subunit alpha [Gluconacetobacter diazotrophicus PAl 5] gi|209533136|gb|ACI53073.1| DNA polymerase III, alpha subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 1142 Score = 40.4 bits (93), Expect = 0.096, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 49/108 (45%), Gaps = 6/108 (5%) Query: 73 IVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNY 132 ++V+ + +L + I V +LE+ + + LR++ + IH + Sbjct: 1039 VLVTADLRLDGEALRITGSDVVALEQAAADAAAELRIWFDREDAITPIHAILSEEKG--- 1095 Query: 133 DKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQ 179 +GK+ ++ ++E+ L Y ++P +A ++ + G+ +V Q Sbjct: 1096 -GRGKV-ILLPSVAETRDVEVRLGGAYRVTPRMAQMIKAVAGVARVEQ 1141 >gi|296283776|ref|ZP_06861774.1| DNA polymerase III, alpha subunit [Citromicrobium bathyomarinum JL354] Length = 1155 Score = 40.4 bits (93), Expect = 0.098, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 44/116 (37%), Gaps = 6/116 (5%) Query: 66 REKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFE 125 +E ++ V + + + + L + + L + + + L E+ + Sbjct: 1034 QESTCVLLTVELDSPSPDEPPRVTIRGARPLAEVAGGQRMLLTLEVSSEAALGELALSLQ 1093 Query: 126 NRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180 G++ + QG+ + + L H Y + ++A LE I GI+ + V Sbjct: 1094 ----PGPPGHGEVQIALDLGQGERPV-MRLGHDYKVDGKLADALERIEGISNITLV 1144 >gi|221197924|ref|ZP_03570970.1| linear gramicidin synthetase subunit D [Burkholderia multivorans CGD2M] gi|221204518|ref|ZP_03577535.1| amino acid adenylation domain protein [Burkholderia multivorans CGD2] gi|221175375|gb|EEE07805.1| amino acid adenylation domain protein [Burkholderia multivorans CGD2] gi|221181856|gb|EEE14257.1| linear gramicidin synthetase subunit D [Burkholderia multivorans CGD2M] Length = 3221 Score = 40.0 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%) Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172 P + + G + + G+++ ++ L I P EI L Sbjct: 2991 PDPFAPGERMYRTGDLARRRADGALDYL-----GRVDTQVKLRGQRIEPGEIEALLRAAP 3045 Query: 173 GITKVVQVIHNE 184 G+ V ++ +E Sbjct: 3046 GVHDAVVIVRDE 3057 >gi|221212942|ref|ZP_03585918.1| linear gramicidin synthetase subunit D [Burkholderia multivorans CGD1] gi|221167155|gb|EED99625.1| linear gramicidin synthetase subunit D [Burkholderia multivorans CGD1] Length = 3221 Score = 40.0 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%) Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172 P + + G + + G+++ ++ L I P EI L Sbjct: 2991 PDPFAPGERMYRTGDLARRRADGALDYL-----GRVDTQVKLRGQRIEPGEIEALLRAAP 3045 Query: 173 GITKVVQVIHNE 184 G+ V ++ +E Sbjct: 3046 GVHDAVVIVRDE 3057 >gi|154244959|ref|YP_001415917.1| amino acid adenylation domain-containing protein [Xanthobacter autotrophicus Py2] gi|154159044|gb|ABS66260.1| amino acid adenylation domain [Xanthobacter autotrophicus Py2] Length = 2706 Score = 39.7 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 12/71 (16%) Query: 113 DRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHI 171 D P+ + G L+FL G+ + ++ L Y I P EIA L+ + Sbjct: 859 DNGPV------YRTGDLVRRRADG--SLVFL---GRADAQVKLRGYRIEPGEIAAALKAV 907 Query: 172 TGITKVVQVIH 182 G+ V+H Sbjct: 908 EGVRDAAVVLH 918 >gi|187918795|ref|YP_001887826.1| amino acid adenylation domain-containing protein [Burkholderia phytofirmans PsJN] gi|187717233|gb|ACD18456.1| amino acid adenylation domain protein [Burkholderia phytofirmans PsJN] Length = 3230 Score = 39.7 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%) Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172 P + + G + + G+++ ++ L I P EI L Sbjct: 2994 PDPFSRGARLYRTGDLARRRADGALDYL-----GRMDTQVKLRGQRIEPGEIEALLRATP 3048 Query: 173 GITKVVQVIHNE 184 G+ V ++ +E Sbjct: 3049 GVHDAVVIVRDE 3060 >gi|186472866|ref|YP_001860208.1| amino acid adenylation domain-containing protein [Burkholderia phymatum STM815] gi|184195198|gb|ACC73162.1| amino acid adenylation domain protein [Burkholderia phymatum STM815] Length = 3224 Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 6/72 (8%) Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172 P + + + G + + G+ + ++ L I P EI L Sbjct: 2988 PDPFKPGARLYRTGDLVCRRADGVLDYL-----GRADQQVKLRGLRIEPGEIEAVLRAAP 3042 Query: 173 GITKVVQVIHNE 184 G+ V ++ ++ Sbjct: 3043 GVHDAVVIVRDD 3054 >gi|170703885|ref|ZP_02894569.1| amino acid adenylation domain protein [Burkholderia ambifaria IOP40-10] gi|170131207|gb|EDS99850.1| amino acid adenylation domain protein [Burkholderia ambifaria IOP40-10] Length = 821 Score = 39.3 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%) Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172 P + + G + + G+++ ++ L I P EI L Sbjct: 591 PDPFVPGARMYRTGDLARRRADGALDYL-----GRVDTQVKLRGQRIEPGEIEALLRTAP 645 Query: 173 GITKVVQVIHNE 184 G+ V ++ +E Sbjct: 646 GVHDAVVIVRDE 657 >gi|15487658|gb|AAD00894.3| CHIP6 [Glomerella cingulata] Length = 914 Score = 39.3 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 44/139 (31%), Gaps = 23/139 (16%) Query: 58 EEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLD-SLRVYLQ---- 112 E E P+ + + +QE++ + + + + D +L+ ++ Sbjct: 628 EREAPQDIEPTPDLLQGQAQEEREKSVGEGTDTTSDQQTDNTGTQTQDGNLKCVVRENTL 687 Query: 113 DRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKI----------------EIEITLD 156 S + I ++ QN D +I ++ +G+ E+ Sbjct: 688 SPSQMNMIALKMASKSLQNADPHAEIAMLEKTPEGRRKSSVVRYQKRQRGRAKEVARATG 747 Query: 157 HYPISPEIAFDLEHITGIT 175 Y + EIA G Sbjct: 748 RYGL--EIAKAGLQAPGAV 764 >gi|161524771|ref|YP_001579783.1| amino acid adenylation domain-containing protein [Burkholderia multivorans ATCC 17616] gi|189350474|ref|YP_001946102.1| D-alanine-poly(phosphoribitol) ligase [Burkholderia multivorans ATCC 17616] gi|160342200|gb|ABX15286.1| amino acid adenylation domain protein [Burkholderia multivorans ATCC 17616] gi|189334496|dbj|BAG43566.1| D-alanine-poly(phosphoribitol) ligase [Burkholderia multivorans ATCC 17616] Length = 3219 Score = 39.3 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 6/72 (8%) Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172 P + + G + + G+++ ++ L I P EI L Sbjct: 2989 PDPFVPGERMYRTGDLARRRADGALDYL-----GRVDTQVKLRGQRIEPGEIEALLRAAP 3043 Query: 173 GITKVVQVIHNE 184 G+ V V+ +E Sbjct: 3044 GVHDAVVVVRDE 3055 >gi|325524262|gb|EGD02383.1| non-ribosomal peptide synthase [Burkholderia sp. TJI49] Length = 465 Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%) Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172 P + + G + + G+++ ++ L I P EI L Sbjct: 384 PDPFVPGARMYRTGDLARRRADGALDYL-----GRVDTQVKLRGQRIEPGEIEVLLRAAP 438 Query: 173 GITKVVQVIHNE 184 G+ V ++ +E Sbjct: 439 GVHDAVVIVRDE 450 >gi|172060609|ref|YP_001808261.1| amino acid adenylation domain-containing protein [Burkholderia ambifaria MC40-6] gi|171993126|gb|ACB64045.1| amino acid adenylation domain protein [Burkholderia ambifaria MC40-6] Length = 3227 Score = 38.5 bits (88), Expect = 0.37, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%) Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172 P + + G + + G+++ ++ L I P EI L Sbjct: 2997 PDPFVPGARMYRTGDLARRRADGALDYL-----GRVDTQVKLRGQRIEPGEIEALLRMAP 3051 Query: 173 GITKVVQVIHNE 184 G+ V ++ +E Sbjct: 3052 GVHDAVVIVRDE 3063 >gi|171322179|ref|ZP_02911033.1| amino acid adenylation domain protein [Burkholderia ambifaria MEX-5] gi|171092505|gb|EDT37835.1| amino acid adenylation domain protein [Burkholderia ambifaria MEX-5] Length = 1683 Score = 38.5 bits (88), Expect = 0.37, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%) Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172 P + + G + + G+++ ++ L I P EI L Sbjct: 1453 PDPFVPGARMYRTGDLARRRADGALDYL-----GRVDTQVKLRGQRIEPGEIEALLRMAP 1507 Query: 173 GITKVVQVIHNE 184 G+ V ++ +E Sbjct: 1508 GVHDAVVIVRDE 1519 >gi|115351590|ref|YP_773429.1| amino acid adenylation domain-containing protein [Burkholderia ambifaria AMMD] gi|115281578|gb|ABI87095.1| amino acid adenylation domain protein [Burkholderia ambifaria AMMD] Length = 3227 Score = 38.5 bits (88), Expect = 0.37, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%) Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172 P + + G + + G+++ ++ L I P EI L Sbjct: 2997 PDPFVPGARMYRTGDLARRRADGALDYL-----GRVDTQVKLRGQRIEPGEIEALLRMAP 3051 Query: 173 GITKVVQVIHNE 184 G+ V ++ +E Sbjct: 3052 GVHDAVVIVRDE 3063 >gi|108763578|ref|YP_632180.1| non-ribosomal peptide synthetase [Myxococcus xanthus DK 1622] gi|108467458|gb|ABF92643.1| non-ribosomal peptide synthetase [Myxococcus xanthus DK 1622] Length = 4528 Score = 38.5 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 6/76 (7%) Query: 110 YLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDL 168 Y+ D + + + + G++ I G+ + ++ + + + P E+A L Sbjct: 2971 YVPDPFSMEAGARMYRTGDKVRWLGDGRLEFI-----GRTDFQVKVRGFRVEPGEVAAVL 3025 Query: 169 EHITGITKVVQVIHNE 184 + V V E Sbjct: 3026 RAHPDVQDAVVVAREE 3041 >gi|134295692|ref|YP_001119427.1| amino acid adenylation domain-containing protein [Burkholderia vietnamiensis G4] gi|134138849|gb|ABO54592.1| amino acid adenylation domain protein [Burkholderia vietnamiensis G4] Length = 3242 Score = 38.5 bits (88), Expect = 0.47, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%) Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172 P + + G + + G+++ ++ L I P EI L Sbjct: 3012 PDPFVPGARMYRTGDLARRRPDGALDYL-----GRVDTQVKLRGQRIEPGEIEVLLRAAP 3066 Query: 173 GITKVVQVIHNE 184 G+ V ++ +E Sbjct: 3067 GVHDAVVIVRDE 3078 >gi|94309458|ref|YP_582668.1| acriflavin resistance protein [Cupriavidus metallidurans CH34] gi|93353310|gb|ABF07399.1| multidrug efflux system, subunit B [Cupriavidus metallidurans CH34] Length = 1051 Score = 38.5 bits (88), Expect = 0.47, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 16/121 (13%) Query: 52 QEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYL 111 Q Q +E+ P +L E P +I + Q +R + S + + LR Y+ Sbjct: 664 QYQFTVEDPDPAVLAEWVPKLI------ERLKQEPELR-------DVASDQQNNGLRAYV 710 Query: 112 ---QDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDL 168 +D + I + + Q + IF +S + T+ + +SPE L Sbjct: 711 EIDRDAAARFGITTAVIDSALYSAFGQRLVSTIFTQSSQYRVVLETMPQFRVSPESLSAL 770 Query: 169 E 169 Sbjct: 771 R 771 >gi|317057030|ref|YP_004105497.1| diguanylate cyclase [Ruminococcus albus 7] gi|315449299|gb|ADU22863.1| diguanylate cyclase with PAS/PAC sensor [Ruminococcus albus 7] Length = 1136 Score = 38.1 bits (87), Expect = 0.50, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 10/112 (8%) Query: 6 FPKNNNRKGKKK-PDGNHDFLFLEDCYDHAIEMKLQE-------AEEDPNFLSLQEQQQL 57 + + N G D H + F E+CYD A+EM E A E + EQ + Sbjct: 723 YIEYNTYNGGDVLSDAVHGWHFFEECYDAAVEMVYPEDRDLVIRAVERKTMMKALEQNNI 782 Query: 58 EEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRV 109 RL+R+ P + + D ++ V +++++ E + R+ Sbjct: 783 FTMTYRLIRDGVPVYVTMKVTRM--KDDDRFIIMSVTNVDEQMKERQAAQRM 832 >gi|27378866|ref|NP_770395.1| ribose-5-phosphate isomerase A [Bradyrhizobium japonicum USDA 110] gi|41017725|sp|Q89NS9|RPIA_BRAJA RecName: Full=Ribose-5-phosphate isomerase A; AltName: Full=Phosphoriboisomerase A; Short=PRI gi|27352015|dbj|BAC49020.1| ribose 5-phosphate isomerase [Bradyrhizobium japonicum USDA 110] Length = 241 Score = 38.1 bits (87), Expect = 0.57, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 3/58 (5%) Query: 119 EIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITK 176 + R+ + DK G + F+ G ++ L P +A L I G+ + Sbjct: 157 GVSGQMAVRKAKGGDKDGHV---FVTDGGHWILDAQLGRIVDPPSLAKALSAIPGVVE 211 >gi|160885592|ref|ZP_02066595.1| hypothetical protein BACOVA_03594 [Bacteroides ovatus ATCC 8483] gi|237719632|ref|ZP_04550113.1| RNA polymerase ECF-type sigma factor [Bacteroides sp. 2_2_4] gi|156109214|gb|EDO10959.1| hypothetical protein BACOVA_03594 [Bacteroides ovatus ATCC 8483] gi|229450901|gb|EEO56692.1| RNA polymerase ECF-type sigma factor [Bacteroides sp. 2_2_4] Length = 190 Score = 37.7 bits (86), Expect = 0.76, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 7/95 (7%) Query: 30 CYDHAIEMKLQEAEEDPNFLSLQE-QQQLEEEKPRLLREKKPYIIVVSQEDKLSLQ---R 85 CY+H ++Q + EDP+F ++E ++E+ RL + + +DK + Sbjct: 93 CYEHMFAKEMQTSFEDPDFYVVEELMAKIEKAVMRLPDSYRITFEMSRYQDKTYKEIAKE 152 Query: 86 DSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREI 120 ++ + VE ++++ + LRV L+D PL I Sbjct: 153 LNVSIKLVEYRIQQALRL---LRVELKDYLPLITI 184 >gi|258625634|ref|ZP_05720515.1| GTP-binding protein HflX [Vibrio mimicus VM603] gi|258582089|gb|EEW06957.1| GTP-binding protein HflX [Vibrio mimicus VM603] Length = 429 Score = 37.3 bits (85), Expect = 0.81, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 10/119 (8%) Query: 33 HAIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSI 88 A+E LQE A E P L + + LEE+ PR+ R E P ++ +S + + Sbjct: 296 QAVETVLQEIDAHEVPTLLVMNKIDSLEEQAPRIERDDEGIPRVVWISA---MQGSGIEL 352 Query: 89 RLLWV-ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146 + E L + +E LR+ + + +R + Q + YD +G + + Q Sbjct: 353 LFQTLSERLASQVVEHH--LRIPPRHQGRIRSTFFQMKCIQQEEYDPEGNLLITVRMQQ 409 >gi|91779564|ref|YP_554772.1| non-ribosomal peptide synthase [Burkholderia xenovorans LB400] gi|91692224|gb|ABE35422.1| Non-ribosomal peptide synthase [Burkholderia xenovorans LB400] Length = 3180 Score = 37.3 bits (85), Expect = 0.81, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 6/72 (8%) Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172 P + + G + + G+++ ++ L I EI L Sbjct: 2944 PDPFAHGARLYRTGDLACRRADGALDYL-----GRMDTQVKLRGQRIELGEIEALLRAAP 2998 Query: 173 GITKVVQVIHNE 184 G+ V ++ +E Sbjct: 2999 GVHDAVVIVRDE 3010 >gi|320160344|ref|YP_004173568.1| putative S1B family peptidase [Anaerolinea thermophila UNI-1] gi|319994197|dbj|BAJ62968.1| putative S1B family peptidase [Anaerolinea thermophila UNI-1] Length = 544 Score = 37.3 bits (85), Expect = 0.85, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 2/105 (1%) Query: 63 RLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHK 122 +L E++ +I+ +D + + +R E S M+ + + P + I Sbjct: 326 KLDEEQRGALIIEVAKDSPADKA-GLRGSTEEVKLDGSTAMVGGDVIVAINGEPTQTIED 384 Query: 123 YFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFD 167 T+ ++ + LR + + +TL+ P S + A Sbjct: 385 VIAYLATKTNVGD-QVNITILRDGKEKTVSVTLEARPSSKQTASA 428 >gi|138894637|ref|YP_001125090.1| YlbL protein [Geobacillus thermodenitrificans NG80-2] gi|196247754|ref|ZP_03146456.1| PDZ/DHR/GLGF domain protein [Geobacillus sp. G11MC16] gi|134266150|gb|ABO66345.1| YlbL protein [Geobacillus thermodenitrificans NG80-2] gi|196212538|gb|EDY07295.1| PDZ/DHR/GLGF domain protein [Geobacillus sp. G11MC16] Length = 339 Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 14/133 (10%) Query: 33 HAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVS---QEDKLSLQRDSIR 89 H +E QE E D + +QLE L+ + K IVV+ ++ + + Sbjct: 81 HPVEEIKQEGESDKEY----TMRQLE-----LMEQSKEAAIVVAYQHAGKPVTNEAKGVY 131 Query: 90 LLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKI 149 ++ V + + R+ D P+ + + + ++ + F+R + + Sbjct: 132 VMSVLPNMPAAGRLEAGDRIAAIDGQPINT-SEQIVSYVREKQAGD-RVRVTFIRDRKQH 189 Query: 150 EIEITLDHYPISP 162 E E+ L +P P Sbjct: 190 EAELVLKPFPHHP 202 >gi|90424858|ref|YP_533228.1| amino acid adenylation [Rhodopseudomonas palustris BisB18] gi|90106872|gb|ABD88909.1| Amino acid adenylation [Rhodopseudomonas palustris BisB18] Length = 1059 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 7/69 (10%) Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172 R+PL +I +Y Q G++ G+ + ++ L Y + P EI L Sbjct: 827 RTPLSDIPEYRTGDQVSLGF-DGRLLF-----HGRRDRQVKLAGYRVEPGEIEAALRAHP 880 Query: 173 GITKVVQVI 181 GI + V+ Sbjct: 881 GILEAAVVV 889 >gi|158424870|ref|YP_001526162.1| vicibactin biosynthesis non-ribosomal peptide synthase protein [Azorhizobium caulinodans ORS 571] gi|158331759|dbj|BAF89244.1| vicibactin biosynthesis non-ribosomal peptide synthase protein [Azorhizobium caulinodans ORS 571] Length = 1344 Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 6/51 (11%) Query: 135 QGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHITGITKVVQVIHNE 184 G + + G+++ ++ L Y I P EI L + G+++ V+ ++ Sbjct: 869 DGTVEFV-----GRVDHQVKLRGYRIEPGEIEAALRTLPGVSECAVVLRHD 914 >gi|330723884|gb|AEC46254.1| hypothetical protein SRH_03585 [Mycoplasma hyorhinis MCLD] Length = 350 Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 57/153 (37%), Gaps = 19/153 (12%) Query: 25 LFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQ 84 L + DC+DH I+ EA E P+F+ + + ++E + + K + + D ++ Sbjct: 17 LGIVDCHDHLIKNYGPEAHEHPDFIMMSKDAAIKEMNEYVAKGGKTVVTM----DPPNVG 72 Query: 85 RDSIRLLWV-ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFL 143 RD ++L + + LE K+ + + + ++ Sbjct: 73 RDVYQMLDIAKKLEGKAN--------IIMATGFHKAAFYDKGASWLALAPTDKIVKMVV- 123 Query: 144 RSQGKIEIEITLDHYPISPEIAFDLEHITGITK 176 EIE +D Y S + + GI K Sbjct: 124 -----AEIEEGMDEYNYSGPVVKRSKSKAGIIK 151 >gi|304373246|ref|YP_003856455.1| hypothetical protein MHR_0460 [Mycoplasma hyorhinis HUB-1] gi|304309437|gb|ADM21917.1| hypothetical protein MHR_0460 [Mycoplasma hyorhinis HUB-1] Length = 350 Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 57/153 (37%), Gaps = 19/153 (12%) Query: 25 LFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQ 84 L + DC+DH I+ EA E P+F+ + + ++E + + K + + D ++ Sbjct: 17 LGIVDCHDHLIKNYGPEAHEHPDFIMMSKDAAIKEMNEYVAKGGKTVVTM----DPPNVG 72 Query: 85 RDSIRLLWV-ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFL 143 RD ++L + + LE K+ + + + ++ Sbjct: 73 RDVYQMLDIAKKLEGKAN--------IIMATGFHKAAFYDKGASWLALAPTDKIVKMVV- 123 Query: 144 RSQGKIEIEITLDHYPISPEIAFDLEHITGITK 176 EIE +D Y S + + GI K Sbjct: 124 -----AEIEEGMDEYNYSGPVVKRSKSKAGIIK 151 >gi|330940476|gb|EGH43565.1| hypothetical protein PSYPI_14723 [Pseudomonas syringae pv. pisi str. 1704B] Length = 490 Score = 36.2 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 55/135 (40%), Gaps = 10/135 (7%) Query: 52 QEQQQLEEEKPRLLR-EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVY 110 Q+QQ ++E++P L ++ +Q L + I L + SL+ + E + V Sbjct: 315 QQQQAVQEKRPFRLELSPADQELMNTQMKTLLAAKPHIELEKL-SLKTSNGESHMRIAVD 373 Query: 111 LQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRS--------QGKIEIEITLDHYPISP 162 L D PL + + + + + +R +G+ ++++ D + Sbjct: 374 LADPGPLDQPSDALLKKSLGEVNAKVVLSKPMIRDLATQQAMREGQTDLKVIADQAKAAG 433 Query: 163 EIAFDLEHITGITKV 177 ++A + + + KV Sbjct: 434 DMASAMAEMMQLAKV 448 >gi|160915731|ref|ZP_02077939.1| hypothetical protein EUBDOL_01740 [Eubacterium dolichum DSM 3991] gi|158432207|gb|EDP10496.1| hypothetical protein EUBDOL_01740 [Eubacterium dolichum DSM 3991] Length = 283 Score = 36.2 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 14/99 (14%) Query: 18 PDGNHDFLFLEDCYDHAIEMKLQ----EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYII 73 N +FLFL+ Y+ ++ +Q EAE+ P+++ ++ +++ + P +I Sbjct: 171 SSSNANFLFLQISYESDLDKAMQIIREEAEKHPHYMDIRNAEEIAADMP-------NIVI 223 Query: 74 VVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQ 112 V +R + + ML LR+ ++ Sbjct: 224 RVI---DFMDSGIQLRATIPSRSKAEGFAMLSDLRISIK 259 >gi|258654001|ref|YP_003203157.1| amino acid adenylation domain-containing protein [Nakamurella multipartita DSM 44233] gi|258557226|gb|ACV80168.1| amino acid adenylation domain protein [Nakamurella multipartita DSM 44233] Length = 5698 Score = 36.2 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 147 GKIEIEITLDHYPISP-EIAFDLEHITGITKVVQVIHN 183 G+I+ ++ + Y + P EIA L G+ V +H+ Sbjct: 1966 GRIDDQVKIRGYRVEPGEIAAQLRRCPGVRDAVVTVHD 2003 >gi|223648604|gb|ACN11060.1| Tripartite motif-containing protein 25 [Salmo salar] Length = 450 Score = 36.2 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 7/99 (7%) Query: 35 IEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVE 94 + KL +AE+ SLQEQ++ E+ + L + I+ V +E ++ L+ L Sbjct: 234 VGRKLSKAEK-----SLQEQKEEEQINKKFLEDSDQRIMAVGEELQVHLEGFLTALRDCT 288 Query: 95 SLEKKSM--EMLDSLRVYLQDRSPLREIHKYFENRQTQN 131 ++ + ++ +D + L+++H +N +N Sbjct: 289 RSQESECGPNIQRNIAKVAKDHARLQDVHSRIQNLAQEN 327 >gi|258623500|ref|ZP_05718502.1| GTP-binding protein HflX [Vibrio mimicus VM573] gi|262163593|ref|ZP_06031336.1| GTP-binding protein HflX [Vibrio mimicus VM223] gi|262172554|ref|ZP_06040232.1| GTP-binding protein HflX [Vibrio mimicus MB-451] gi|258584212|gb|EEW08959.1| GTP-binding protein HflX [Vibrio mimicus VM573] gi|261893630|gb|EEY39616.1| GTP-binding protein HflX [Vibrio mimicus MB-451] gi|262027960|gb|EEY46622.1| GTP-binding protein HflX [Vibrio mimicus VM223] Length = 429 Score = 35.8 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 10/119 (8%) Query: 33 HAIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSI 88 A+E LQE A E P L + + LEE+ PR+ R E P ++ +S + + Sbjct: 296 QAVETVLQEIDAHEVPTLLVMNKIDSLEEQAPRIERDDEGIPRVVWISA---MQGSGIEL 352 Query: 89 RLLWV-ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146 + E L + +E LR+ + + +R + Q + YD +G + + Q Sbjct: 353 LFQALSERLASQVVEHH--LRIPPRHQGRIRSTFFQMKCIQQEEYDPEGNLLITVRMQQ 409 >gi|320162224|ref|YP_004175449.1| putative ABC transporter ATP-binding protein [Anaerolinea thermophila UNI-1] gi|319996078|dbj|BAJ64849.1| putative ABC transporter ATP-binding protein [Anaerolinea thermophila UNI-1] Length = 314 Score = 35.8 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 39/110 (35%), Gaps = 5/110 (4%) Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130 II+ L + L V+SL+++ + +L S + Q ++ + + R Sbjct: 156 IIIMDEPTQGLDPEGAREFLQLVQSLKEEGITILLSSHLLHQVQAICDRVGLFNRGRMEL 215 Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKVVQV 180 + + ++ I+PE+ L+ + G V + Sbjct: 216 VGTVDELARRVL-----GRAFRVVMEVDDITPELTKALKKVPGAVDVYPL 260 >gi|71745330|ref|XP_827295.1| small nuclear RNA gene activation protein 50 [Trypanosoma brucei] gi|70831460|gb|EAN76965.1| small nuclear RNA gene activation protein (SNAP) 50, putative [Trypanosoma brucei] Length = 448 Score = 35.4 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 8/131 (6%) Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100 EAE+ L + + LEEE P L ++ + ++ + R L E Sbjct: 79 EAEDAMRKLEARLDRLLEEEGPNLPELPTRRVLSKMERIVTQVKEEGERQLARVREEYSE 138 Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEI-EITLDHYP 159 E +L +L D P++ + R+ + + G+ + + +G E+ YP Sbjct: 139 CERRPALLQFLVDLEPVKRL------REQLDEEYDGRKLRLKVMDEGNSELFRQAEPRYP 192 Query: 160 ISPEIAFDLEH 170 + IA L H Sbjct: 193 -NKGIAASLRH 202 >gi|195336800|ref|XP_002035021.1| GM14147 [Drosophila sechellia] gi|194128114|gb|EDW50157.1| GM14147 [Drosophila sechellia] Length = 4635 Score = 35.4 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 6/142 (4%) Query: 27 LEDCYDHAIEMKLQEAE-EDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQ- 84 LED + +E +++E E+P+ + EE+K +KK I Q ++ S + Sbjct: 797 LEDTVEKPLEALQEDSELENPDVQEFCVSIKEEEKKHTHPEKKKSSKITAEQPNQPSTEQ 856 Query: 85 -RDSIRLLWVESLEKK--SMEMLDSLRVYLQDRSPLREIHKYFEN-RQTQNYDKQGKIGL 140 S+ ++ E+K +++++ S + + ++HK R + +G+I + Sbjct: 857 YEISVTQQELKPEEEKPFTVQVIQSETNVEETKDDTGKVHKQVTTKRMLRRPAGEGEIEI 916 Query: 141 IFLRSQGKIEIEITLDHYPISP 162 I + + E EIT+ Y P Sbjct: 917 IEVVRDDQPEAEITIVEYEPEP 938 >gi|261331505|emb|CBH14499.1| small nuclear RNA gene activation protein (SNAP) 50, putative [Trypanosoma brucei gambiense DAL972] Length = 448 Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 8/131 (6%) Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100 EAE+ L + + LEEE P L ++ + ++ + R L E Sbjct: 79 EAEDAMRKLEARLDRLLEEEGPNLPELPTRRVLSKMERIVTQVKEEGERQLARVREEYSE 138 Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEI-EITLDHYP 159 E +L +L D P++ + R+ + + G+ + + +G E+ YP Sbjct: 139 CERRPALLQFLVDLEPVKRL------REQLDEEYDGRKLRLKVMDEGNSELFRHAEPRYP 192 Query: 160 ISPEIAFDLEH 170 + IA L H Sbjct: 193 -NKGIAASLRH 202 >gi|254292140|ref|ZP_04962912.1| GTP-binding protein HflX [Vibrio cholerae AM-19226] gi|150421939|gb|EDN13914.1| GTP-binding protein HflX [Vibrio cholerae AM-19226] Length = 429 Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 10/119 (8%) Query: 33 HAIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSI 88 A+E LQE A E P L + + LEE+ PR+ R E P ++ +S + + Sbjct: 296 QAVETVLQEIDAHEVPTLLVMNKIDNLEEQSPRIERDDEGVPRVVWISA---MQGAGIEL 352 Query: 89 RLLWV-ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146 + E L + +E LR+ + + +R Q + YD +G + + Q Sbjct: 353 LFEALSERLASQVVEHH--LRIPPRHQGRIRSTFFQMNCIQQEEYDPEGNLLITVRMQQ 409 >gi|37496897|emb|CAE46454.1| small nuclear RNA gene activation protein 50 [Trypanosoma brucei brucei] Length = 448 Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 8/131 (6%) Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100 EAE+ L + + LEEE P L ++ + ++ + R L E Sbjct: 79 EAEDAMRKLEARLDRLLEEEGPNLPELPTRRVLSKMERIVTQVKEEGERQLARVREEYSE 138 Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEI-EITLDHYP 159 E +L +L D P++ + R+ + + G+ + + +G E+ YP Sbjct: 139 CERRPALLQFLVDLEPVKRL------REQLDEEYDGRKLRLKVMDEGNSELFRHAEPRYP 192 Query: 160 ISPEIAFDLEH 170 + IA L H Sbjct: 193 -NKGIAASLRH 202 >gi|153217190|ref|ZP_01950954.1| GTP-binding protein HflX [Vibrio cholerae 1587] gi|153803483|ref|ZP_01958069.1| GTP-binding protein HflX [Vibrio cholerae MZO-3] gi|153827316|ref|ZP_01979983.1| GTP-binding protein HflX [Vibrio cholerae MZO-2] gi|153830894|ref|ZP_01983561.1| GTP-binding protein HflX [Vibrio cholerae 623-39] gi|229512374|ref|ZP_04401849.1| GTP-binding protein HflX [Vibrio cholerae TMA 21] gi|229526912|ref|ZP_04416315.1| GTP-binding protein HflX [Vibrio cholerae bv. albensis VL426] gi|297582276|ref|ZP_06944190.1| GTP-binding protein HflX [Vibrio cholerae RC385] gi|124113773|gb|EAY32593.1| GTP-binding protein HflX [Vibrio cholerae 1587] gi|124120984|gb|EAY39727.1| GTP-binding protein HflX [Vibrio cholerae MZO-3] gi|148873628|gb|EDL71763.1| GTP-binding protein HflX [Vibrio cholerae 623-39] gi|149738782|gb|EDM53124.1| GTP-binding protein HflX [Vibrio cholerae MZO-2] gi|229336081|gb|EEO01100.1| GTP-binding protein HflX [Vibrio cholerae bv. albensis VL426] gi|229350589|gb|EEO15534.1| GTP-binding protein HflX [Vibrio cholerae TMA 21] gi|297533495|gb|EFH72342.1| GTP-binding protein HflX [Vibrio cholerae RC385] gi|327483210|gb|AEA77617.1| GTP-binding protein HflX [Vibrio cholerae LMA3894-4] Length = 429 Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 10/119 (8%) Query: 33 HAIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSI 88 A+E LQE A E P L + + LEE+ PR+ R E P ++ +S + + Sbjct: 296 QAVETVLQEIDAHEVPTLLVMNKIDNLEEQSPRIERDDEGVPRVVWISA---MQGAGIEL 352 Query: 89 RLLWV-ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146 + E L + +E LR+ + + +R Q + YD +G + + Q Sbjct: 353 LFEALSERLASQVVEHH--LRIPPRHQGRIRSTFFQMNCIQQEEYDPEGNLLITVRMQQ 409 >gi|229519943|ref|ZP_04409374.1| GTP-binding protein HflX [Vibrio cholerae TM 11079-80] gi|229343071|gb|EEO08058.1| GTP-binding protein HflX [Vibrio cholerae TM 11079-80] Length = 429 Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 10/119 (8%) Query: 33 HAIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSI 88 A+E LQE A E P L + + LEE+ PR+ R E P ++ +S + + Sbjct: 296 QAVETVLQEIDAHEVPTLLVMNKIDNLEEQSPRIERDDEGVPRVVWISA---MQGAGIEL 352 Query: 89 RLLWV-ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146 + E L + +E LR+ + + +R Q + YD +G + + Q Sbjct: 353 LFEALSERLASQVVEHH--LRIPPRHQGRIRSTFFQMNCIQQEEYDPEGNLLITVRMQQ 409 >gi|50510945|dbj|BAD32458.1| mKIAA1476 protein [Mus musculus] Length = 1369 Score = 35.0 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 74/177 (41%), Gaps = 22/177 (12%) Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLL--REKK 69 RKG+ G+ +FL D D + KLQ E ++ ++L++++ + KK Sbjct: 847 RKGRPPNVGSAEFL---DNTDAKLLRKLQAQEIARQAAQIKLLRKLQKQEQARVAKEAKK 903 Query: 70 PYIIVVSQEDKLSLQRDSI--------RLLWV---------ESLEKKSMEMLDSLRVYLQ 112 I+ ++E + ++ I R+ + + LE+K + ++ + Q Sbjct: 904 QQAIMAAEEKRKQKEQMKIIKQQEKIKRIQQIRMEKELRAQQILEEKELRRQQAVLLKHQ 963 Query: 113 DRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLE 169 +R R+ + + + ++ + R + ++ E L+ + E+A +L+ Sbjct: 964 ERERRRQHVMLMKAMEARKKAEEKERLKQEKRDEKRLNKERKLEQRRLELEMAKELK 1020 >gi|328873605|gb|EGG21972.1| hypothetical protein DFA_01858 [Dictyostelium fasciculatum] Length = 1107 Score = 35.0 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 12/107 (11%) Query: 8 KNNNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQL--EEEKPRLL 65 N N ++ NH F LED +++ I EED F SLQ ++L +E + +L+ Sbjct: 544 NNGNPFNQEMNASNHSFYDLEDHHNYYI-------EEDEEFKSLQFARKLIEDERRAQLV 596 Query: 66 RE---KKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRV 109 E + ++ + + ++ ++ + LE K ++ L V Sbjct: 597 EEEENNRRLVLELLENEREEHEKSRQQQQTNNDLETKCVKCQKQLAV 643 >gi|296204397|ref|XP_002806949.1| PREDICTED: LOW QUALITY PROTEIN: titin-like [Callithrix jacchus] Length = 34170 Score = 35.0 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 9/95 (9%) Query: 15 KKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIV 74 K P+ DFLF+ H+ LQE + +Q Q+ +E +L E + +++ Sbjct: 3635 KPTPESTRDFLFIHGSV-HS--QPLQEPSPNLQLQIVQSQKTFSKEGILMLEEPESQVVL 3691 Query: 75 VSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRV 109 E ++ + SL ++E L +L V Sbjct: 3692 SDTEKIFPS---AMSIEQTNSL---TVEYLKTLLV 3720 >gi|170043669|ref|XP_001849500.1| wd-repeat protein [Culex quinquefasciatus] gi|167867017|gb|EDS30400.1| wd-repeat protein [Culex quinquefasciatus] Length = 1915 Score = 34.6 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 36 EMKLQEAEEDPNFLSLQEQ--QQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWV 93 E+ L E +DP FLSL++Q +Q + K +LL ++K I+ E + + R + Sbjct: 778 ELTLTEDIDDPAFLSLEQQKIKQENDRKAKLLNDRKNEILNTVAEYRKQFEAILARNQAL 837 >gi|262189578|ref|ZP_06047982.1| GTP-binding protein HflX [Vibrio cholerae CT 5369-93] gi|262034542|gb|EEY52878.1| GTP-binding protein HflX [Vibrio cholerae CT 5369-93] Length = 429 Score = 34.6 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 10/119 (8%) Query: 33 HAIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSI 88 A+E LQE A E P L + + LEE+ PR+ R E P ++ +S + + Sbjct: 296 QAVETVLQEIDAHEVPTLLVMNKIDNLEEQSPRIERDDEGVPRVVWISA---MQGSGIEL 352 Query: 89 RLLWV-ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146 + E L + +E LR+ + + +R Q + YD +G + + Q Sbjct: 353 LFEALSEHLASQVVEHH--LRIPPRHQGRIRSTFFQMNCIQQEEYDPEGNLLITVRMQQ 409 >gi|123489764|ref|XP_001325460.1| Myb-like DNA-binding domain containing protein [Trichomonas vaginalis G3] gi|121908360|gb|EAY13237.1| Myb-like DNA-binding domain containing protein [Trichomonas vaginalis G3] Length = 2210 Score = 34.6 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%) Query: 8 KNNNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLRE 67 +NN+ + K+ P N E + E+K Q E F S ++++ E +K LL Sbjct: 1888 QNNSEQKKQNPPENKKANVPELKKSTSFELKKQNVSESKKFNSPEQKKSPESKKSPLLEP 1947 Query: 68 KKP 70 KK Sbjct: 1948 KKS 1950 >gi|229526988|ref|ZP_04416384.1| GTP-binding protein HflX [Vibrio cholerae 12129(1)] gi|229335511|gb|EEO00992.1| GTP-binding protein HflX [Vibrio cholerae 12129(1)] Length = 429 Score = 34.6 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 10/119 (8%) Query: 33 HAIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSI 88 A+E LQE A E P L + + LEE+ PR+ R E P ++ +S + + Sbjct: 296 QAVETVLQEIDAHEVPTLLVMNKIDNLEEQSPRIERDDEGVPRVVWLSA---MQGAGIEL 352 Query: 89 RLLWV-ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146 + E L + +E LR+ + + +R Q + YD +G + + Q Sbjct: 353 LFEALSERLASQVVEHH--LRIPPRHQGRIRSTFFQMNCIQQEEYDPEGNLLITVRMQQ 409 >gi|262401560|ref|ZP_06078127.1| GTP-binding protein HflX [Vibrio sp. RC586] gi|262352275|gb|EEZ01404.1| GTP-binding protein HflX [Vibrio sp. RC586] Length = 429 Score = 34.6 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 11/119 (9%) Query: 33 HAIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSI 88 A+E LQE A E P L + + LEE+ PR+ R E P I+ +S + + Sbjct: 296 QAVETVLQEIDAHEVPTLLVMNKIDNLEEQTPRIERDDEGVPKIVWISA---MQGTGIEL 352 Query: 89 RLLWV-ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146 + E L + +E +LR+ + + +R Q + YD +G + LI +R Q Sbjct: 353 LFEALSERLASQVVEH--NLRIPPRHQGRIRSTFFQMNCIQQEEYDPEGNL-LITVRMQ 408 >gi|167392422|ref|XP_001740146.1| chromodomain helicase DNA binding protein [Entamoeba dispar SAW760] gi|165895824|gb|EDR23413.1| chromodomain helicase DNA binding protein, putative [Entamoeba dispar SAW760] Length = 1623 Score = 34.3 bits (77), Expect = 6.9, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 58/128 (45%), Gaps = 5/128 (3%) Query: 16 KKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVV 75 K+ N +FL E+ + QE+ +F S++++ +++EE+P ++ K+ Sbjct: 72 KETGNNTNFLLKENTQSNEQTKVKQESYIINSFESVKQETKIDEEQP--IQPKQMKHEEN 129 Query: 76 SQEDKLSLQRDSIRLLWVESLEKKSMEM---LDSLRVYLQDRSPLREIHKYFENRQTQNY 132 K+ + + ++L+K + + ++++++ PL+ IH + Q Sbjct: 130 VLVPKIDGEGIKQEITQEQNLQKNDLNHKVKQEDIQIHVKQEQPLQHIHNPLQPPIQQIN 189 Query: 133 DKQGKIGL 140 + KI L Sbjct: 190 QQNQKIPL 197 >gi|301618713|ref|XP_002938754.1| PREDICTED: serine/threonine-protein kinase MRCK alpha-like [Xenopus (Silurana) tropicalis] Length = 1590 Score = 34.3 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 8/59 (13%) Query: 33 HAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLL 91 H E KLQEAEE E ++L E ++ E K I +++ + + S R Sbjct: 864 HNTERKLQEAEE--------ENRKLRAEVEKVREEAKQKAITETKQQRPLIPFLSFRTE 914 >gi|261209769|ref|ZP_05924075.1| GTP-binding protein HflX [Vibrio sp. RC341] gi|260841185|gb|EEX67695.1| GTP-binding protein HflX [Vibrio sp. RC341] Length = 429 Score = 34.3 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 11/119 (9%) Query: 33 HAIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSI 88 A+E LQE A E P L + + LEE PR+ R E P ++ +S + + Sbjct: 296 QAVETVLQEIDAHEVPTLLVMNKIDNLEEHAPRIERDDEGVPRVVWISA---MQGTGIEL 352 Query: 89 RLLWV-ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146 + E L + +E +LR+ + + +R Q + YD +G + LI +R Q Sbjct: 353 LFEALSERLASQVVEH--NLRIPPRHQGRIRSTFFQMNCIQQEEYDPEGNL-LITVRLQ 408 >gi|330982386|gb|EGH80489.1| hypothetical protein PSYAP_28151 [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 286 Score = 34.3 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 52 QEQQQLEEEKPRLLR-EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVY 110 Q+QQ +E++P L ++ SQ L + I L + SL+ + E + V Sbjct: 111 QQQQAAQEKRPFRLELSPADQELMNSQMKTLLAAKPHIELEKL-SLKTSNGESHMRIAVD 169 Query: 111 LQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRS--------QGKIEIEITLDHYPISP 162 L D PL + + + + + +R +G+ ++++ D + Sbjct: 170 LADPGPLDQPSDALLMKSLGEVNAKVVLSKPMIRDLATQQAMREGQTDLKVIADQAKAAG 229 Query: 163 EIAFDLEHITGITKV 177 ++A + + + KV Sbjct: 230 DMASAMAEMMQLAKV 244 >gi|118380733|ref|XP_001023530.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain containing protein [Tetrahymena thermophila] gi|89305297|gb|EAS03285.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain containing protein [Tetrahymena thermophila SB210] Length = 2315 Score = 33.9 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 17/142 (11%) Query: 16 KKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVV 75 KK + D + A+++KLQE + + F+ + QQ L + +PR L+ K + Sbjct: 1038 KKSYPQSQIFLIADLWQEAMQLKLQEIDWE-KFIIQKFQQLLSKYQPRQLKPKFSF---- 1092 Query: 76 SQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQ 135 + K + R+ ++ E ++Q+ SP I + NR N Sbjct: 1093 --DQKSYQFAVNFRINKIQKEEDN----QKI--SFVQNLSPHFSIQRIKHNRTNMN---- 1140 Query: 136 GKIGLIFLRSQGKIEIEITLDH 157 G+ ++ E++ +L+ Sbjct: 1141 GENSSNSIKQSQIEEVKQSLNR 1162 Database: nr Posted date: May 13, 2011 4:10 AM Number of letters in database: 999,999,932 Number of sequences in database: 2,987,209 Database: /data/usr2/db/fasta/nr.01 Posted date: May 13, 2011 4:17 AM Number of letters in database: 999,998,956 Number of sequences in database: 2,896,973 Database: /data/usr2/db/fasta/nr.02 Posted date: May 13, 2011 4:23 AM Number of letters in database: 999,999,979 Number of sequences in database: 2,907,862 Database: /data/usr2/db/fasta/nr.03 Posted date: May 13, 2011 4:29 AM Number of letters in database: 999,999,513 Number of sequences in database: 2,932,190 Database: /data/usr2/db/fasta/nr.04 Posted date: May 13, 2011 4:33 AM Number of letters in database: 792,586,372 Number of sequences in database: 2,260,650 Lambda K H 0.307 0.135 0.349 Lambda K H 0.267 0.0413 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,090,647,755 Number of Sequences: 13984884 Number of extensions: 113756205 Number of successful extensions: 451667 Number of sequences better than 10.0: 332 Number of HSP's better than 10.0 without gapping: 126 Number of HSP's successfully gapped in prelim test: 485 Number of HSP's that attempted gapping in prelim test: 450714 Number of HSP's gapped (non-prelim): 1114 length of query: 184 length of database: 4,792,584,752 effective HSP length: 130 effective length of query: 54 effective length of database: 2,974,549,832 effective search space: 160625690928 effective search space used: 160625690928 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 77 (34.3 bits)