BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 537021.9.peg.754_1
         (184 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done


Results from round 1


>gi|315122785|ref|YP_004063274.1| DNA polymerase III subunit alpha [Candidatus Liberibacter
            solanacearum CLso-ZC1]
 gi|313496187|gb|ADR52786.1| DNA polymerase III subunit alpha [Candidatus Liberibacter
            solanacearum CLso-ZC1]
          Length = 1226

 Score =  251 bits (642), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 124/181 (68%), Positives = 150/181 (82%)

Query: 4    IFFPKNNNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPR 63
            IFFP  N+   KK  + N DFL LEDCYDH+IE KLQEAEEDPNFLS+QEQ++LE++KP 
Sbjct: 1045 IFFPNYNSSNRKKTSNKNRDFLTLEDCYDHSIERKLQEAEEDPNFLSVQEQRKLEKKKPY 1104

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LLREK PYII VSQED +S++RDS+RLL V+SL+ KSMEML SL++YLQD SPL EIHKY
Sbjct: 1105 LLREKNPYIIFVSQEDMVSVKRDSVRLLLVQSLKNKSMEMLVSLKIYLQDHSPLTEIHKY 1164

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKVVQVIHN 183
            F+NRQ Q++DK GKI L+F+R Q +IE+EITLD YPIS EI+FDLEHI GI KVV +I +
Sbjct: 1165 FQNRQVQHHDKHGKIDLVFVRLQEEIELEITLDQYPISLEISFDLEHIAGIMKVVPIIRD 1224

Query: 184  E 184
            E
Sbjct: 1225 E 1225


>gi|222148298|ref|YP_002549255.1| DNA polymerase III subunit alpha [Agrobacterium vitis S4]
 gi|221735286|gb|ACM36249.1| DNA polymerase III alpha chain [Agrobacterium vitis S4]
          Length = 1179

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V+ E++   +   +R+   +SLE+KS++M  +LRVYL+D SPLR +  +
Sbjct: 1070 LLESGKSLVITVAAEERP--EGIGLRIQTAQSLEEKSLQMQKTLRVYLRDSSPLRALAAH 1127

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
                   N    G +  + ++  G+ EIE+ L+  + I+PEIA  +    G+  V
Sbjct: 1128 L------NTKGDGLVSFVVIKEDGRREIEVELNQRFRITPEIAAAMRSAPGVVDV 1176


>gi|222085600|ref|YP_002544130.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter
            K84]
 gi|221723048|gb|ACM26204.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter
            K84]
          Length = 1187

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 8/106 (7%)

Query: 73   IVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNY 132
            +V +Q D+   +  S+RL   +SLE+KS++M  +LRVY++D  PL+ +  +       N 
Sbjct: 1086 VVTAQADERP-EGISLRLQTAQSLEEKSLQMQKALRVYVRDSGPLKAVAAHL------NA 1138

Query: 133  DKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               G +  I ++ +GK E+E+ L + Y I+PEIA  L    G+  V
Sbjct: 1139 KGDGLVSFIVIKEEGKREVEVVLAEKYRITPEIAAALRTAPGVIDV 1184


>gi|325292654|ref|YP_004278518.1| DNA polymerase III subunit alpha [Agrobacterium sp. H13-3]
 gi|325060507|gb|ADY64198.1| DNA polymerase III alpha subunit [Agrobacterium sp. H13-3]
          Length = 1166

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+   +SLE+KS++M  +LRVY++D  PL+ + ++
Sbjct: 1057 LLEVGKSLVITVQAEERP--EGIGLRIQTAQSLEEKSVQMQKALRVYVRDSGPLKTVARH 1114

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                   N    G +  I ++ +G  EIE+ L + Y ISPEIA  L    G+  V
Sbjct: 1115 L------NTKGDGSVYFIVIKDEGSREIEVELTEKYRISPEIAAALRSAPGVVDV 1163


>gi|241204110|ref|YP_002975206.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv.
            trifolii WSM1325]
 gi|240858000|gb|ACS55667.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
            trifolii WSM1325]
          Length = 1165

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +++  + E++   +   +R+  ++SLE+KS++M  +LRVY++D  PLR +  +
Sbjct: 1056 VLESGKSFVLTATGEERP--EGIGLRIQTIQSLEEKSLQMQKALRVYVRDSGPLRMVAGH 1113

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                   N    G +  I ++  GK E+E+ L + Y I+PEIA  L    G+  V
Sbjct: 1114 L------NAKGDGLVSFIVIKEDGKREVEVALSEKYRITPEIAAALRAAPGVVDV 1162


>gi|110633608|ref|YP_673816.1| DNA polymerase III subunit alpha [Mesorhizobium sp. BNC1]
 gi|110284592|gb|ABG62651.1| DNA polymerase III, alpha subunit [Chelativorans sp. BNC1]
          Length = 1172

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 65/115 (56%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   +  +I+VS ED+   +  ++R+  V+SLE ++  M  +LR+YL+D  P+  I   
Sbjct: 1063 LLEPGRSVVIMVSAEDRP--EGINLRIQTVQSLEAEASCMQKALRIYLRDPQPIAAISSQ 1120

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               R       +G++ LI ++  G+ EIEI L + Y ISP++A  +  ++G+  V
Sbjct: 1121 LTTR------GEGQVSLIVIKDGGRGEIEIGLPERYRISPQVAAAMRAVSGVVDV 1169


>gi|116251489|ref|YP_767327.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv. viciae
            3841]
 gi|115256137|emb|CAK07218.1| putative DNA polymerase III alpha subunit [Rhizobium leguminosarum
            bv. viciae 3841]
          Length = 1165

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +++  + E++   +   +R+  ++SLE+KS++M  +LRVY++D  PLR +  +
Sbjct: 1056 VLESGKSFVLTATGEERP--EGIGLRIQTIQSLEEKSLQMQKALRVYVRDSGPLRMVAGH 1113

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                   N    G +  I ++  GK E+E+ L + Y I+PEIA  L    G+  V
Sbjct: 1114 L------NAKGDGLVSFIVIKEDGKREVEVALSEKYRITPEIAAALRAAPGVVDV 1162


>gi|153009730|ref|YP_001370945.1| DNA polymerase III subunit alpha [Ochrobactrum anthropi ATCC 49188]
 gi|151561618|gb|ABS15116.1| DNA polymerase III, alpha subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 1163

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  +LR+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKALRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L H Y +SP+IA  ++ I G+  V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVDV 1160


>gi|17987420|ref|NP_540054.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M]
 gi|17983111|gb|AAL52318.1| DNA polymerase iii, alpha chain [Brucella melitensis bv. 1 str. 16M]
          Length = 1178

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1069 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1126

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L H Y +SP+IA  ++ I G+ +V
Sbjct: 1127 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1175


>gi|190891309|ref|YP_001977851.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652]
 gi|190696588|gb|ACE90673.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652]
          Length = 1165

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +++  + E++   +   +R+  ++SLE+KS++M  +LRVY++D  PL+ +  +
Sbjct: 1056 MLESGKSFLLTATGEERP--EGIGLRIQTIQSLEEKSLQMQKALRVYIRDSGPLKMVAGH 1113

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                   N    G +  I ++ +GK E+E+ L + Y I+PEIA  L    G+  V
Sbjct: 1114 L------NAKGDGLVSFIVIKEEGKREVEVALPEKYRITPEIAAALRAAPGVVDV 1162


>gi|254718932|ref|ZP_05180743.1| DNA polymerase III subunit alpha [Brucella sp. 83/13]
 gi|265983919|ref|ZP_06096654.1| DNA polymerase III subunit alpha [Brucella sp. 83/13]
 gi|306838837|ref|ZP_07471668.1| DNA polymerase III, alpha subunit [Brucella sp. NF 2653]
 gi|264662511|gb|EEZ32772.1| DNA polymerase III subunit alpha [Brucella sp. 83/13]
 gi|306406121|gb|EFM62369.1| DNA polymerase III, alpha subunit [Brucella sp. NF 2653]
          Length = 1163

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L H Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|254693562|ref|ZP_05155390.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya]
 gi|261213827|ref|ZP_05928108.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya]
 gi|260915434|gb|EEX82295.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya]
          Length = 1163

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L H Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|254689079|ref|ZP_05152333.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870]
 gi|256257328|ref|ZP_05462864.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68]
 gi|260754577|ref|ZP_05866925.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870]
 gi|260883604|ref|ZP_05895218.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68]
 gi|297248177|ref|ZP_06931895.1| DNA polymerase III subunit alpha [Brucella abortus bv. 5 str. B3196]
 gi|260674685|gb|EEX61506.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870]
 gi|260873132|gb|EEX80201.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68]
 gi|297175346|gb|EFH34693.1| DNA polymerase III subunit alpha [Brucella abortus bv. 5 str. B3196]
          Length = 1163

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L H Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|163843098|ref|YP_001627502.1| DNA polymerase III subunit alpha [Brucella suis ATCC 23445]
 gi|163673821|gb|ABY37932.1| DNA polymerase III, alpha subunit [Brucella suis ATCC 23445]
          Length = 1163

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L H Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|161618789|ref|YP_001592676.1| DNA polymerase III subunit alpha [Brucella canis ATCC 23365]
 gi|254704138|ref|ZP_05165966.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686]
 gi|256044502|ref|ZP_05447406.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str.
            Rev.1]
 gi|256060935|ref|ZP_05451093.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33]
 gi|256113358|ref|ZP_05454216.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str.
            Ether]
 gi|260563856|ref|ZP_05834342.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M]
 gi|260566613|ref|ZP_05837083.1| DNA polymerase III subunit alpha [Brucella suis bv. 4 str. 40]
 gi|261324935|ref|ZP_05964132.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33]
 gi|261754804|ref|ZP_05998513.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686]
 gi|265990926|ref|ZP_06103483.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str.
            Rev.1]
 gi|265994764|ref|ZP_06107321.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str.
            Ether]
 gi|161335600|gb|ABX61905.1| DNA polymerase III, alpha subunit [Brucella canis ATCC 23365]
 gi|260153872|gb|EEW88964.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M]
 gi|260156131|gb|EEW91211.1| DNA polymerase III subunit alpha [Brucella suis bv. 4 str. 40]
 gi|261300915|gb|EEY04412.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33]
 gi|261744557|gb|EEY32483.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686]
 gi|262765877|gb|EEZ11666.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str.
            Ether]
 gi|263001710|gb|EEZ14285.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str.
            Rev.1]
 gi|326408847|gb|ADZ65912.1| DNA polymerase III subunit alpha [Brucella melitensis M28]
 gi|326538562|gb|ADZ86777.1| DNA polymerase III, alpha subunit [Brucella melitensis M5-90]
          Length = 1163

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L H Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|306843761|ref|ZP_07476360.1| DNA polymerase III, alpha subunit [Brucella sp. BO1]
 gi|306275952|gb|EFM57665.1| DNA polymerase III, alpha subunit [Brucella sp. BO1]
          Length = 1163

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L H Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|294852181|ref|ZP_06792854.1| DNA polymerase III subunit alpha [Brucella sp. NVSL 07-0026]
 gi|294820770|gb|EFG37769.1| DNA polymerase III subunit alpha [Brucella sp. NVSL 07-0026]
          Length = 1188

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1079 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1136

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L H Y +SP+IA  ++ I G+ +V
Sbjct: 1137 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1185


>gi|256369256|ref|YP_003106764.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915]
 gi|255999416|gb|ACU47815.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915]
          Length = 1163

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L H Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|237815260|ref|ZP_04594258.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A]
 gi|237790097|gb|EEP64307.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A]
          Length = 1190

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1081 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1138

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L H Y +SP+IA  ++ I G+ +V
Sbjct: 1139 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1187


>gi|225852339|ref|YP_002732572.1| DNA polymerase III subunit alpha [Brucella melitensis ATCC 23457]
 gi|256264162|ref|ZP_05466694.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 2 str.
            63/9]
 gi|225640704|gb|ACO00618.1| DNA polymerase III, alpha subunit [Brucella melitensis ATCC 23457]
 gi|263094380|gb|EEZ18225.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 2 str.
            63/9]
          Length = 1163

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L H Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|23501712|ref|NP_697839.1| DNA polymerase III subunit alpha [Brucella suis 1330]
 gi|23347636|gb|AAN29754.1| DNA polymerase III, alpha subunit [Brucella suis 1330]
          Length = 1163

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L H Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|306841939|ref|ZP_07474617.1| DNA polymerase III, alpha subunit [Brucella sp. BO2]
 gi|306287972|gb|EFM59380.1| DNA polymerase III, alpha subunit [Brucella sp. BO2]
          Length = 1163

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L H Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|148559880|ref|YP_001258802.1| DNA polymerase III subunit alpha [Brucella ovis ATCC 25840]
 gi|148371137|gb|ABQ61116.1| DNA polymerase III, alpha subunit [Brucella ovis ATCC 25840]
          Length = 1163

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L H Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|254701591|ref|ZP_05163419.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513]
 gi|261752144|ref|ZP_05995853.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513]
 gi|261741897|gb|EEY29823.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513]
          Length = 1163

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMRKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L H Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|227821642|ref|YP_002825612.1| DNA polymerase III subunit alpha [Sinorhizobium fredii NGR234]
 gi|227340641|gb|ACP24859.1| DNA polymerase III, alpha subunit [Sinorhizobium fredii NGR234]
          Length = 1165

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  ++ V  E++   +   +R+  + SLE++S++M  +LRVY++D  PLR I  +
Sbjct: 1056 LLEAGKSLVMTVDAEERP--EGIGLRIRTLRSLEEESLQMQKALRVYVRDSGPLRSIASH 1113

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                   N    G +  I ++  G+ EIE+ L + Y ISPEIA  L    G+  V
Sbjct: 1114 L------NAKGDGLVSFIVIKDNGQREIEVELSEKYRISPEIAAALRSAPGVVDV 1162


>gi|62289774|ref|YP_221567.1| DNA polymerase III subunit alpha [Brucella abortus bv. 1 str. 9-941]
 gi|82699702|ref|YP_414276.1| DNA polymerase III subunit alpha [Brucella melitensis biovar Abortus
            2308]
 gi|189024017|ref|YP_001934785.1| DNA polymerase III subunit alpha [Brucella abortus S19]
 gi|254697213|ref|ZP_05159041.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str.
            86/8/59]
 gi|254730110|ref|ZP_05188688.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292]
 gi|260545478|ref|ZP_05821219.1| DNA polymerase III subunit alpha subunit [Brucella abortus NCTC 8038]
 gi|260757800|ref|ZP_05870148.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292]
 gi|260761623|ref|ZP_05873966.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str.
            86/8/59]
 gi|62195906|gb|AAX74206.1| DnaE-2, DNA polymerase III, alpha subunit [Brucella abortus bv. 1
            str. 9-941]
 gi|82615803|emb|CAJ10801.1| Phosphoesterase PHP, N-terminal:PHP domain C-terminal region:OB-fold
            nucleic acid binding domain:DNA polymerase III alpha sub
            [Brucella melitensis biovar Abortus 2308]
 gi|189019589|gb|ACD72311.1| DNA polymerase III subunit alpha [Brucella abortus S19]
 gi|260096885|gb|EEW80760.1| DNA polymerase III subunit alpha subunit [Brucella abortus NCTC 8038]
 gi|260668118|gb|EEX55058.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292]
 gi|260672055|gb|EEX58876.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str.
            86/8/59]
          Length = 1163

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L H Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|209548886|ref|YP_002280803.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv.
            trifolii WSM2304]
 gi|209534642|gb|ACI54577.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
            trifolii WSM2304]
          Length = 1165

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +++  + E++   +   +R+  ++SLE+KS++M  +LRVY++D  PL+ +  +
Sbjct: 1056 VLESGKSFVLTATGEERP--EGIGLRVQTIQSLEEKSLQMQKALRVYVRDSGPLKMVAGH 1113

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               R        G +  I ++ +GK E+E+ L + Y I+PEIA  L    G+  V
Sbjct: 1114 LNAR------GDGLVSFIVIKEEGKREVEVALAEKYRITPEIAAALRAAPGVVDV 1162


>gi|260168558|ref|ZP_05755369.1| DNA polymerase III subunit alpha [Brucella sp. F5/99]
 gi|261758031|ref|ZP_06001740.1| DNA polymerase III subunit alpha [Brucella sp. F5/99]
 gi|261738015|gb|EEY26011.1| DNA polymerase III subunit alpha [Brucella sp. F5/99]
          Length = 1163

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L H Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQHEVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|254713932|ref|ZP_05175743.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1]
 gi|254717010|ref|ZP_05178821.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1]
 gi|261218817|ref|ZP_05933098.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1]
 gi|261321684|ref|ZP_05960881.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1]
 gi|260923906|gb|EEX90474.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1]
 gi|261294374|gb|EEX97870.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1]
          Length = 1163

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L H Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQHEVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|254706961|ref|ZP_05168789.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10]
 gi|254709931|ref|ZP_05171742.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94]
 gi|256031424|ref|ZP_05445038.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1]
 gi|256159545|ref|ZP_05457313.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1]
 gi|256254832|ref|ZP_05460368.1| DNA polymerase III subunit alpha [Brucella ceti B1/94]
 gi|261222013|ref|ZP_05936294.1| DNA polymerase III subunit alpha [Brucella ceti B1/94]
 gi|261314424|ref|ZP_05953621.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10]
 gi|261317477|ref|ZP_05956674.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94]
 gi|265988513|ref|ZP_06101070.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1]
 gi|265997977|ref|ZP_06110534.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1]
 gi|260920597|gb|EEX87250.1| DNA polymerase III subunit alpha [Brucella ceti B1/94]
 gi|261296700|gb|EEY00197.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94]
 gi|261303450|gb|EEY06947.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10]
 gi|262552445|gb|EEZ08435.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1]
 gi|264660710|gb|EEZ30971.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1]
          Length = 1163

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L H Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQHEVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|225627320|ref|ZP_03785357.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo]
 gi|225617325|gb|EEH14370.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo]
          Length = 1190

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1081 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1138

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L H Y +SP+IA  ++ I G+ +V
Sbjct: 1139 FNTR------GDGQVSLIVIKDNGQHEVEIELPHRYRVSPQIASAMKAIQGVVEV 1187


>gi|327194832|gb|EGE61666.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CNPAF512]
          Length = 1165

 Score = 57.4 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +++  + E++   +   +R+  ++SLE+KS++M  +LRVY++D  PL+ +  +
Sbjct: 1056 MLESGKSFLLTATGEERP--EGIGLRIQTIQSLEEKSLQMQKALRVYVRDSGPLKMVAGH 1113

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                   N    G +  I ++ +GK E+E+ L + Y I+PEIA  L    G+  V
Sbjct: 1114 L------NAKGDGLVSFIVIKEEGKREVEVALPEKYRITPEIAAALRAAPGVVDV 1162


>gi|218513825|ref|ZP_03510665.1| DNA polymerase III subunit alpha [Rhizobium etli 8C-3]
          Length = 86

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 7/86 (8%)

Query: 93  VESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIE 152
           ++SLE+KS++M  +LRVY++D  PL+ +  +       N    G +  I ++ +GK E+E
Sbjct: 4   IQSLEEKSLQMQKALRVYIRDSGPLKMVAGHL------NAKGDGLVSFIVIKEEGKREVE 57

Query: 153 ITL-DHYPISPEIAFDLEHITGITKV 177
           + L + Y I+PEIA  L    G+  V
Sbjct: 58  VALPEKYRITPEIAAALRAAPGVVDV 83


>gi|15888619|ref|NP_354300.1| DNA polymerase III subunit alpha [Agrobacterium tumefaciens str. C58]
 gi|15156343|gb|AAK87085.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58]
          Length = 1167

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+   +SLE+KS++M  +LRVY++D  PL+ + ++
Sbjct: 1058 LLEVGKSLVINVQAEERP--EGIGLRIQTAQSLEEKSVQMQKALRVYVRDSGPLKTVARH 1115

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                   N    G +  I ++ +G  EIE+ L + Y ISPEIA  L    G+  V
Sbjct: 1116 L------NTKGDGSVYFIVIKDEGSREIEVELTEKYRISPEIAAALRSAPGVVDV 1164


>gi|150396144|ref|YP_001326611.1| DNA polymerase III subunit alpha [Sinorhizobium medicae WSM419]
 gi|150027659|gb|ABR59776.1| DNA polymerase III, alpha subunit [Sinorhizobium medicae WSM419]
          Length = 1165

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  ++ V  E++   +   +R+  + SLE++S++M  +LRVY++D  PLR I  +
Sbjct: 1056 LLEAGKSLVMTVDAEERP--EGIGLRIRTLRSLEEESLQMQKALRVYVRDCGPLRSIASH 1113

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               R        G +  I ++  G+ EIE+ L + Y ISPEIA  L    G+  V
Sbjct: 1114 LNAR------GDGLVSFIVIKDNGQREIEVELSEKYRISPEIAAALRSAPGVVDV 1162


>gi|15965042|ref|NP_385395.1| DNA polymerase III subunit alpha [Sinorhizobium meliloti 1021]
 gi|307301114|ref|ZP_07580883.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C]
 gi|15074221|emb|CAC45868.1| Probable DNA polymerase III, alpha chain [Sinorhizobium meliloti
            1021]
 gi|306904069|gb|EFN34655.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C]
          Length = 1169

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  ++ V  E++   +   +R+  + SLE++S++M  +LRVY++D  PLR I  +
Sbjct: 1060 LLEPGKSLVMTVDAEERP--EGIGLRIRTLRSLEEESLQMQKALRVYVRDCGPLRSIASH 1117

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
                   N    G +  I ++  G+ EIE+ L+  Y ISPEIA  L    G+  V
Sbjct: 1118 L------NAKGDGLVSFIVIKDNGQREIEVELNEKYRISPEIAAALRSAPGVVDV 1166


>gi|307317847|ref|ZP_07597285.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83]
 gi|306896609|gb|EFN27357.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83]
          Length = 1169

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  ++ V  E++   +   +R+  + SLE++S++M  +LRVY++D  PLR I  +
Sbjct: 1060 LLEPGKSLVMTVDAEERP--EGIGLRIRTLRSLEEESLQMQKALRVYVRDCGPLRSIASH 1117

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
                   N    G +  I ++  G+ EIE+ L+  Y ISPEIA  L    G+  V
Sbjct: 1118 L------NAKGDGLVSFIVIKDNGQREIEVELNEKYRISPEIAAALRSAPGVVDV 1166


>gi|158423315|ref|YP_001524607.1| DNA polymerase III subunit alpha [Azorhizobium caulinodans ORS 571]
 gi|158330204|dbj|BAF87689.1| DNA polymerase III alpha subunit [Azorhizobium caulinodans ORS 571]
          Length = 1144

 Score = 50.8 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 8/115 (6%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL    P +++V+ E  L  +   +R+   E L++ +     +LR+++    PL  I   
Sbjct: 1034 LLEPGTPVLMMVAAE--LQGEDVRVRIQSCERLDEATARHHKNLRIFVNSTEPLTGI--- 1088

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
              +R+       G++ L+ L   GK E+EI LD  YP+SP+IA  ++ I G+  V
Sbjct: 1089 --SRRLSGGKGDGEVSLVLLMDGGKAEVEIRLDGRYPVSPQIAGAIKAIPGVVAV 1141


>gi|163759322|ref|ZP_02166408.1| DNA polymerase III subunit alpha [Hoeflea phototrophica DFL-43]
 gi|162283726|gb|EDQ34011.1| DNA polymerase III subunit alpha [Hoeflea phototrophica DFL-43]
          Length = 1189

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+   ESLE ++     +LRV+++D  P+  +  +
Sbjct: 1080 LLEPGKSIVITVLAEERP--EGVGLRIQTAESLEDRAARGQTALRVFVRDAKPINSVSTH 1137

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
             + R       +G++  I ++  G  EIE+TL D Y ISP++A  L+   G+  V
Sbjct: 1138 LKAR------GEGQVSFIMIKDGGCREIEVTLADRYKISPQMAAALKAAPGVLDV 1186


>gi|90419565|ref|ZP_01227475.1| DNA polymerase III alpha subunit [Aurantimonas manganoxydans
            SI85-9A1]
 gi|90336502|gb|EAS50243.1| DNA polymerase III alpha subunit [Aurantimonas manganoxydans
            SI85-9A1]
          Length = 1153

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 7/92 (7%)

Query: 87   SIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146
            S R+  V+SLE +++ M  +LRV+++D +PL+        R     D   +I L+ +R  
Sbjct: 1065 SFRVQSVQSLEDEAVRMQKALRVFMRDANPLQAF------RSQLRADGDSEISLVLVRDG 1118

Query: 147  GKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
            G+ E+EITL   Y +SP++A  ++   G+  V
Sbjct: 1119 GEREVEITLPGRYRVSPQMASVVKAAPGVLDV 1150


>gi|328543710|ref|YP_004303819.1| DNA polymerase III subunit alpha [Polymorphum gilvum SL003B-26A1]
 gi|326413454|gb|ADZ70517.1| DNA polymerase III subunit alpha [Polymorphum gilvum SL003B-26A1]
          Length = 1146

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 9/114 (7%)

Query: 65   LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYF 124
            L   +  +I+VS +  +     S+R+  V+ +E  +  +  SLRV+L+D  PL+ + +  
Sbjct: 1038 LEPGRSVVILVSAD--MRDDEPSLRVEQVDPIEAVATRVQKSLRVFLRDERPLKSLARQL 1095

Query: 125  ENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
              R        G++ ++ L   G+ E+E+ L   Y +SPEIA  L+ + G+T V
Sbjct: 1096 GGR------GDGEVNVVVLLDGGRREVEVKLPGRYRLSPEIAGALKAVPGVTDV 1143


>gi|114707392|ref|ZP_01440289.1| DNA polymerase III subunit alpha [Fulvimarina pelagi HTCC2506]
 gi|114537273|gb|EAU40400.1| DNA polymerase III subunit alpha [Fulvimarina pelagi HTCC2506]
          Length = 1151

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 8/116 (6%)

Query: 63   RLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHK 122
            R + E    +IV +Q ++   +  S R   V+SLE +++ M  +LR++L+D +P+     
Sbjct: 1040 RDVMEPGASVIVTAQAEERP-EGVSFRASNVQSLEDEAVRMQKALRIFLRDENPI----D 1094

Query: 123  YFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
             F++    N D +  + ++ LR  G  E+EI L D Y +SP+IA  ++   G+  V
Sbjct: 1095 AFQSHLQPNGDSE--VSIVLLRDDGGREVEIMLADKYRVSPQIASAIKAAHGVVDV 1148


>gi|218659790|ref|ZP_03515720.1| DNA polymerase III subunit alpha [Rhizobium etli IE4771]
          Length = 248

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 8/92 (8%)

Query: 64  LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
           +L   K +++  + E++   +   +R+  ++SLE+KS++M  +LRVY++D  PL+ +  +
Sbjct: 160 MLESGKSFLLTATGEERP--EGIGLRIQTIQSLEEKSLQMQKALRVYIRDSGPLKMVAGH 217

Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL 155
                  N    G +  I ++ +GK E+E+ L
Sbjct: 218 L------NAKGDGLVSFIVIKEEGKREVEVAL 243


>gi|218459887|ref|ZP_03499978.1| DNA polymerase III subunit alpha [Rhizobium etli Kim 5]
          Length = 74

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 102 EMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPI 160
           +M  +LRVY++D  PL+ +  +       N    G +  I ++ +GK E+E+ L + Y I
Sbjct: 1   QMQKALRVYIRDSGPLKMVAGHL------NAKGDGLVSFIVIKEEGKREVEVALPEKYRI 54

Query: 161 SPEIAFDLEHITGITKV 177
           +PEIA  L    G+  V
Sbjct: 55  TPEIAAALRAAPGVVDV 71


>gi|86357261|ref|YP_469153.1| DNA polymerase III subunit alpha [Rhizobium etli CFN 42]
 gi|86281363|gb|ABC90426.1| DNA polymerase III alpha subunit protein [Rhizobium etli CFN 42]
          Length = 1165

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 8/92 (8%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +++  + E++   +   +R+  ++SLE+KS++M  +LRVY++D  PL+ +  +
Sbjct: 1056 VLESGKSFLLTATGEERP--EGIGLRIQTIQSLEEKSLQMQKALRVYIRDSGPLKMVAGH 1113

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL 155
                   N    G +  I ++ +GK E+E+ L
Sbjct: 1114 L------NAKGDGLVSFIVIKEEGKREVEVAL 1139


>gi|154248204|ref|YP_001419162.1| DNA polymerase III subunit alpha [Xanthobacter autotrophicus Py2]
 gi|154162289|gb|ABS69505.1| DNA polymerase III, alpha subunit [Xanthobacter autotrophicus Py2]
          Length = 1150

 Score = 45.8 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 60/115 (52%), Gaps = 4/115 (3%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL    P +++V+ E  L+ +   +R+   E L+  +      LR++L+   P+  I + 
Sbjct: 1036 LLEPGTPLLMMVAAE--LNGEDVRVRINSCEKLDPVTARHQKGLRIFLRSPEPIEGIARR 1093

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
              + +T +    G++ LI +    + E+E++L   YPISP+IA  ++ I G+  +
Sbjct: 1094 LADGKTVDAG-SGEVSLILMVEDARAEVEVSLPGKYPISPQIAGAIKAIPGVVAI 1147


>gi|13471011|ref|NP_102580.1| DNA polymerase III subunit alpha [Mesorhizobium loti MAFF303099]
 gi|14021755|dbj|BAB48366.1| DNA polymerase III alpha subunit [Mesorhizobium loti MAFF303099]
          Length = 1175

 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   +  +I V+ ED+   +  ++R+  V+SLE+++  +  +LR+++++  P   I   
Sbjct: 1066 LLEAGRSVVITVAAEDRP--EGVNLRINSVQSLEEEASRIQKALRIFVRNEGPASIIQSQ 1123

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
               R       + ++ +I ++ + + E+EI L   Y +SP+IA  +  + G+ +V
Sbjct: 1124 LTQR------GESQVSIIVIKEEAQGEVEIALQGGYRVSPQIASAMRAVPGVVEV 1172


>gi|296447359|ref|ZP_06889286.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b]
 gi|296255138|gb|EFH02238.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b]
          Length = 1150

 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 7/93 (7%)

Query: 89   RLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGK 148
            R+  VE L     +    LR++L+D +PL +I      R       +G++ L+    +G 
Sbjct: 1064 RITAVEPLAAAVAKTQKGLRIFLRDAAPLDKIKSRLSAR------GEGEVSLVVSLERGA 1117

Query: 149  IEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180
             E+EI L   Y +SP++A  L+ I G+T V  V
Sbjct: 1118 SEVEIKLPGGYTVSPDMAGALQTIPGVTAVEHV 1150


>gi|260463915|ref|ZP_05812111.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum
            WSM2075]
 gi|259030290|gb|EEW31570.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum
            WSM2075]
          Length = 1175

 Score = 44.3 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 61/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   +  +I V+ ED+   +  ++R+  V+SLE ++  +  +LR+++++  P   I   
Sbjct: 1066 LLEAGRSVVITVAAEDRP--EGVNLRINSVQSLEDEASRIQKALRIFVRNDGPASMIQSQ 1123

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
               R       + ++ +I ++ + + E+EI L   Y +SP+IA  +  + G+ +V
Sbjct: 1124 LTQR------GESQVSIIVIKDEAQGEVEIALQGGYRVSPQIASAMRAVPGVVEV 1172


>gi|240850744|ref|YP_002972144.1| DNA polymerase III subunit alpha [Bartonella grahamii as4aup]
 gi|240267867|gb|ACS51455.1| DNA polymerase III subunit alpha [Bartonella grahamii as4aup]
          Length = 1164

 Score = 44.3 bits (103), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +II VS E++   +  S+R+  ++SLE++S++    +R++++    L +I   
Sbjct: 1055 MLEPGKSFIITVSAENRS--EGVSLRIETIQSLEQESLKQHKMMRLFIKTVDMLPQIE-- 1110

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                Q  N    G++GLI ++  G  E+EI L   Y ++  +A  ++ I G+  V
Sbjct: 1111 ----QNLNLGGNGEVGLILIQEDGLREVEIALPKRYKVNSHVANAMKLIQGVVDV 1161


>gi|170744048|ref|YP_001772703.1| DNA polymerase III subunit alpha [Methylobacterium sp. 4-46]
 gi|168198322|gb|ACA20269.1| DNA polymerase III, alpha subunit [Methylobacterium sp. 4-46]
          Length = 1168

 Score = 44.3 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 89   RLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGK 148
            R+   E L++        +R+YL+D  P+  + +    R       +G++ LI +   G+
Sbjct: 1082 RIQTCEPLDQAVARYQKGMRIYLRDERPIPSVQQRLTTR------GEGEVSLILILDGGE 1135

Query: 149  IEIEITL-DHYPISPEIAFDLEHITGITKV 177
             E+E+ L D Y  SP+IA  L  + G+ +V
Sbjct: 1136 REVEVKLRDRYQASPQIAGALRAVPGVVQV 1165


>gi|163868512|ref|YP_001609721.1| DNA polymerase III subunit alpha [Bartonella tribocorum CIP 105476]
 gi|161018168|emb|CAK01726.1| DNA polymerase III alpha subunit [Bartonella tribocorum CIP 105476]
          Length = 1155

 Score = 43.9 bits (102), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 61/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +II VS E++   +  S+R+  ++SLE ++++    +R++++    L +I   
Sbjct: 1046 MLEPGKSFIITVSAENRS--EGASLRIETIQSLENEALQQHKMMRLFIKTVDMLPQI--- 1100

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                Q  N    G++GLI ++  G  E+EI L   Y ++  +A  ++ I G+  V
Sbjct: 1101 ---EQNLNLGGNGEVGLILIQEDGLREVEIALPKRYKVNSHVANAMKLIQGVVDV 1152


>gi|49475735|ref|YP_033776.1| DNA polymerase III subunit alpha [Bartonella henselae str. Houston-1]
 gi|49238542|emb|CAF27778.1| DNA polymerase III alpha subunit [Bartonella henselae str. Houston-1]
          Length = 1162

 Score = 43.9 bits (102), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +II VS E++   +  S+RL   +SLEK++ +    +R++++    L +I   
Sbjct: 1053 ILELGKSFIITVSAENRS--EGVSLRLETAQSLEKEAAQHHKMMRLFIKTVDMLPQI--- 1107

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               +Q  N    G++ LI ++  G  E+EITL   Y ++  +A  L+ I G+  V
Sbjct: 1108 ---QQNLNPSGNGEVALILIQEDGLREVEITLPKRYKVNSRVASALKSIQGVVDV 1159


>gi|118590015|ref|ZP_01547419.1| DNA polymerase III subunit alpha [Stappia aggregata IAM 12614]
 gi|118437512|gb|EAV44149.1| DNA polymerase III subunit alpha [Stappia aggregata IAM 12614]
          Length = 1154

 Score = 43.9 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 7/92 (7%)

Query: 87   SIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146
            S+R+  V+ +++ +  +  S+RV+++D  P+  + K  + R       +G + +I L   
Sbjct: 1066 SLRIEQVDPIDQMAARLQKSMRVFVRDERPIPSLAKQLQVR------GEGDVTVIVLLEN 1119

Query: 147  GKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
            G  E+E+ L   + +SPEIA  L+ + G+T V
Sbjct: 1120 GAREVEVKLPGRFRLSPEIAGALKAVPGVTDV 1151


>gi|319407174|emb|CBI80813.1| DNA polymerase III alpha subunit [Bartonella sp. 1-1C]
          Length = 1140

 Score = 42.7 bits (99), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +II V  ED+   +  S+R+  ++SLE+++++    +R++L+    L +I   
Sbjct: 1031 MLELGKSFIITVIAEDRS--EGISLRIETIQSLEEQALQCHKMMRIFLKTIDTLSQIE-- 1086

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                Q  N + +G++ LI ++  G  E+EI L + Y ++  +   ++ ++G+  V
Sbjct: 1087 ----QNLNSEGKGEVALILIQEDGLREVEIALPERYKVNAHVVNAIKVLSGVVDV 1137


>gi|49474348|ref|YP_032390.1| DNA polymerase III subunit alpha [Bartonella quintana str. Toulouse]
 gi|49239852|emb|CAF26246.1| DNA polymerase III alpha subunit [Bartonella quintana str. Toulouse]
          Length = 1162

 Score = 42.4 bits (98), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +II VS E++   +  S+RL   +SLE ++ +    +R++++    L +I   
Sbjct: 1053 MLEPGKSFIITVSAENRS--EGVSLRLETAQSLENEAAQHHKMMRLFIKTVDMLPQIE-- 1108

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                Q  N +  G++GLI ++  G  E+EITL   Y +   +   ++ I G+  V
Sbjct: 1109 ----QNLNPNGNGEVGLILIQEDGLREVEITLPKRYKVDSSVVSAMKSIHGVVDV 1159


>gi|307942140|ref|ZP_07657491.1| DNA polymerase III subunit alpha [Roseibium sp. TrichSKD4]
 gi|307774426|gb|EFO33636.1| DNA polymerase III subunit alpha [Roseibium sp. TrichSKD4]
          Length = 1159

 Score = 42.4 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 7/94 (7%)

Query: 85   RDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLR 144
            + SIR+  V+ ++K +  +  S+ V+L+D  P+  + ++ + R       +G + +I   
Sbjct: 1069 KPSIRIEQVDPIDKVAANLQKSMMVFLRDERPVESLVRHLKVR------GEGNVTVIVQL 1122

Query: 145  SQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
             +G+ E+E+ L   Y +SPEIA  L+ + G+  V
Sbjct: 1123 DRGQREVEVKLPGRYRLSPEIAGALKAVPGVMDV 1156


>gi|220927035|ref|YP_002502337.1| DNA polymerase III subunit alpha [Methylobacterium nodulans ORS 2060]
 gi|219951642|gb|ACL62034.1| DNA polymerase III, alpha subunit [Methylobacterium nodulans ORS
            2060]
          Length = 1158

 Score = 42.4 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 89   RLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGK 148
            R+   E L++        +R+YL+D  P+  + +    R       +G++ LI +   G+
Sbjct: 1072 RIQTCEPLDQAVARHQKGMRIYLRDERPIASVQQRLTMR------GEGEVSLILILDGGE 1125

Query: 149  IEIEITL-DHYPISPEIAFDLEHITGITKV 177
             E+EI L D Y  +P+IA  L  + G+ +V
Sbjct: 1126 REVEIRLKDRYQATPQIAGALRAVPGVVQV 1155


>gi|319404155|emb|CBI77748.1| DNA polymerase III alpha subunit [Bartonella rochalimae ATCC
            BAA-1498]
          Length = 1162

 Score = 41.6 bits (96), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +II V  ED+   +  S+R+  ++SLE+++++    +R++L+    L +I   
Sbjct: 1053 MLEPGKSFIITVVAEDRS--EGISLRIETIQSLEEQALQCHKMMRIFLKTIDMLPQIE-- 1108

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                Q  N + +G++ L+ ++  G  E+EI L + Y ++  +   ++ ++G+  V
Sbjct: 1109 ----QNLNSEGKGEVALVLIQEDGLREVEIALPERYKVNAHVVNAIKVLSGVVDV 1159


>gi|209885082|ref|YP_002288939.1| DNA polymerase III subunit alpha [Oligotropha carboxidovorans OM5]
 gi|209873278|gb|ACI93074.1| DNA polymerase III subunit alpha [Oligotropha carboxidovorans OM5]
          Length = 1157

 Score = 41.6 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 6/94 (6%)

Query: 89   RLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQ----TQNYDKQGKIGLIFLR 144
            R+  VE L++ + +   +L+++L+D  PL  I +  E+        +  + G++ L+ + 
Sbjct: 1062 RIANVELLDQAAAKTSMALKIFLRDDKPLESIRRRLEDHARGGGAGSSARAGEVTLVMML 1121

Query: 145  SQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               + E+E+ L D Y +SP+IA  L+ ITG+  V
Sbjct: 1122 DL-ETEVEMRLRDRYKVSPQIAGALKAITGVVDV 1154


>gi|254505207|ref|ZP_05117358.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia
            alexandrii DFL-11]
 gi|222441278|gb|EEE47957.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia
            alexandrii DFL-11]
          Length = 1138

 Score = 40.4 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 7/86 (8%)

Query: 93   VESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIE 152
            V+ ++K +  +  S+RV+++D  P+  + K    R       +G + +I L   G  E+E
Sbjct: 1056 VDPIDKVAARLQKSMRVFVRDDRPIASLAKQLTVR------GEGDVTVIVLLENGAREVE 1109

Query: 153  ITL-DHYPISPEIAFDLEHITGITKV 177
            + L   + +SPEIA  L+ + G+T V
Sbjct: 1110 VKLPGRFRLSPEIAGALKAVPGVTDV 1135


>gi|121602736|ref|YP_989159.1| DNA polymerase III subunit alpha [Bartonella bacilliformis KC583]
 gi|120614913|gb|ABM45514.1| DNA polymerase III, alpha subunit [Bartonella bacilliformis KC583]
          Length = 1161

 Score = 40.4 bits (93), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +II VS E++   +  S+RL   +SLE+++++    +R+++     L +I   
Sbjct: 1052 MLEPGKSFIITVSAENRS--EGISLRLETAQSLEEEAVQHHKMMRLFINTVDILSQIE-- 1107

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                Q  N    G++G++ ++  G  E+E+ L   Y +S  +A  ++ + G+  V
Sbjct: 1108 ----QNLNSGGNGEVGIVLIQENGSREVEVLLPKRYKVSLNVARAIKTLHGVLDV 1158


>gi|91977328|ref|YP_569987.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisB5]
 gi|91683784|gb|ABE40086.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisB5]
          Length = 1151

 Score = 40.4 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 89   RLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIF-LRSQG 147
            R+L  E L+  + +    LR++L+D  PL  I K  +  +T+     G I L+  L  Q 
Sbjct: 1062 RVLHAEPLDAAAAKTQKGLRIFLRDTKPLDSISKRLQPPETKV--AGGNIALVLRLDPQT 1119

Query: 148  KIEIEITLDHYPISPEIAFDLEHITGITKV 177
            ++E EI    + +SP+IA  ++ + G+  V
Sbjct: 1120 EVEFEIP-GRFQVSPQIAGAIKAVIGVEHV 1148


>gi|254469239|ref|ZP_05082644.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio
            sp. JE062]
 gi|211961074|gb|EEA96269.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio
            sp. JE062]
          Length = 1144

 Score = 39.7 bits (91), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 14/119 (11%)

Query: 63   RLLREKKPYIIVVSQEDKLSLQRD---SIRLLWVESLEKKSMEMLDSLRVYLQDRSPLRE 119
            R L E    ++++ Q D     RD   S+R+  VE LEK +  +  +LR++L    P+  
Sbjct: 1033 RDLLEPGASVVLLVQAD----MRDEEVSVRISQVEPLEKVAGRVHRTLRIFLGSDEPIAS 1088

Query: 120  IHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
            + +             G++  + L   G+ E+E+ L  +Y +SP+++  L+ + G+  V
Sbjct: 1089 LQRQLRR------GGDGEVSCVVLLDDGQREVEVKLPGNYQLSPQLSGALKTLPGVMDV 1141


>gi|316933919|ref|YP_004108901.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris DX-1]
 gi|315601633|gb|ADU44168.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris DX-1]
          Length = 1151

 Score = 39.7 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 4/90 (4%)

Query: 89   RLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIF-LRSQG 147
            R+L  E L+  + +    LR++L+D  PL  + K  +  +++     G + L+  L  Q 
Sbjct: 1062 RVLHAEPLDAAAAKTQKGLRIFLRDTKPLESLTKRLQPPESRA--AGGNVALVLRLDPQT 1119

Query: 148  KIEIEITLDHYPISPEIAFDLEHITGITKV 177
            ++E EI    + +SP+IA  ++ ++G+  V
Sbjct: 1120 EVEFEIP-GRFQVSPQIAGAIKAVSGVEHV 1148


>gi|323136417|ref|ZP_08071499.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242]
 gi|322398491|gb|EFY01011.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242]
          Length = 1153

 Score = 39.3 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 7/90 (7%)

Query: 89   RLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGK 148
            R++ VE L   +      LR+ ++D+SPL  I    +N+ T     +G++ L+  R    
Sbjct: 1067 RIVAVEPLANAAARAQKGLRIVVRDQSPLDRI----KNKLTGK--GEGEVSLLIKRDVAP 1120

Query: 149  IEIEITL-DHYPISPEIAFDLEHITGITKV 177
             EIEI L   YP++ ++A  L  I G+  V
Sbjct: 1121 EEIEIRLPGSYPVNAQVASALRAIPGVVDV 1150


>gi|86749719|ref|YP_486215.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris HaA2]
 gi|86572747|gb|ABD07304.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris HaA2]
          Length = 1151

 Score = 39.3 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 89   RLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGK 148
            R+L  E L+  + +    LR++L+D  PL  I K  +  +++     G I L+ LR    
Sbjct: 1062 RVLHAEPLDAAAAKTQKGLRIFLRDTKPLDSITKRLQPPESKV--SGGNIALV-LRLDPH 1118

Query: 149  IEIEITL-DHYPISPEIAFDLEHITGITKV 177
             E+E  L   + +SP+IA  ++ +TG+  V
Sbjct: 1119 TEVEFELPGRFQVSPQIAGAIKAVTGVELV 1148


>gi|254560015|ref|YP_003067110.1| DNA polymerase III subunit alpha [Methylobacterium extorquens DM4]
 gi|254267293|emb|CAX23125.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens DM4]
          Length = 1173

 Score = 38.9 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   +P ++ +  +  L  +    R+   E L++ +      +R++L+D   L  + + 
Sbjct: 1064 ILEPGRPLVLTI--QANLEGEDVRARITTAEPLDQAAARHQKGMRIFLRDDRALSSVQQR 1121

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               R       +G++ LI +   G+ E+E+ L D Y  +P++A  L  + G+ +V
Sbjct: 1122 LTLR------GEGEVSLILILDGGEREVEVRLKDRYQATPQVAGALRAVPGVVQV 1170


>gi|188580262|ref|YP_001923707.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001]
 gi|179343760|gb|ACB79172.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001]
          Length = 1173

 Score = 38.9 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   +P ++ +  +  L  +    R+   E L++ +      +R++L+D   L  + + 
Sbjct: 1064 ILEPGRPLVLTI--QANLEGEDVRARITTAEPLDQAAARHQKGMRIFLRDDRALSSVQQR 1121

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               R       +G++ LI +   G+ E+E+ L D Y  +P++A  L  + G+ +V
Sbjct: 1122 LTLR------GEGEVSLILILDGGEREVEVRLKDRYQATPQVAGALRAVPGVVQV 1170


>gi|163850481|ref|YP_001638524.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1]
 gi|240137543|ref|YP_002962014.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1]
 gi|163662086|gb|ABY29453.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1]
 gi|240007511|gb|ACS38737.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1]
          Length = 1173

 Score = 38.9 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   +P ++ +  +  L  +    R+   E L++ +      +R++L+D   L  + + 
Sbjct: 1064 ILEPGRPLVLTI--QANLEGEDVRARITTAEPLDQAAARHQKGMRIFLRDDRALSSVQQR 1121

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               R       +G++ LI +   G+ E+E+ L D Y  +P++A  L  + G+ +V
Sbjct: 1122 LTLR------GEGEVSLILILDGGEREVEVRLKDRYQATPQVAGALRAVPGVVQV 1170


>gi|218529177|ref|YP_002419993.1| DNA polymerase III subunit alpha [Methylobacterium chloromethanicum
            CM4]
 gi|218521480|gb|ACK82065.1| DNA polymerase III, alpha subunit [Methylobacterium chloromethanicum
            CM4]
          Length = 1173

 Score = 38.9 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   +P ++ +  +  L  +    R+   E L++ +      +R++L+D   L  + + 
Sbjct: 1064 ILEPGRPLVLTI--QANLEGEDVRARITTAEPLDQAAARHQKGMRIFLRDDRALSSVQQR 1121

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               R       +G++ LI +   G+ E+E+ L D Y  +P++A  L  + G+ +V
Sbjct: 1122 LTLR------GEGEVSLILILDGGEREVEVRLKDRYQATPQVAGALRAVPGVVQV 1170


>gi|299135003|ref|ZP_07028194.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2]
 gi|298589980|gb|EFI50184.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2]
          Length = 1135

 Score = 38.1 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 93   VESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIE 152
            VE L++ + +   +L+++L+D  P+  I +  E+       + G  G + +     +E E
Sbjct: 1045 VELLDQAAAKTPMALKIFLRDGKPVESIRRRLEDHAQGAAARSGSAGEVTVVMMLDLETE 1104

Query: 153  ITLD---HYPISPEIAFDLEHITGITKV 177
            + +     + +SP+IA  L+ ITG+  V
Sbjct: 1105 VDMKLPGRFKVSPQIAGALKAITGVVDV 1132


>gi|298291824|ref|YP_003693763.1| DNA polymerase III subunit alpha [Starkeya novella DSM 506]
 gi|296928335|gb|ADH89144.1| DNA polymerase III, alpha subunit [Starkeya novella DSM 506]
          Length = 1149

 Score = 37.7 bits (86), Expect = 0.63,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 10/118 (8%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIR--LLWVESLEKKSMEMLDSLRVYLQDRSPLREIH 121
            LL   K  ++ VS E    +Q + +R  +   E L++ + +M   +R++L+   PL  + 
Sbjct: 1035 LLEPGKALLLQVSAE----MQGEDVRARIQTAEPLDEAASKMQKGMRIFLRSPDPLDSVA 1090

Query: 122  KYFENRQTQNYDKQGKIGLIFLRSQ-GKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                +      D  G++ L+ L  + G  E+E+ L   Y +SP+IA  L+ + G+ +V
Sbjct: 1091 SRLGSLAGGRGD--GEVALVLLLGESGATEVELKLPGRYSLSPQIAGALKAVPGVVQV 1146


>gi|319898845|ref|YP_004158938.1| DNA polymerase III alpha subunit [Bartonella clarridgeiae 73]
 gi|319402809|emb|CBI76360.1| DNA polymerase III alpha subunit [Bartonella clarridgeiae 73]
          Length = 1162

 Score = 37.4 bits (85), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +II V  ED+   +  S+R+  +ESLE++++     +R++++    L +I   
Sbjct: 1053 MLESGKSFIITVIAEDRS--EGISLRIETIESLEEQALRHHKMMRLFIKTTDMLPQI--- 1107

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               +Q  +    G++ LI ++  G  E+EI L   Y +   +   ++ + GI  V
Sbjct: 1108 ---KQNLDSKGNGEVALILIQEDGLREVEIALPKKYKVDSRVVNAMKALPGIVDV 1159


>gi|319783852|ref|YP_004143328.1| DNA polymerase III subunit alpha [Mesorhizobium ciceri biovar
            biserrulae WSM1271]
 gi|317169740|gb|ADV13278.1| DNA polymerase III, alpha subunit [Mesorhizobium ciceri biovar
            biserrulae WSM1271]
          Length = 1175

 Score = 37.4 bits (85), Expect = 1.00,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 65/115 (56%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   +  +I V+ ED+   +  ++R+  V+SLE ++  +  +LR+++++ +P+  +   
Sbjct: 1066 LLEAGRSVVITVAAEDRP--EGVNLRINSVQSLEDEASRIQKALRIFVRNATPINTLAGQ 1123

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               R       +G++  + ++ +G+ EIEI L + Y ISP+IA  +  + G+ +V
Sbjct: 1124 LTVR------GEGQVSFVLIKEEGEGEIEIELPNRYRISPQIASAMRAVPGVVEV 1172


>gi|192291642|ref|YP_001992247.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris TIE-1]
 gi|192285391|gb|ACF01772.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris TIE-1]
          Length = 1151

 Score = 36.6 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 89   RLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIF-LRSQG 147
            R+L  E L+  + +    LR++L+D   L  + K  +  +T+     G I L+  L  Q 
Sbjct: 1062 RVLHAEPLDAAAAKTQKGLRIFLRDTKFLDSVVKRLQPPETKV--AGGNIALVLRLDPQT 1119

Query: 148  KIEIEITLDHYPISPEIAFDLEHITGITKV 177
            ++E +I    Y +SP+IA  ++ +TG+  V
Sbjct: 1120 EVEFDIP-GRYHVSPQIAGAIKAVTGVEHV 1148


>gi|39935989|ref|NP_948265.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris CGA009]
 gi|39649843|emb|CAE28365.1| DNA polymerase III alpha subunit [Rhodopseudomonas palustris CGA009]
          Length = 1151

 Score = 36.6 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 89   RLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIF-LRSQG 147
            R+L  E L+  + +    LR++L+D   L  + K  +  +T+     G I L+  L  Q 
Sbjct: 1062 RVLHAEPLDAAAAKTQKGLRIFLRDTKFLDSVVKRLQPPETKV--AGGNIALVLRLDPQT 1119

Query: 148  KIEIEITLDHYPISPEIAFDLEHITGITKV 177
            ++E +I    Y +SP+IA  ++ +TG+  V
Sbjct: 1120 EVEFDIP-GRYHVSPQIAGAIKAVTGVEHV 1148


>gi|182678571|ref|YP_001832717.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica
            ATCC 9039]
 gi|182634454|gb|ACB95228.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica
            ATCC 9039]
          Length = 1159

 Score = 35.8 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 89   RLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGK 148
            R+L VE L++ +  +   LRV++++   L  + +    R        G+I LI + + G+
Sbjct: 1075 RILSVEPLDQAASRIQKGLRVFVRNEDSLASVAQKLTTR------GDGEISLILMTNGGE 1128

Query: 149  IEIEITLDHYPISPEIAFDLEHITGITKV 177
            +E+ +    + +S ++A  L+ I GI  V
Sbjct: 1129 VEVRLP-GTFNVSAQLAGSLKTIPGIVAV 1156


>gi|262401560|ref|ZP_06078127.1| GTP-binding protein HflX [Vibrio sp. RC586]
 gi|262352275|gb|EEZ01404.1| GTP-binding protein HflX [Vibrio sp. RC586]
          Length = 429

 Score = 35.4 bits (80), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 11/118 (9%)

Query: 34  AIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSIR 89
           A+E  LQE  A E P  L + +   LEE+ PR+ R  E  P I+ +S     ++Q   I 
Sbjct: 297 AVETVLQEIDAHEVPTLLVMNKIDNLEEQTPRIERDDEGVPKIVWIS-----AMQGTGIE 351

Query: 90  LLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146
           LL+    E+ + ++++ +LR+  + +  +R         Q + YD +G + LI +R Q
Sbjct: 352 LLFEALSERLASQVVEHNLRIPPRHQGRIRSTFFQMNCIQQEEYDPEGNL-LITVRMQ 408


>gi|124009979|ref|ZP_01694643.1| histidine kinase family [Microscilla marina ATCC 23134]
 gi|123984001|gb|EAY24384.1| histidine kinase family [Microscilla marina ATCC 23134]
          Length = 580

 Score = 35.4 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 65  LREKKPYIIVVSQEDKLSLQRDSIRL----LWVESLEKKSMEMLDSLRVYLQDRSPLREI 120
           L E+   +I VS +  + LQR+ + L    L V SL K+    L ++ V   D  P   I
Sbjct: 423 LAEELEILIDVSSKKLIPLQRE-VELCESYLEVMSLRKEVNYTLYTVGVKPDDLIPPALI 481

Query: 121 HKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL 155
           H   EN  T N+DK GK+      +Q + +   TL
Sbjct: 482 HTAIENGITHNHDKDGKMAFYLSFAQNRYQRHYTL 516


>gi|163802746|ref|ZP_02196636.1| GTP-binding protein HflX [Vibrio sp. AND4]
 gi|159173453|gb|EDP58275.1| GTP-binding protein HflX [Vibrio sp. AND4]
          Length = 429

 Score = 34.7 bits (78), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 9/109 (8%)

Query: 41  EAEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK 98
           +A+E P  + + +   LEE+KPR+ R  E  P  + VS  D L      I LL+    E+
Sbjct: 306 DADEVPTLVVMNKIDNLEEQKPRIERDEEGVPRAVWVSAMDGL-----GIELLFDALTER 360

Query: 99  KSMEMLD-SLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146
            + +M++  LR+  Q +  LR      +  Q + YD++G + LI +R Q
Sbjct: 361 LASQMVEYQLRIPPQYQGRLRSTFFDMKCIQREEYDQEGDL-LIDIRMQ 408


>gi|258623500|ref|ZP_05718502.1| GTP-binding protein HflX [Vibrio mimicus VM573]
 gi|262163593|ref|ZP_06031336.1| GTP-binding protein HflX [Vibrio mimicus VM223]
 gi|262172554|ref|ZP_06040232.1| GTP-binding protein HflX [Vibrio mimicus MB-451]
 gi|258584212|gb|EEW08959.1| GTP-binding protein HflX [Vibrio mimicus VM573]
 gi|261893630|gb|EEY39616.1| GTP-binding protein HflX [Vibrio mimicus MB-451]
 gi|262027960|gb|EEY46622.1| GTP-binding protein HflX [Vibrio mimicus VM223]
          Length = 429

 Score = 34.7 bits (78), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 11/118 (9%)

Query: 34  AIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSIR 89
           A+E  LQE  A E P  L + +   LEE+ PR+ R  E  P ++ +S     ++Q   I 
Sbjct: 297 AVETVLQEIDAHEVPTLLVMNKIDSLEEQAPRIERDDEGIPRVVWIS-----AMQGSGIE 351

Query: 90  LLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146
           LL+    E+ + ++++  LR+  + +  +R      +  Q + YD +G + LI +R Q
Sbjct: 352 LLFQALSERLASQVVEHHLRIPPRHQGRIRSTFFQMKCIQQEEYDPEGNL-LITVRMQ 408


>gi|311252631|ref|XP_003125192.1| PREDICTED: LOW QUALITY PROTEIN: spectrin beta chain, brain 1-like
            [Sus scrofa]
          Length = 2364

 Score = 34.7 bits (78), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 16/123 (13%)

Query: 13   KGKKKPDGNHDFLFLEDCYD-----HAIEMKLQEAEEDPNFLS----LQEQQQLE---EE 60
            K ++  D N   LF + C D     H +E ++Q  +   +  S    L++QQ LE   E 
Sbjct: 1372 KAQRLFDANKAELFTQSCADLDKWLHGLESQIQSDDYGKDLTSVNILLKKQQMLENQMEV 1431

Query: 61   KPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREI 120
            + + + E +     +SQE K + + DS RL    +++ K ME+L+ L    Q+    +EI
Sbjct: 1432 RKKEIEELQSQAQALSQEGKSTDEVDSKRL----TVQTKFMELLEPLNERKQNLLASKEI 1487

Query: 121  HKY 123
            H++
Sbjct: 1488 HQF 1490


>gi|126331403|ref|XP_001373688.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 1645

 Score = 34.7 bits (78), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 57  LEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDS------LRVY 110
           L  E    L+E  PY ++VS E   S Q D + +  + +L+KK   +L S      LR++
Sbjct: 202 LSPEWEIFLKESYPYFLIVSDEGITSRQTDYLNIFILHALQKKINVVLASGQETNMLRIF 261

Query: 111 LQDRSPLREIHKYFENRQTQ 130
                PL    K+FE  + +
Sbjct: 262 GYQVQPLYSHWKFFEQHKNE 281


>gi|300795972|ref|NP_001179205.1| spectrin beta chain, brain 1 [Bos taurus]
 gi|297480310|ref|XP_002691372.1| PREDICTED: spectrin, beta, non-erythrocytic 1 [Bos taurus]
 gi|296482673|gb|DAA24788.1| spectrin, beta, non-erythrocytic 1 [Bos taurus]
          Length = 2363

 Score = 34.7 bits (78), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 16/123 (13%)

Query: 13   KGKKKPDGNHDFLFLEDCYD-----HAIEMKLQEAEEDPNFLS----LQEQQQLE---EE 60
            K ++  D N   LF + C D     H +E ++Q  +   +  S    L++QQ LE   E 
Sbjct: 1372 KAQRLFDANKAELFTQSCADLDKWLHGLESQIQSDDYGKDLTSVNILLKKQQMLENQMEV 1431

Query: 61   KPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREI 120
            + + + E +     +SQE K + + DS RL    +++ K ME+L+ L    Q+    +EI
Sbjct: 1432 RKKEIEELQSQAQALSQEGKSTDEVDSKRL----TVQTKFMELLEPLNERKQNLLASKEI 1487

Query: 121  HKY 123
            H++
Sbjct: 1488 HQF 1490


>gi|304391642|ref|ZP_07373584.1| DNA polymerase III subunit alpha [Ahrensia sp. R2A130]
 gi|303295871|gb|EFL90229.1| DNA polymerase III subunit alpha [Ahrensia sp. R2A130]
          Length = 1166

 Score = 34.7 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 13/119 (10%)

Query: 59   EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLR 118
            E    LL+  +  I+ V  ED+   +  S+R++ +  +E ++      L ++L+D SPL 
Sbjct: 1052 EAASELLQAGRSLILNVVGEDRP--EGVSLRVMMIRGIEDEAARTQYLLNIFLRDASPLP 1109

Query: 119  EIHKYFENRQTQNYDKQGK--IGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGI 174
             I             KQG+  + L+ +   G  E+E+ L     +SP+IA  L+ I G+
Sbjct: 1110 SI--------ASQLGKQGEGIVKLVVIDFDGGREVEVELPGKRLVSPQIANALKAIDGV 1160


>gi|75676051|ref|YP_318472.1| DNA polymerase III subunit alpha [Nitrobacter winogradskyi Nb-255]
 gi|74420921|gb|ABA05120.1| DNA polymerase III, alpha subunit [Nitrobacter winogradskyi Nb-255]
          Length = 1168

 Score = 34.7 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 15/102 (14%)

Query: 89   RLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQG- 147
            R+   E L+  + +    LR++L+D  PL  I K  +     N D  G   +   R  G 
Sbjct: 1066 RVSRAEPLDDAAAKTQKGLRIFLRDSRPLESIEKRLQ--ANDNGDPAGAAKVPASRQAGE 1123

Query: 148  -----------KIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                       + E+EI L   + +SP+IA  ++ +TG+  V
Sbjct: 1124 GEVSLVMMLDLETEVEIKLPGRFRVSPQIAGAIKAVTGVVDV 1165


>gi|258625634|ref|ZP_05720515.1| GTP-binding protein HflX [Vibrio mimicus VM603]
 gi|258582089|gb|EEW06957.1| GTP-binding protein HflX [Vibrio mimicus VM603]
          Length = 429

 Score = 34.3 bits (77), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 11/118 (9%)

Query: 34  AIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSIR 89
           A+E  LQE  A E P  L + +   LEE+ PR+ R  E  P ++ +S     ++Q   I 
Sbjct: 297 AVETVLQEIDAHEVPTLLVMNKIDSLEEQAPRIERDDEGIPRVVWIS-----AMQGSGIE 351

Query: 90  LLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146
           LL+    E+ + ++++  LR+  + +  +R      +  Q + YD +G + LI +R Q
Sbjct: 352 LLFQTLSERLASQVVEHHLRIPPRHQGRIRSTFFQMKCIQQEEYDPEGNL-LITVRMQ 408


>gi|229519943|ref|ZP_04409374.1| GTP-binding protein HflX [Vibrio cholerae TM 11079-80]
 gi|229343071|gb|EEO08058.1| GTP-binding protein HflX [Vibrio cholerae TM 11079-80]
          Length = 429

 Score = 34.3 bits (77), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 11/118 (9%)

Query: 34  AIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSIR 89
           A+E  LQE  A E P  L + +   LEE+ PR+ R  E  P ++ +S     ++Q   I 
Sbjct: 297 AVETVLQEIDAHEVPTLLVMNKIDNLEEQSPRIERDDEGVPRVVWIS-----AMQGAGIE 351

Query: 90  LLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146
           LL+    E+ + ++++  LR+  + +  +R         Q + YD +G + LI +R Q
Sbjct: 352 LLFEALSERLASQVVEHHLRIPPRHQGRIRSTFFQMNCIQQEEYDPEGNL-LITVRMQ 408


>gi|254292140|ref|ZP_04962912.1| GTP-binding protein HflX [Vibrio cholerae AM-19226]
 gi|150421939|gb|EDN13914.1| GTP-binding protein HflX [Vibrio cholerae AM-19226]
          Length = 429

 Score = 34.3 bits (77), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 11/118 (9%)

Query: 34  AIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSIR 89
           A+E  LQE  A E P  L + +   LEE+ PR+ R  E  P ++ +S     ++Q   I 
Sbjct: 297 AVETVLQEIDAHEVPTLLVMNKIDNLEEQSPRIERDDEGVPRVVWIS-----AMQGAGIE 351

Query: 90  LLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146
           LL+    E+ + ++++  LR+  + +  +R         Q + YD +G + LI +R Q
Sbjct: 352 LLFEALSERLASQVVEHHLRIPPRHQGRIRSTFFQMNCIQQEEYDPEGNL-LITVRMQ 408


>gi|153217190|ref|ZP_01950954.1| GTP-binding protein HflX [Vibrio cholerae 1587]
 gi|153803483|ref|ZP_01958069.1| GTP-binding protein HflX [Vibrio cholerae MZO-3]
 gi|153827316|ref|ZP_01979983.1| GTP-binding protein HflX [Vibrio cholerae MZO-2]
 gi|153830894|ref|ZP_01983561.1| GTP-binding protein HflX [Vibrio cholerae 623-39]
 gi|229512374|ref|ZP_04401849.1| GTP-binding protein HflX [Vibrio cholerae TMA 21]
 gi|229526912|ref|ZP_04416315.1| GTP-binding protein HflX [Vibrio cholerae bv. albensis VL426]
 gi|297582276|ref|ZP_06944190.1| GTP-binding protein HflX [Vibrio cholerae RC385]
 gi|124113773|gb|EAY32593.1| GTP-binding protein HflX [Vibrio cholerae 1587]
 gi|124120984|gb|EAY39727.1| GTP-binding protein HflX [Vibrio cholerae MZO-3]
 gi|148873628|gb|EDL71763.1| GTP-binding protein HflX [Vibrio cholerae 623-39]
 gi|149738782|gb|EDM53124.1| GTP-binding protein HflX [Vibrio cholerae MZO-2]
 gi|229336081|gb|EEO01100.1| GTP-binding protein HflX [Vibrio cholerae bv. albensis VL426]
 gi|229350589|gb|EEO15534.1| GTP-binding protein HflX [Vibrio cholerae TMA 21]
 gi|297533495|gb|EFH72342.1| GTP-binding protein HflX [Vibrio cholerae RC385]
 gi|327483210|gb|AEA77617.1| GTP-binding protein HflX [Vibrio cholerae LMA3894-4]
          Length = 429

 Score = 34.3 bits (77), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 11/118 (9%)

Query: 34  AIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSIR 89
           A+E  LQE  A E P  L + +   LEE+ PR+ R  E  P ++ +S     ++Q   I 
Sbjct: 297 AVETVLQEIDAHEVPTLLVMNKIDNLEEQSPRIERDDEGVPRVVWIS-----AMQGAGIE 351

Query: 90  LLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146
           LL+    E+ + ++++  LR+  + +  +R         Q + YD +G + LI +R Q
Sbjct: 352 LLFEALSERLASQVVEHHLRIPPRHQGRIRSTFFQMNCIQQEEYDPEGNL-LITVRMQ 408


Searching..................................................done


Results from round 2




>gi|315122785|ref|YP_004063274.1| DNA polymerase III subunit alpha [Candidatus Liberibacter
            solanacearum CLso-ZC1]
 gi|313496187|gb|ADR52786.1| DNA polymerase III subunit alpha [Candidatus Liberibacter
            solanacearum CLso-ZC1]
          Length = 1226

 Score =  270 bits (690), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 124/181 (68%), Positives = 150/181 (82%)

Query: 4    IFFPKNNNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPR 63
            IFFP  N+   KK  + N DFL LEDCYDH+IE KLQEAEEDPNFLS+QEQ++LE++KP 
Sbjct: 1045 IFFPNYNSSNRKKTSNKNRDFLTLEDCYDHSIERKLQEAEEDPNFLSVQEQRKLEKKKPY 1104

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LLREK PYII VSQED +S++RDS+RLL V+SL+ KSMEML SL++YLQD SPL EIHKY
Sbjct: 1105 LLREKNPYIIFVSQEDMVSVKRDSVRLLLVQSLKNKSMEMLVSLKIYLQDHSPLTEIHKY 1164

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKVVQVIHN 183
            F+NRQ Q++DK GKI L+F+R Q +IE+EITLD YPIS EI+FDLEHI GI KVV +I +
Sbjct: 1165 FQNRQVQHHDKHGKIDLVFVRLQEEIELEITLDQYPISLEISFDLEHIAGIMKVVPIIRD 1224

Query: 184  E 184
            E
Sbjct: 1225 E 1225


>gi|15965042|ref|NP_385395.1| DNA polymerase III subunit alpha [Sinorhizobium meliloti 1021]
 gi|307301114|ref|ZP_07580883.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C]
 gi|15074221|emb|CAC45868.1| Probable DNA polymerase III, alpha chain [Sinorhizobium meliloti
            1021]
 gi|306904069|gb|EFN34655.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C]
          Length = 1169

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  ++ V  E++   +   +R+  + SLE++S++M  +LRVY++D  PLR I  +
Sbjct: 1060 LLEPGKSLVMTVDAEERP--EGIGLRIRTLRSLEEESLQMQKALRVYVRDCGPLRSIASH 1117

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                   N    G +  I ++  G+ EIE+ L + Y ISPEIA  L    G+  V
Sbjct: 1118 L------NAKGDGLVSFIVIKDNGQREIEVELNEKYRISPEIAAALRSAPGVVDV 1166


>gi|307317847|ref|ZP_07597285.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83]
 gi|306896609|gb|EFN27357.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83]
          Length = 1169

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  ++ V  E++   +   +R+  + SLE++S++M  +LRVY++D  PLR I  +
Sbjct: 1060 LLEPGKSLVMTVDAEERP--EGIGLRIRTLRSLEEESLQMQKALRVYVRDCGPLRSIASH 1117

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                   N    G +  I ++  G+ EIE+ L + Y ISPEIA  L    G+  V
Sbjct: 1118 L------NAKGDGLVSFIVIKDNGQREIEVELNEKYRISPEIAAALRSAPGVVDV 1166


>gi|241204110|ref|YP_002975206.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv.
            trifolii WSM1325]
 gi|240858000|gb|ACS55667.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
            trifolii WSM1325]
          Length = 1165

 Score =  155 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +++  + E++   +   +R+  ++SLE+KS++M  +LRVY++D  PLR +  +
Sbjct: 1056 VLESGKSFVLTATGEERP--EGIGLRIQTIQSLEEKSLQMQKALRVYVRDSGPLRMVAGH 1113

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                   N    G +  I ++  GK E+E+ L + Y I+PEIA  L    G+  V
Sbjct: 1114 L------NAKGDGLVSFIVIKEDGKREVEVALSEKYRITPEIAAALRAAPGVVDV 1162


>gi|116251489|ref|YP_767327.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv. viciae
            3841]
 gi|115256137|emb|CAK07218.1| putative DNA polymerase III alpha subunit [Rhizobium leguminosarum
            bv. viciae 3841]
          Length = 1165

 Score =  155 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +++  + E++   +   +R+  ++SLE+KS++M  +LRVY++D  PLR +  +
Sbjct: 1056 VLESGKSFVLTATGEERP--EGIGLRIQTIQSLEEKSLQMQKALRVYVRDSGPLRMVAGH 1113

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                   N    G +  I ++  GK E+E+ L + Y I+PEIA  L    G+  V
Sbjct: 1114 L------NAKGDGLVSFIVIKEDGKREVEVALSEKYRITPEIAAALRAAPGVVDV 1162


>gi|209548886|ref|YP_002280803.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv.
            trifolii WSM2304]
 gi|209534642|gb|ACI54577.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
            trifolii WSM2304]
          Length = 1165

 Score =  154 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +++  + E++   +   +R+  ++SLE+KS++M  +LRVY++D  PL+ +  +
Sbjct: 1056 VLESGKSFVLTATGEERP--EGIGLRVQTIQSLEEKSLQMQKALRVYVRDSGPLKMVAGH 1113

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               R        G +  I ++ +GK E+E+ L + Y I+PEIA  L    G+  V
Sbjct: 1114 LNAR------GDGLVSFIVIKEEGKREVEVALAEKYRITPEIAAALRAAPGVVDV 1162


>gi|327194832|gb|EGE61666.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CNPAF512]
          Length = 1165

 Score =  154 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +++  + E++   +   +R+  ++SLE+KS++M  +LRVY++D  PL+ +  +
Sbjct: 1056 MLESGKSFLLTATGEERP--EGIGLRIQTIQSLEEKSLQMQKALRVYVRDSGPLKMVAGH 1113

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                   N    G +  I ++ +GK E+E+ L + Y I+PEIA  L    G+  V
Sbjct: 1114 L------NAKGDGLVSFIVIKEEGKREVEVALPEKYRITPEIAAALRAAPGVVDV 1162


>gi|190891309|ref|YP_001977851.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652]
 gi|190696588|gb|ACE90673.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652]
          Length = 1165

 Score =  154 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +++  + E++   +   +R+  ++SLE+KS++M  +LRVY++D  PL+ +  +
Sbjct: 1056 MLESGKSFLLTATGEERP--EGIGLRIQTIQSLEEKSLQMQKALRVYIRDSGPLKMVAGH 1113

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                   N    G +  I ++ +GK E+E+ L + Y I+PEIA  L    G+  V
Sbjct: 1114 L------NAKGDGLVSFIVIKEEGKREVEVALPEKYRITPEIAAALRAAPGVVDV 1162


>gi|150396144|ref|YP_001326611.1| DNA polymerase III subunit alpha [Sinorhizobium medicae WSM419]
 gi|150027659|gb|ABR59776.1| DNA polymerase III, alpha subunit [Sinorhizobium medicae WSM419]
          Length = 1165

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  ++ V  E++   +   +R+  + SLE++S++M  +LRVY++D  PLR I  +
Sbjct: 1056 LLEAGKSLVMTVDAEERP--EGIGLRIRTLRSLEEESLQMQKALRVYVRDCGPLRSIASH 1113

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               R        G +  I ++  G+ EIE+ L + Y ISPEIA  L    G+  V
Sbjct: 1114 LNAR------GDGLVSFIVIKDNGQREIEVELSEKYRISPEIAAALRSAPGVVDV 1162


>gi|227821642|ref|YP_002825612.1| DNA polymerase III subunit alpha [Sinorhizobium fredii NGR234]
 gi|227340641|gb|ACP24859.1| DNA polymerase III, alpha subunit [Sinorhizobium fredii NGR234]
          Length = 1165

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  ++ V  E++   +   +R+  + SLE++S++M  +LRVY++D  PLR I  +
Sbjct: 1056 LLEAGKSLVMTVDAEERP--EGIGLRIRTLRSLEEESLQMQKALRVYVRDSGPLRSIASH 1113

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                   N    G +  I ++  G+ EIE+ L + Y ISPEIA  L    G+  V
Sbjct: 1114 L------NAKGDGLVSFIVIKDNGQREIEVELSEKYRISPEIAAALRSAPGVVDV 1162


>gi|325292654|ref|YP_004278518.1| DNA polymerase III subunit alpha [Agrobacterium sp. H13-3]
 gi|325060507|gb|ADY64198.1| DNA polymerase III alpha subunit [Agrobacterium sp. H13-3]
          Length = 1166

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+   +SLE+KS++M  +LRVY++D  PL+ + ++
Sbjct: 1057 LLEVGKSLVITVQAEERP--EGIGLRIQTAQSLEEKSVQMQKALRVYVRDSGPLKTVARH 1114

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                   N    G +  I ++ +G  EIE+ L + Y ISPEIA  L    G+  V
Sbjct: 1115 L------NTKGDGSVYFIVIKDEGSREIEVELTEKYRISPEIAAALRSAPGVVDV 1163


>gi|222148298|ref|YP_002549255.1| DNA polymerase III subunit alpha [Agrobacterium vitis S4]
 gi|221735286|gb|ACM36249.1| DNA polymerase III alpha chain [Agrobacterium vitis S4]
          Length = 1179

 Score =  152 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V+ E++   +   +R+   +SLE+KS++M  +LRVYL+D SPLR +  +
Sbjct: 1070 LLESGKSLVITVAAEERP--EGIGLRIQTAQSLEEKSLQMQKTLRVYLRDSSPLRALAAH 1127

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
                   N    G +  + ++  G+ EIE+ L+  + I+PEIA  +    G+  V
Sbjct: 1128 L------NTKGDGLVSFVVIKEDGRREIEVELNQRFRITPEIAAAMRSAPGVVDV 1176


>gi|15888619|ref|NP_354300.1| DNA polymerase III subunit alpha [Agrobacterium tumefaciens str. C58]
 gi|15156343|gb|AAK87085.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58]
          Length = 1167

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+   +SLE+KS++M  +LRVY++D  PL+ + ++
Sbjct: 1058 LLEVGKSLVINVQAEERP--EGIGLRIQTAQSLEEKSVQMQKALRVYVRDSGPLKTVARH 1115

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                   N    G +  I ++ +G  EIE+ L + Y ISPEIA  L    G+  V
Sbjct: 1116 L------NTKGDGSVYFIVIKDEGSREIEVELTEKYRISPEIAAALRSAPGVVDV 1164


>gi|153009730|ref|YP_001370945.1| DNA polymerase III subunit alpha [Ochrobactrum anthropi ATCC 49188]
 gi|151561618|gb|ABS15116.1| DNA polymerase III, alpha subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 1163

 Score =  148 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  +LR+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKALRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L   Y +SP+IA  ++ I G+  V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVDV 1160


>gi|222085600|ref|YP_002544130.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter
            K84]
 gi|221723048|gb|ACM26204.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter
            K84]
          Length = 1187

 Score =  148 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +++    +++   +  S+RL   +SLE+KS++M  +LRVY++D  PL+ +  +
Sbjct: 1078 VLEVGKSFVVTAQADERP--EGISLRLQTAQSLEEKSLQMQKALRVYVRDSGPLKAVAAH 1135

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                   N    G +  I ++ +GK E+E+ L + Y I+PEIA  L    G+  V
Sbjct: 1136 L------NAKGDGLVSFIVIKEEGKREVEVVLAEKYRITPEIAAALRTAPGVIDV 1184


>gi|306841939|ref|ZP_07474617.1| DNA polymerase III, alpha subunit [Brucella sp. BO2]
 gi|306287972|gb|EFM59380.1| DNA polymerase III, alpha subunit [Brucella sp. BO2]
          Length = 1163

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L   Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|148559880|ref|YP_001258802.1| DNA polymerase III subunit alpha [Brucella ovis ATCC 25840]
 gi|148371137|gb|ABQ61116.1| DNA polymerase III, alpha subunit [Brucella ovis ATCC 25840]
          Length = 1163

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L   Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|17987420|ref|NP_540054.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M]
 gi|17983111|gb|AAL52318.1| DNA polymerase iii, alpha chain [Brucella melitensis bv. 1 str. 16M]
          Length = 1178

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1069 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1126

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L   Y +SP+IA  ++ I G+ +V
Sbjct: 1127 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1175


>gi|256369256|ref|YP_003106764.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915]
 gi|255999416|gb|ACU47815.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915]
          Length = 1163

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L   Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|306843761|ref|ZP_07476360.1| DNA polymerase III, alpha subunit [Brucella sp. BO1]
 gi|306275952|gb|EFM57665.1| DNA polymerase III, alpha subunit [Brucella sp. BO1]
          Length = 1163

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L   Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|254718932|ref|ZP_05180743.1| DNA polymerase III subunit alpha [Brucella sp. 83/13]
 gi|265983919|ref|ZP_06096654.1| DNA polymerase III subunit alpha [Brucella sp. 83/13]
 gi|306838837|ref|ZP_07471668.1| DNA polymerase III, alpha subunit [Brucella sp. NF 2653]
 gi|264662511|gb|EEZ32772.1| DNA polymerase III subunit alpha [Brucella sp. 83/13]
 gi|306406121|gb|EFM62369.1| DNA polymerase III, alpha subunit [Brucella sp. NF 2653]
          Length = 1163

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L   Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|254689079|ref|ZP_05152333.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870]
 gi|256257328|ref|ZP_05462864.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68]
 gi|260754577|ref|ZP_05866925.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870]
 gi|260883604|ref|ZP_05895218.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68]
 gi|297248177|ref|ZP_06931895.1| DNA polymerase III subunit alpha [Brucella abortus bv. 5 str. B3196]
 gi|260674685|gb|EEX61506.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870]
 gi|260873132|gb|EEX80201.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68]
 gi|297175346|gb|EFH34693.1| DNA polymerase III subunit alpha [Brucella abortus bv. 5 str. B3196]
          Length = 1163

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L   Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|225852339|ref|YP_002732572.1| DNA polymerase III subunit alpha [Brucella melitensis ATCC 23457]
 gi|256264162|ref|ZP_05466694.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 2 str.
            63/9]
 gi|225640704|gb|ACO00618.1| DNA polymerase III, alpha subunit [Brucella melitensis ATCC 23457]
 gi|263094380|gb|EEZ18225.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 2 str.
            63/9]
          Length = 1163

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L   Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|254693562|ref|ZP_05155390.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya]
 gi|261213827|ref|ZP_05928108.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya]
 gi|260915434|gb|EEX82295.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya]
          Length = 1163

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L   Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|161618789|ref|YP_001592676.1| DNA polymerase III subunit alpha [Brucella canis ATCC 23365]
 gi|254704138|ref|ZP_05165966.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686]
 gi|256044502|ref|ZP_05447406.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str.
            Rev.1]
 gi|256060935|ref|ZP_05451093.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33]
 gi|256113358|ref|ZP_05454216.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str.
            Ether]
 gi|260563856|ref|ZP_05834342.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M]
 gi|260566613|ref|ZP_05837083.1| DNA polymerase III subunit alpha [Brucella suis bv. 4 str. 40]
 gi|261324935|ref|ZP_05964132.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33]
 gi|261754804|ref|ZP_05998513.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686]
 gi|265990926|ref|ZP_06103483.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str.
            Rev.1]
 gi|265994764|ref|ZP_06107321.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str.
            Ether]
 gi|161335600|gb|ABX61905.1| DNA polymerase III, alpha subunit [Brucella canis ATCC 23365]
 gi|260153872|gb|EEW88964.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M]
 gi|260156131|gb|EEW91211.1| DNA polymerase III subunit alpha [Brucella suis bv. 4 str. 40]
 gi|261300915|gb|EEY04412.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33]
 gi|261744557|gb|EEY32483.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686]
 gi|262765877|gb|EEZ11666.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str.
            Ether]
 gi|263001710|gb|EEZ14285.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str.
            Rev.1]
 gi|326408847|gb|ADZ65912.1| DNA polymerase III subunit alpha [Brucella melitensis M28]
 gi|326538562|gb|ADZ86777.1| DNA polymerase III, alpha subunit [Brucella melitensis M5-90]
          Length = 1163

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L   Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|23501712|ref|NP_697839.1| DNA polymerase III subunit alpha [Brucella suis 1330]
 gi|23347636|gb|AAN29754.1| DNA polymerase III, alpha subunit [Brucella suis 1330]
          Length = 1163

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L   Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|163843098|ref|YP_001627502.1| DNA polymerase III subunit alpha [Brucella suis ATCC 23445]
 gi|163673821|gb|ABY37932.1| DNA polymerase III, alpha subunit [Brucella suis ATCC 23445]
          Length = 1163

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L   Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|294852181|ref|ZP_06792854.1| DNA polymerase III subunit alpha [Brucella sp. NVSL 07-0026]
 gi|294820770|gb|EFG37769.1| DNA polymerase III subunit alpha [Brucella sp. NVSL 07-0026]
          Length = 1188

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1079 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1136

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L   Y +SP+IA  ++ I G+ +V
Sbjct: 1137 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1185


>gi|62289774|ref|YP_221567.1| DNA polymerase III subunit alpha [Brucella abortus bv. 1 str. 9-941]
 gi|82699702|ref|YP_414276.1| DNA polymerase III subunit alpha [Brucella melitensis biovar Abortus
            2308]
 gi|189024017|ref|YP_001934785.1| DNA polymerase III subunit alpha [Brucella abortus S19]
 gi|254697213|ref|ZP_05159041.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str.
            86/8/59]
 gi|254730110|ref|ZP_05188688.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292]
 gi|260545478|ref|ZP_05821219.1| DNA polymerase III subunit alpha subunit [Brucella abortus NCTC 8038]
 gi|260757800|ref|ZP_05870148.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292]
 gi|260761623|ref|ZP_05873966.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str.
            86/8/59]
 gi|62195906|gb|AAX74206.1| DnaE-2, DNA polymerase III, alpha subunit [Brucella abortus bv. 1
            str. 9-941]
 gi|82615803|emb|CAJ10801.1| Phosphoesterase PHP, N-terminal:PHP domain C-terminal region:OB-fold
            nucleic acid binding domain:DNA polymerase III alpha sub
            [Brucella melitensis biovar Abortus 2308]
 gi|189019589|gb|ACD72311.1| DNA polymerase III subunit alpha [Brucella abortus S19]
 gi|260096885|gb|EEW80760.1| DNA polymerase III subunit alpha subunit [Brucella abortus NCTC 8038]
 gi|260668118|gb|EEX55058.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292]
 gi|260672055|gb|EEX58876.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str.
            86/8/59]
          Length = 1163

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L   Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|237815260|ref|ZP_04594258.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A]
 gi|237790097|gb|EEP64307.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A]
          Length = 1190

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1081 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1138

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L   Y +SP+IA  ++ I G+ +V
Sbjct: 1139 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1187


>gi|110633608|ref|YP_673816.1| DNA polymerase III subunit alpha [Mesorhizobium sp. BNC1]
 gi|110284592|gb|ABG62651.1| DNA polymerase III, alpha subunit [Chelativorans sp. BNC1]
          Length = 1172

 Score =  145 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 65/115 (56%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   +  +I+VS ED+   +  ++R+  V+SLE ++  M  +LR+YL+D  P+  I   
Sbjct: 1063 LLEPGRSVVIMVSAEDRP--EGINLRIQTVQSLEAEASCMQKALRIYLRDPQPIAAISSQ 1120

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               R       +G++ LI ++  G+ EIEI L + Y ISP++A  +  ++G+  V
Sbjct: 1121 LTTR------GEGQVSLIVIKDGGRGEIEIGLPERYRISPQVAAAMRAVSGVVDV 1169


>gi|163759322|ref|ZP_02166408.1| DNA polymerase III subunit alpha [Hoeflea phototrophica DFL-43]
 gi|162283726|gb|EDQ34011.1| DNA polymerase III subunit alpha [Hoeflea phototrophica DFL-43]
          Length = 1189

 Score =  145 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+   ESLE ++     +LRV+++D  P+  +  +
Sbjct: 1080 LLEPGKSIVITVLAEERP--EGVGLRIQTAESLEDRAARGQTALRVFVRDAKPINSVSTH 1137

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
             + R       +G++  I ++  G  EIE+TL D Y ISP++A  L+   G+  V
Sbjct: 1138 LKAR------GEGQVSFIMIKDGGCREIEVTLADRYKISPQMAAALKAAPGVLDV 1186


>gi|254701591|ref|ZP_05163419.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513]
 gi|261752144|ref|ZP_05995853.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513]
 gi|261741897|gb|EEY29823.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513]
          Length = 1163

 Score =  144 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMRKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L   Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|260168558|ref|ZP_05755369.1| DNA polymerase III subunit alpha [Brucella sp. F5/99]
 gi|261758031|ref|ZP_06001740.1| DNA polymerase III subunit alpha [Brucella sp. F5/99]
 gi|261738015|gb|EEY26011.1| DNA polymerase III subunit alpha [Brucella sp. F5/99]
          Length = 1163

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L   Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQHEVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|254713932|ref|ZP_05175743.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1]
 gi|254717010|ref|ZP_05178821.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1]
 gi|261218817|ref|ZP_05933098.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1]
 gi|261321684|ref|ZP_05960881.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1]
 gi|260923906|gb|EEX90474.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1]
 gi|261294374|gb|EEX97870.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1]
          Length = 1163

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L   Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQHEVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|254706961|ref|ZP_05168789.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10]
 gi|254709931|ref|ZP_05171742.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94]
 gi|256031424|ref|ZP_05445038.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1]
 gi|256159545|ref|ZP_05457313.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1]
 gi|256254832|ref|ZP_05460368.1| DNA polymerase III subunit alpha [Brucella ceti B1/94]
 gi|261222013|ref|ZP_05936294.1| DNA polymerase III subunit alpha [Brucella ceti B1/94]
 gi|261314424|ref|ZP_05953621.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10]
 gi|261317477|ref|ZP_05956674.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94]
 gi|265988513|ref|ZP_06101070.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1]
 gi|265997977|ref|ZP_06110534.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1]
 gi|260920597|gb|EEX87250.1| DNA polymerase III subunit alpha [Brucella ceti B1/94]
 gi|261296700|gb|EEY00197.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94]
 gi|261303450|gb|EEY06947.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10]
 gi|262552445|gb|EEZ08435.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1]
 gi|264660710|gb|EEZ30971.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1]
          Length = 1163

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1054 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1111

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L   Y +SP+IA  ++ I G+ +V
Sbjct: 1112 FNTR------GDGQVSLIVIKDNGQHEVEIELPHRYRVSPQIASAMKAIQGVVEV 1160


>gi|225627320|ref|ZP_03785357.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo]
 gi|225617325|gb|EEH14370.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo]
          Length = 1190

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  +I V  E++   +   +R+  V+SLE ++  M  ++R+YL+    +R I  +
Sbjct: 1081 LLESGKSVVITVQAENRP--EGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPH 1138

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
            F  R        G++ LI ++  G+ E+EI L   Y +SP+IA  ++ I G+ +V
Sbjct: 1139 FNTR------GDGQVSLIVIKDNGQHEVEIELPHRYRVSPQIASAMKAIQGVVEV 1187


>gi|90419565|ref|ZP_01227475.1| DNA polymerase III alpha subunit [Aurantimonas manganoxydans
            SI85-9A1]
 gi|90336502|gb|EAS50243.1| DNA polymerase III alpha subunit [Aurantimonas manganoxydans
            SI85-9A1]
          Length = 1153

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 9/114 (7%)

Query: 65   LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYF 124
            L      I+ VS E++   +  S R+  V+SLE +++ M  +LRV+++D +PL+      
Sbjct: 1045 LEPGSSVIVGVSAEERP--EGVSFRVQSVQSLEDEAVRMQKALRVFMRDANPLQAF---- 1098

Query: 125  ENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
              R     D   +I L+ +R  G+ E+EITL   Y +SP++A  ++   G+  V
Sbjct: 1099 --RSQLRADGDSEISLVLVRDGGEREVEITLPGRYRVSPQMASVVKAAPGVLDV 1150


>gi|114707392|ref|ZP_01440289.1| DNA polymerase III subunit alpha [Fulvimarina pelagi HTCC2506]
 gi|114537273|gb|EAU40400.1| DNA polymerase III subunit alpha [Fulvimarina pelagi HTCC2506]
          Length = 1151

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            ++      I+    E++   +  S R   V+SLE +++ M  +LR++L+D +P+     +
Sbjct: 1042 VMEPGASVIVTAQAEERP--EGVSFRASNVQSLEDEAVRMQKALRIFLRDENPIDAFQSH 1099

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
             +       +   ++ ++ LR  G  E+EI L D Y +SP+IA  ++   G+  V
Sbjct: 1100 LQP------NGDSEVSIVLLRDDGGREVEIMLADKYRVSPQIASAIKAAHGVVDV 1148


>gi|86357261|ref|YP_469153.1| DNA polymerase III subunit alpha [Rhizobium etli CFN 42]
 gi|86281363|gb|ABC90426.1| DNA polymerase III alpha subunit protein [Rhizobium etli CFN 42]
          Length = 1165

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +++  + E++   +   +R+  ++SLE+KS++M  +LRVY++D  PL+ +  +
Sbjct: 1056 VLESGKSFLLTATGEERP--EGIGLRIQTIQSLEEKSLQMQKALRVYIRDSGPLKMVAGH 1113

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                   N    G +  I ++ +GK E+E+ L + Y I+ EIA  L    G+  V
Sbjct: 1114 L------NAKGDGLVSFIVIKEEGKREVEVALPEKYRITAEIAAALRAAPGVVDV 1162


>gi|158423315|ref|YP_001524607.1| DNA polymerase III subunit alpha [Azorhizobium caulinodans ORS 571]
 gi|158330204|dbj|BAF87689.1| DNA polymerase III alpha subunit [Azorhizobium caulinodans ORS 571]
          Length = 1144

 Score =  132 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 8/115 (6%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL    P +++V+ E  L  +   +R+   E L++ +     +LR+++    PL  I   
Sbjct: 1034 LLEPGTPVLMMVAAE--LQGEDVRVRIQSCERLDEATARHHKNLRIFVNSTEPLTGI--- 1088

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
              +R+       G++ L+ L   GK E+EI LD  YP+SP+IA  ++ I G+  V
Sbjct: 1089 --SRRLSGGKGDGEVSLVLLMDGGKAEVEIRLDGRYPVSPQIAGAIKAIPGVVAV 1141


>gi|260463915|ref|ZP_05812111.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum
            WSM2075]
 gi|259030290|gb|EEW31570.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum
            WSM2075]
          Length = 1175

 Score =  127 bits (318), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 61/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   +  +I V+ ED+   +  ++R+  V+SLE ++  +  +LR+++++  P   I   
Sbjct: 1066 LLEAGRSVVITVAAEDRP--EGVNLRINSVQSLEDEASRIQKALRIFVRNDGPASMIQSQ 1123

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               R       + ++ +I ++ + + E+EI L   Y +SP+IA  +  + G+ +V
Sbjct: 1124 LTQR------GESQVSIIVIKDEAQGEVEIALQGGYRVSPQIASAMRAVPGVVEV 1172


>gi|328543710|ref|YP_004303819.1| DNA polymerase III subunit alpha [Polymorphum gilvum SL003B-26A1]
 gi|326413454|gb|ADZ70517.1| DNA polymerase III subunit alpha [Polymorphum gilvum SL003B-26A1]
          Length = 1146

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 9/114 (7%)

Query: 65   LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYF 124
            L   +  +I+VS +  +     S+R+  V+ +E  +  +  SLRV+L+D  PL+ + +  
Sbjct: 1038 LEPGRSVVILVSAD--MRDDEPSLRVEQVDPIEAVATRVQKSLRVFLRDERPLKSLARQL 1095

Query: 125  ENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
              R        G++ ++ L   G+ E+E+ L   Y +SPEIA  L+ + G+T V
Sbjct: 1096 GGR------GDGEVNVVVLLDGGRREVEVKLPGRYRLSPEIAGALKAVPGVTDV 1143


>gi|13471011|ref|NP_102580.1| DNA polymerase III subunit alpha [Mesorhizobium loti MAFF303099]
 gi|14021755|dbj|BAB48366.1| DNA polymerase III alpha subunit [Mesorhizobium loti MAFF303099]
          Length = 1175

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   +  +I V+ ED+   +  ++R+  V+SLE+++  +  +LR+++++  P   I   
Sbjct: 1066 LLEAGRSVVITVAAEDRP--EGVNLRINSVQSLEEEASRIQKALRIFVRNEGPASIIQSQ 1123

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               R       + ++ +I ++ + + E+EI L   Y +SP+IA  +  + G+ +V
Sbjct: 1124 LTQR------GESQVSIIVIKEEAQGEVEIALQGGYRVSPQIASAMRAVPGVVEV 1172


>gi|218659790|ref|ZP_03515720.1| DNA polymerase III subunit alpha [Rhizobium etli IE4771]
          Length = 248

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 54/97 (55%), Gaps = 9/97 (9%)

Query: 64  LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
           +L   K +++  + E++   +   +R+  ++SLE+KS++M  +LRVY++D  PL+ +  +
Sbjct: 160 MLESGKSFLLTATGEERP--EGIGLRIQTIQSLEEKSLQMQKALRVYIRDSGPLKMVAGH 217

Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYP 159
                  N    G +  I ++ +GK E+E+ L + Y 
Sbjct: 218 L------NAKGDGLVSFIVIKEEGKREVEVALPEKYR 248


>gi|319783852|ref|YP_004143328.1| DNA polymerase III subunit alpha [Mesorhizobium ciceri biovar
            biserrulae WSM1271]
 gi|317169740|gb|ADV13278.1| DNA polymerase III, alpha subunit [Mesorhizobium ciceri biovar
            biserrulae WSM1271]
          Length = 1175

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 65/115 (56%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   +  +I V+ ED+   +  ++R+  V+SLE ++  +  +LR+++++ +P+  +   
Sbjct: 1066 LLEAGRSVVITVAAEDRP--EGVNLRINSVQSLEDEASRIQKALRIFVRNATPINTLAGQ 1123

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               R       +G++  + ++ +G+ EIEI L + Y ISP+IA  +  + G+ +V
Sbjct: 1124 LTVR------GEGQVSFVLIKEEGEGEIEIELPNRYRISPQIASAMRAVPGVVEV 1172


>gi|218513825|ref|ZP_03510665.1| DNA polymerase III subunit alpha [Rhizobium etli 8C-3]
          Length = 86

 Score =  118 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 7/89 (7%)

Query: 90  LLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKI 149
           +  ++SLE+KS++M  +LRVY++D  PL+ +  +       N    G +  I ++ +GK 
Sbjct: 1   IQTIQSLEEKSLQMQKALRVYIRDSGPLKMVAGHL------NAKGDGLVSFIVIKEEGKR 54

Query: 150 EIEITL-DHYPISPEIAFDLEHITGITKV 177
           E+E+ L + Y I+PEIA  L    G+  V
Sbjct: 55  EVEVALPEKYRITPEIAAALRAAPGVVDV 83


>gi|220927035|ref|YP_002502337.1| DNA polymerase III subunit alpha [Methylobacterium nodulans ORS 2060]
 gi|219951642|gb|ACL62034.1| DNA polymerase III, alpha subunit [Methylobacterium nodulans ORS
            2060]
          Length = 1158

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   +P  + +    +   +    R+   E L++        +R+YL+D  P+  + + 
Sbjct: 1049 LLEPGRPLALQLQASAE--GEDVRARIQTCEPLDQAVARHQKGMRIYLRDERPIASVQQR 1106

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               R       +G++ LI +   G+ E+EI L D Y  +P+IA  L  + G+ +V
Sbjct: 1107 LTMR------GEGEVSLILILDGGEREVEIRLKDRYQATPQIAGALRAVPGVVQV 1155


>gi|154248204|ref|YP_001419162.1| DNA polymerase III subunit alpha [Xanthobacter autotrophicus Py2]
 gi|154162289|gb|ABS69505.1| DNA polymerase III, alpha subunit [Xanthobacter autotrophicus Py2]
          Length = 1150

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 60/115 (52%), Gaps = 4/115 (3%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL    P +++V+ E  L+ +   +R+   E L+  +      LR++L+   P+  I + 
Sbjct: 1036 LLEPGTPLLMMVAAE--LNGEDVRVRINSCEKLDPVTARHQKGLRIFLRSPEPIEGIARR 1093

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
              + +T +    G++ LI +    + E+E++L   YPISP+IA  ++ I G+  +
Sbjct: 1094 LADGKTVDA-GSGEVSLILMVEDARAEVEVSLPGKYPISPQIAGAIKAIPGVVAI 1147


>gi|254560015|ref|YP_003067110.1| DNA polymerase III subunit alpha [Methylobacterium extorquens DM4]
 gi|254267293|emb|CAX23125.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens DM4]
          Length = 1173

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   +P ++ +     L  +    R+   E L++ +      +R++L+D   L  + + 
Sbjct: 1064 ILEPGRPLVLTIQAN--LEGEDVRARITTAEPLDQAAARHQKGMRIFLRDDRALSSVQQR 1121

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               R       +G++ LI +   G+ E+E+ L D Y  +P++A  L  + G+ +V
Sbjct: 1122 LTLR------GEGEVSLILILDGGEREVEVRLKDRYQATPQVAGALRAVPGVVQV 1170


>gi|170744048|ref|YP_001772703.1| DNA polymerase III subunit alpha [Methylobacterium sp. 4-46]
 gi|168198322|gb|ACA20269.1| DNA polymerase III, alpha subunit [Methylobacterium sp. 4-46]
          Length = 1168

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   +   + +    +   +    R+   E L++        +R+YL+D  P+  + + 
Sbjct: 1059 LLEPGRALALQLQASAE--GEDVRARIQTCEPLDQAVARYQKGMRIYLRDERPIPSVQQR 1116

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               R       +G++ LI +   G+ E+E+ L D Y  SP+IA  L  + G+ +V
Sbjct: 1117 LTTR------GEGEVSLILILDGGEREVEVKLRDRYQASPQIAGALRAVPGVVQV 1165


>gi|188580262|ref|YP_001923707.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001]
 gi|179343760|gb|ACB79172.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001]
          Length = 1173

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   +P ++ +     L  +    R+   E L++ +      +R++L+D   L  + + 
Sbjct: 1064 ILEPGRPLVLTIQAN--LEGEDVRARITTAEPLDQAAARHQKGMRIFLRDDRALSSVQQR 1121

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               R       +G++ LI +   G+ E+E+ L D Y  +P++A  L  + G+ +V
Sbjct: 1122 LTLR------GEGEVSLILILDGGEREVEVRLKDRYQATPQVAGALRAVPGVVQV 1170


>gi|218529177|ref|YP_002419993.1| DNA polymerase III subunit alpha [Methylobacterium chloromethanicum
            CM4]
 gi|218521480|gb|ACK82065.1| DNA polymerase III, alpha subunit [Methylobacterium chloromethanicum
            CM4]
          Length = 1173

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   +P ++ +     L  +    R+   E L++ +      +R++L+D   L  + + 
Sbjct: 1064 ILEPGRPLVLTIQAN--LEGEDVRARITTAEPLDQAAARHQKGMRIFLRDDRALSSVQQR 1121

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               R       +G++ LI +   G+ E+E+ L D Y  +P++A  L  + G+ +V
Sbjct: 1122 LTLR------GEGEVSLILILDGGEREVEVRLKDRYQATPQVAGALRAVPGVVQV 1170


>gi|163850481|ref|YP_001638524.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1]
 gi|240137543|ref|YP_002962014.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1]
 gi|163662086|gb|ABY29453.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1]
 gi|240007511|gb|ACS38737.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1]
          Length = 1173

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   +P ++ +     L  +    R+   E L++ +      +R++L+D   L  + + 
Sbjct: 1064 ILEPGRPLVLTIQAN--LEGEDVRARITTAEPLDQAAARHQKGMRIFLRDDRALSSVQQR 1121

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               R       +G++ LI +   G+ E+E+ L D Y  +P++A  L  + G+ +V
Sbjct: 1122 LTLR------GEGEVSLILILDGGEREVEVRLKDRYQATPQVAGALRAVPGVVQV 1170


>gi|298291824|ref|YP_003693763.1| DNA polymerase III subunit alpha [Starkeya novella DSM 506]
 gi|296928335|gb|ADH89144.1| DNA polymerase III, alpha subunit [Starkeya novella DSM 506]
          Length = 1149

 Score =  110 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   K  ++ VS E  +  +    R+   E L++ + +M   +R++L+   PL  +   
Sbjct: 1035 LLEPGKALLLQVSAE--MQGEDVRARIQTAEPLDEAASKMQKGMRIFLRSPDPLDSVASR 1092

Query: 124  FENRQTQNYDKQGKIGLIFLR-SQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
              +         G++ L+ L    G  E+E+ L   Y +SP+IA  L+ + G+ +V
Sbjct: 1093 LGS--LAGGRGDGEVALVLLLGESGATEVELKLPGRYSLSPQIAGALKAVPGVVQV 1146


>gi|118590015|ref|ZP_01547419.1| DNA polymerase III subunit alpha [Stappia aggregata IAM 12614]
 gi|118437512|gb|EAV44149.1| DNA polymerase III subunit alpha [Stappia aggregata IAM 12614]
          Length = 1154

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 67/125 (53%), Gaps = 10/125 (8%)

Query: 54   QQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQD 113
            +++LE+ +   L+  +  +++V  +  +     S+R+  V+ +++ +  +  S+RV+++D
Sbjct: 1036 REKLEQFRD-ALQAGRSVVVLVGAD--MRDDEPSLRIEQVDPIDQMAARLQKSMRVFVRD 1092

Query: 114  RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHIT 172
              P+  + K  + R       +G + +I L   G  E+E+ L   + +SPEIA  L+ + 
Sbjct: 1093 ERPIPSLAKQLQVR------GEGDVTVIVLLENGAREVEVKLPGRFRLSPEIAGALKAVP 1146

Query: 173  GITKV 177
            G+T V
Sbjct: 1147 GVTDV 1151


>gi|307942140|ref|ZP_07657491.1| DNA polymerase III subunit alpha [Roseibium sp. TrichSKD4]
 gi|307774426|gb|EFO33636.1| DNA polymerase III subunit alpha [Roseibium sp. TrichSKD4]
          Length = 1159

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 69/131 (52%), Gaps = 10/131 (7%)

Query: 48   FLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSL 107
            F  L  +++LE+ +   L   +  +++V  +  +   + SIR+  V+ ++K +  +  S+
Sbjct: 1035 FEGLLFKEKLEQFRD-ALEPGRSVVLLVGAD--MRDDKPSIRIEQVDPIDKVAANLQKSM 1091

Query: 108  RVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAF 166
             V+L+D  P+  + ++ + R       +G + +I    +G+ E+E+ L   Y +SPEIA 
Sbjct: 1092 MVFLRDERPVESLVRHLKVR------GEGNVTVIVQLDRGQREVEVKLPGRYRLSPEIAG 1145

Query: 167  DLEHITGITKV 177
             L+ + G+  V
Sbjct: 1146 ALKAVPGVMDV 1156


>gi|254505207|ref|ZP_05117358.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia
            alexandrii DFL-11]
 gi|222441278|gb|EEE47957.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia
            alexandrii DFL-11]
          Length = 1138

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 66/125 (52%), Gaps = 10/125 (8%)

Query: 54   QQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQD 113
            +++LE+ +  +L+  +  +++V  +  +     S+ +  V+ ++K +  +  S+RV+++D
Sbjct: 1020 REKLEQFRD-VLQTGRSVVVLVGAD--MRDDEPSLIIEQVDPIDKVAARLQKSMRVFVRD 1076

Query: 114  RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHIT 172
              P+  + K    R       +G + +I L   G  E+E+ L   + +SPEIA  L+ + 
Sbjct: 1077 DRPIASLAKQLTVR------GEGDVTVIVLLENGAREVEVKLPGRFRLSPEIAGALKAVP 1130

Query: 173  GITKV 177
            G+T V
Sbjct: 1131 GVTDV 1135


>gi|49474348|ref|YP_032390.1| DNA polymerase III subunit alpha [Bartonella quintana str. Toulouse]
 gi|49239852|emb|CAF26246.1| DNA polymerase III alpha subunit [Bartonella quintana str. Toulouse]
          Length = 1162

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +II VS E++   +  S+RL   +SLE ++ +    +R++++    L +I + 
Sbjct: 1053 MLEPGKSFIITVSAENR--SEGVSLRLETAQSLENEAAQHHKMMRLFIKTVDMLPQIEQN 1110

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
                   N +  G++GLI ++  G  E+EITL   Y +   +   ++ I G+  V
Sbjct: 1111 L------NPNGNGEVGLILIQEDGLREVEITLPKRYKVDSSVVSAMKSIHGVVDV 1159


>gi|121602736|ref|YP_989159.1| DNA polymerase III subunit alpha [Bartonella bacilliformis KC583]
 gi|120614913|gb|ABM45514.1| DNA polymerase III, alpha subunit [Bartonella bacilliformis KC583]
          Length = 1161

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 60/115 (52%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +II VS E++   +  S+RL   +SLE+++++    +R+++     L +I + 
Sbjct: 1052 MLEPGKSFIITVSAENR--SEGISLRLETAQSLEEEAVQHHKMMRLFINTVDILSQIEQN 1109

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
                   N    G++G++ ++  G  E+E+ L   Y +S  +A  ++ + G+  V
Sbjct: 1110 L------NSGGNGEVGIVLIQENGSREVEVLLPKRYKVSLNVARAIKTLHGVLDV 1158


>gi|319898845|ref|YP_004158938.1| DNA polymerase III alpha subunit [Bartonella clarridgeiae 73]
 gi|319402809|emb|CBI76360.1| DNA polymerase III alpha subunit [Bartonella clarridgeiae 73]
          Length = 1162

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 58/115 (50%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +II V  ED+   +  S+R+  +ESLE++++     +R++++    L +I + 
Sbjct: 1053 MLESGKSFIITVIAEDR--SEGISLRIETIESLEEQALRHHKMMRLFIKTTDMLPQIKQN 1110

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
             ++         G++ LI ++  G  E+EI L   Y +   +   ++ + GI  V
Sbjct: 1111 LDS------KGNGEVALILIQEDGLREVEIALPKKYKVDSRVVNAMKALPGIVDV 1159


>gi|319408651|emb|CBI82306.1| DNA polymerase III alpha subunit [Bartonella schoenbuchensis R1]
          Length = 1162

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 60/115 (52%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +I+ V  ED+   +   +R+  ++SLEK+S+    ++R++++    L +I +Y
Sbjct: 1053 MLEPGKSFIVTVIAEDR--SEGIGLRIETIQSLEKESIRDCKTMRLFIKTADILPQIEQY 1110

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
             +          G++  I ++  G  E+E+ L   Y ++ ++A  ++ I G+  V
Sbjct: 1111 LKP------GGNGEVAFILIQENGVREVEVMLSKRYKVNLQVANAIKAIHGVIDV 1159


>gi|218459887|ref|ZP_03499978.1| DNA polymerase III subunit alpha [Rhizobium etli Kim 5]
          Length = 74

 Score =  103 bits (257), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 102 EMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPI 160
           +M  +LRVY++D  PL+ +  +       N    G +  I ++ +GK E+E+ L + Y I
Sbjct: 1   QMQKALRVYIRDSGPLKMVAGHL------NAKGDGLVSFIVIKEEGKREVEVALPEKYRI 54

Query: 161 SPEIAFDLEHITGITKV 177
           +PEIA  L    G+  V
Sbjct: 55  TPEIAAALRAAPGVVDV 71


>gi|49475735|ref|YP_033776.1| DNA polymerase III subunit alpha [Bartonella henselae str. Houston-1]
 gi|49238542|emb|CAF27778.1| DNA polymerase III alpha subunit [Bartonella henselae str. Houston-1]
          Length = 1162

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +II VS E++   +  S+RL   +SLEK++ +    +R++++    L +I   
Sbjct: 1053 ILELGKSFIITVSAENR--SEGVSLRLETAQSLEKEAAQHHKMMRLFIKTVDMLPQI--- 1107

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
               +Q  N    G++ LI ++  G  E+EITL   Y ++  +A  L+ I G+  V
Sbjct: 1108 ---QQNLNPSGNGEVALILIQEDGLREVEITLPKRYKVNSRVASALKSIQGVVDV 1159


>gi|254469239|ref|ZP_05082644.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio
            sp. JE062]
 gi|211961074|gb|EEA96269.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio
            sp. JE062]
          Length = 1144

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 56/115 (48%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL      +++V  +  +  +  S+R+  VE LEK +  +  +LR++L    P+  + + 
Sbjct: 1035 LLEPGASVVLLVQAD--MRDEEVSVRISQVEPLEKVAGRVHRTLRIFLGSDEPIASLQRQ 1092

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                        G++  + L   G+ E+E+ L  +Y +SP+++  L+ + G+  V
Sbjct: 1093 L------RRGGDGEVSCVVLLDDGQREVEVKLPGNYQLSPQLSGALKTLPGVMDV 1141


>gi|319404155|emb|CBI77748.1| DNA polymerase III alpha subunit [Bartonella rochalimae ATCC
            BAA-1498]
          Length = 1162

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +II V  ED+   +  S+R+  ++SLE+++++    +R++L+    L +I + 
Sbjct: 1053 MLEPGKSFIITVVAEDR--SEGISLRIETIQSLEEQALQCHKMMRIFLKTIDMLPQIEQN 1110

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                   N + +G++ L+ ++  G  E+EI L + Y ++  +   ++ ++G+  V
Sbjct: 1111 L------NSEGKGEVALVLIQEDGLREVEIALPERYKVNAHVVNAIKVLSGVVDV 1159


>gi|240850744|ref|YP_002972144.1| DNA polymerase III subunit alpha [Bartonella grahamii as4aup]
 gi|240267867|gb|ACS51455.1| DNA polymerase III subunit alpha [Bartonella grahamii as4aup]
          Length = 1164

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +II VS E++   +  S+R+  ++SLE++S++    +R++++    L +I + 
Sbjct: 1055 MLEPGKSFIITVSAENR--SEGVSLRIETIQSLEQESLKQHKMMRLFIKTVDMLPQIEQN 1112

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
                   N    G++GLI ++  G  E+EI L   Y ++  +A  ++ I G+  V
Sbjct: 1113 L------NLGGNGEVGLILIQEDGLREVEIALPKRYKVNSHVANAMKLIQGVVDV 1161


>gi|163868512|ref|YP_001609721.1| DNA polymerase III subunit alpha [Bartonella tribocorum CIP 105476]
 gi|161018168|emb|CAK01726.1| DNA polymerase III alpha subunit [Bartonella tribocorum CIP 105476]
          Length = 1155

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 61/115 (53%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +II VS E++   +  S+R+  ++SLE ++++    +R++++    L +I + 
Sbjct: 1046 MLEPGKSFIITVSAENR--SEGASLRIETIQSLENEALQQHKMMRLFIKTVDMLPQIEQN 1103

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
                   N    G++GLI ++  G  E+EI L   Y ++  +A  ++ I G+  V
Sbjct: 1104 L------NLGGNGEVGLILIQEDGLREVEIALPKRYKVNSHVANAMKLIQGVVDV 1152


>gi|319407174|emb|CBI80813.1| DNA polymerase III alpha subunit [Bartonella sp. 1-1C]
          Length = 1140

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +II V  ED+   +  S+R+  ++SLE+++++    +R++L+    L +I + 
Sbjct: 1031 MLELGKSFIITVIAEDR--SEGISLRIETIQSLEEQALQCHKMMRIFLKTIDTLSQIEQN 1088

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                   N + +G++ LI ++  G  E+EI L + Y ++  +   ++ ++G+  V
Sbjct: 1089 L------NSEGKGEVALILIQEDGLREVEIALPERYKVNAHVVNAIKVLSGVVDV 1137


>gi|319405608|emb|CBI79231.1| DNA polymerase III alpha subunit [Bartonella sp. AR 15-3]
          Length = 1140

 Score = 99.7 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 56/115 (48%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K +II V  ED+   +  ++R+  V+SL++ + +    +R++++    L +I + 
Sbjct: 1031 MLEPGKSFIITVIAEDR--SEGINLRIETVQSLDEDAFQYHKMMRLFIKTTDMLSQIEQN 1088

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
             ++         G+I ++ ++     E+EI L   Y +   +   ++ + G+  V
Sbjct: 1089 LDS------KGNGEIAIVLIQEDEFREVEIALPKRYKVDTRVVNAMKALPGVIDV 1137


>gi|304391642|ref|ZP_07373584.1| DNA polymerase III subunit alpha [Ahrensia sp. R2A130]
 gi|303295871|gb|EFL90229.1| DNA polymerase III subunit alpha [Ahrensia sp. R2A130]
          Length = 1166

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 9/118 (7%)

Query: 59   EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLR 118
            E    LL+  +  I+ V  ED+   +  S+R++ +  +E ++      L ++L+D SPL 
Sbjct: 1052 EAASELLQAGRSLILNVVGEDRP--EGVSLRVMMIRGIEDEAARTQYLLNIFLRDASPLP 1109

Query: 119  EIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYP-ISPEIAFDLEHITGIT 175
             I              +G + L+ +   G  E+E+ L     +SP+IA  L+ I G+ 
Sbjct: 1110 SIASQL------GKQGEGIVKLVVIDFDGGREVEVELPGKRLVSPQIANALKAIDGVV 1161


>gi|90423933|ref|YP_532303.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisB18]
 gi|90105947|gb|ABD87984.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisB18]
          Length = 1185

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 16/130 (12%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L      ++ +  E  L  +    R+L  E L+  + +    LR++L+D  PL  I K 
Sbjct: 1059 VLEPGGAVLLQLGAE--LQGEDVRARILHAEPLDDAAAKTQKGLRIFLRDTKPLESIAKR 1116

Query: 124  FE------------NRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEH 170
             +              + +     G++ L+ +    + E+E+ L   + +SP+IA  ++ 
Sbjct: 1117 LQMPEAGGGGSATPASEPKRPGGDGEVTLVMMLDL-ETEVEMKLPGRFRVSPQIAGAIKA 1175

Query: 171  ITGITKVVQV 180
            + G+  V  V
Sbjct: 1176 VQGVVDVQTV 1185


>gi|85716997|ref|ZP_01047960.1| DNA polymerase III subunit alpha [Nitrobacter sp. Nb-311A]
 gi|85696199|gb|EAQ34094.1| DNA polymerase III subunit alpha [Nitrobacter sp. Nb-311A]
          Length = 1167

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 14/128 (10%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L      ++ +  E  L  +    R+   E L+  + +    LR++L+D  PL  I + 
Sbjct: 1043 VLEPGAAVLLQLDAE--LQGEDVRARVSRAEPLDDAAAKTQKGLRIFLRDSKPLESIERR 1100

Query: 124  FENRQ----------TQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHIT 172
             +  +                 G + ++ L    + E+EI L   + +SP+IA  ++ ++
Sbjct: 1101 LQANENGDPAGGAGVAARQAGDGDVSVVMLLDL-ETEVEIKLPGRFRVSPQIAGAIKAVS 1159

Query: 173  GITKVVQV 180
            G+  V  +
Sbjct: 1160 GVVDVQAI 1167


>gi|115524557|ref|YP_781468.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisA53]
 gi|115518504|gb|ABJ06488.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisA53]
          Length = 1165

 Score = 97.4 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 16/130 (12%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L      ++ +  E  L  +    R+L  E L+  + +    LR++L+D  PL  I K 
Sbjct: 1039 VLEPGAAVLMQLGAE--LQGEDVRARILQAEPLDDAAAKTQKGLRIFLRDTKPLDSIEKR 1096

Query: 124  FENR------------QTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEH 170
             ++             +       G + L+ +    + E+E+ L   + +SP+IA  ++ 
Sbjct: 1097 LKSPDAAAIPAAPAAGRRSGGAGDGDVTLVMMLDL-ETEVEMKLPGRFRVSPQIAGAIKA 1155

Query: 171  ITGITKVVQV 180
            ++G+  V  V
Sbjct: 1156 VSGVVDVQTV 1165


>gi|75676051|ref|YP_318472.1| DNA polymerase III subunit alpha [Nitrobacter winogradskyi Nb-255]
 gi|74420921|gb|ABA05120.1| DNA polymerase III, alpha subunit [Nitrobacter winogradskyi Nb-255]
          Length = 1168

 Score = 97.4 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 15/129 (11%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L      ++ +  E  L  +    R+   E L+  + +    LR++L+D  PL  I K 
Sbjct: 1043 VLEPGAAVLLQLDAE--LQGEEVRARVSRAEPLDDAAAKTQKGLRIFLRDSRPLESIEKR 1100

Query: 124  FENR-----------QTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHI 171
             +                    +G++ L+ +    + E+EI L   + +SP+IA  ++ +
Sbjct: 1101 LQANDNGDPAGAAKVPASRQAGEGEVSLVMMLDL-ETEVEIKLPGRFRVSPQIAGAIKAV 1159

Query: 172  TGITKVVQV 180
            TG+  V  +
Sbjct: 1160 TGVVDVQAI 1168


>gi|92117240|ref|YP_576969.1| DNA polymerase III subunit alpha [Nitrobacter hamburgensis X14]
 gi|91800134|gb|ABE62509.1| DNA polymerase III, alpha subunit [Nitrobacter hamburgensis X14]
          Length = 1168

 Score = 94.3 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 15/129 (11%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L      ++ +  E  L       R+L  E L+  + +    LR++L+D  PL  I + 
Sbjct: 1043 VLEPGAAVLMQLGAE--LQGDEVRARVLHAEPLDDAAAKTQRGLRIFLRDTRPLDSIVRR 1100

Query: 124  FENRQ-----------TQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHI 171
             +  +                  G + L+ L    + E+EI L   + +SP++A  ++ +
Sbjct: 1101 LQTPENDGPAGAAKVPASRQSGDGDVSLVMLLDL-ETEVEIKLPGRFRVSPQVAGAIKAV 1159

Query: 172  TGITKVVQV 180
            +G+  V  +
Sbjct: 1160 SGVVDVQAI 1168


>gi|209885082|ref|YP_002288939.1| DNA polymerase III subunit alpha [Oligotropha carboxidovorans OM5]
 gi|209873278|gb|ACI93074.1| DNA polymerase III subunit alpha [Oligotropha carboxidovorans OM5]
          Length = 1157

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 8/119 (6%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL      ++ +S E  L  +    R+  VE L++ + +   +L+++L+D  PL  I + 
Sbjct: 1039 LLEPGLAVLLQLSAE--LQGEDVRARIANVELLDQAAAKTSMALKIFLRDDKPLESIRRR 1096

Query: 124  FENRQTQNYDKQ----GKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
             E+             G++ L+ +    + E+E+ L D Y +SP+IA  L+ ITG+  V
Sbjct: 1097 LEDHARGGGAGSSARAGEVTLVMMLDL-ETEVEMRLRDRYKVSPQIAGALKAITGVVDV 1154


>gi|148255875|ref|YP_001240460.1| DNA polymerase III subunit alpha [Bradyrhizobium sp. BTAi1]
 gi|146408048|gb|ABQ36554.1| DNA polymerase III, alpha subunit [Bradyrhizobium sp. BTAi1]
          Length = 1173

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 20/134 (14%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L      ++ +  E  L  +    R+L  E L+  + +    LR++L+D  PL  I K 
Sbjct: 1043 VLEPGAAVLLQLGAE--LQGEDVRARVLHAEPLDDAAAKTQRGLRIFLRDTKPLDSIVKR 1100

Query: 124  FENRQTQNYD----------------KQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAF 166
             +  +                      +G++ L+ +    + E+E+ L   + +SP+IA 
Sbjct: 1101 LQGPEAAANGAGGPAKSAAPPLAPRAGEGEVSLVMMLDL-ETEVEMKLPGRFKVSPQIAG 1159

Query: 167  DLEHITGITKVVQV 180
             ++ +TG+  V Q+
Sbjct: 1160 AIKAVTGVVDVQQL 1173


>gi|323136417|ref|ZP_08071499.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242]
 gi|322398491|gb|EFY01011.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242]
          Length = 1153

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L +    ++ +S    +  +    R++ VE L   +      LR+ ++D+SPL  I   
Sbjct: 1044 VLEKGAAVLVTLSAS--VEGEDVRARIVAVEPLANAAARAQKGLRIVVRDQSPLDRIKNK 1101

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                       +G++ L+  R     EIEI L   YP++ ++A  L  I G+  V
Sbjct: 1102 LT------GKGEGEVSLLIKRDVAPEEIEIRLPGSYPVNAQVASALRAIPGVVDV 1150


>gi|296447359|ref|ZP_06889286.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b]
 gi|296255138|gb|EFH02238.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b]
          Length = 1150

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 9/118 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL +    ++ +S    +  +    R+  VE L     +    LR++L+D +PL +I   
Sbjct: 1041 LLEKGATVMVTLSAS--VEGEDVRARITAVEPLAAAVAKTQKGLRIFLRDAAPLDKIKSR 1098

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180
               R       +G++ L+    +G  E+EI L   Y +SP++A  L+ I G+T V  V
Sbjct: 1099 LSAR------GEGEVSLVVSLERGASEVEIKLPGGYTVSPDMAGALQTIPGVTAVEHV 1150


>gi|27379977|ref|NP_771506.1| DNA polymerase III subunit alpha [Bradyrhizobium japonicum USDA 110]
 gi|27353130|dbj|BAC50131.1| DNA polymerase III alpha chain [Bradyrhizobium japonicum USDA 110]
          Length = 1167

 Score = 90.5 bits (223), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 20/134 (14%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L      ++ +  E  L  +    R+L  E L+  + +    LR++L+D   L  I K 
Sbjct: 1037 VLEPGAAVLLQLGAE--LQGEDVRARVLHAEPLDDAAAKTQKGLRIFLRDTKALESIAKR 1094

Query: 124  FENRQT----------------QNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAF 166
                +                    +  G++ L+ +    + E+E+ L   + +SP+IA 
Sbjct: 1095 LAGPEMASSNGAAPKVGSPGIAPRSNGDGEVLLVMMLDL-ETEVEMKLPGRFKVSPQIAG 1153

Query: 167  DLEHITGITKVVQV 180
             ++ + G+  V Q+
Sbjct: 1154 AIKAVAGVVDVQQL 1167


>gi|182678571|ref|YP_001832717.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica
            ATCC 9039]
 gi|182634454|gb|ACB95228.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica
            ATCC 9039]
          Length = 1159

 Score = 89.3 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 68/143 (47%), Gaps = 12/143 (8%)

Query: 39   LQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK 98
            +Q +++   + ++  Q+ L + +  +L +    ++ +     +  +    R+L VE L++
Sbjct: 1028 VQLSDQSGQYEAILFQESLNQYRD-MLEKGSAVLLALQAN--VDGEDVRARILSVEPLDQ 1084

Query: 99   KSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DH 157
             +  +   LRV++++   L  + +    R        G+I LI + + G  E+E+ L   
Sbjct: 1085 AASRIQKGLRVFVRNEDSLASVAQKLTTR------GDGEISLILMTNGG--EVEVRLPGT 1136

Query: 158  YPISPEIAFDLEHITGITKVVQV 180
            + +S ++A  L+ I GI  V  +
Sbjct: 1137 FNVSAQLAGSLKTIPGIVAVEPI 1159


>gi|146341074|ref|YP_001206122.1| DNA polymerase III subunit alpha [Bradyrhizobium sp. ORS278]
 gi|146193880|emb|CAL77897.1| DNA polymerase III, alpha subunit [Bradyrhizobium sp. ORS278]
          Length = 1174

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 59/136 (43%), Gaps = 22/136 (16%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L      ++ +  E  L  +    R+L  E L+  + +    LR++L+D  PL  I K 
Sbjct: 1042 VLEPGAAVLLQLGAE--LQGEDVRARVLHAEPLDDAAAKTQRGLRIFLRDTKPLDSIVKR 1099

Query: 124  FE------------------NRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEI 164
             +                      +    +G++ L+ +    + E+E+ L   + +SP+I
Sbjct: 1100 LQGDGAAANGNGAVAKGPATAPPPRAAAGEGEVSLVMMLDL-ETEVEMKLPGRFKVSPQI 1158

Query: 165  AFDLEHITGITKVVQV 180
            A  ++ +TG+ +V Q+
Sbjct: 1159 AGAIKAVTGVVEVQQL 1174


>gi|170748452|ref|YP_001754712.1| DNA polymerase III, alpha subunit [Methylobacterium radiotolerans JCM
            2831]
 gi|170654974|gb|ACB24029.1| DNA polymerase III, alpha subunit [Methylobacterium radiotolerans JCM
            2831]
          Length = 1172

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 9/115 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   +P ++ +     L  +    R+L  E L++        +R++L D   +  + + 
Sbjct: 1063 ILEPGRPLVLQLQAN--LEGEDVRARILTAEPLDQAVARHQKGIRIHLSDPRGVAPVQQR 1120

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               R       + ++ LI     G+ E+EI L   +  SP +A  L  + G+ +V
Sbjct: 1121 LSMR------GESEVSLILKLDGGEREVEIRLPGKFQASPALAGQLRTVPGVVQV 1169


>gi|316933919|ref|YP_004108901.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris DX-1]
 gi|315601633|gb|ADU44168.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris DX-1]
          Length = 1151

 Score = 83.9 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 6/115 (5%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L      ++ +  E  L  +    R+L  E L+  + +    LR++L+D  PL  + K 
Sbjct: 1039 VLEPGAAVLMQLGAE--LQGEDVRARVLHAEPLDAAAAKTQKGLRIFLRDTKPLESLTKR 1096

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
             +  +++       + L+ LR   + E+E  +   + +SP+IA  ++ ++G+  V
Sbjct: 1097 LQPPESRAAGGN--VALV-LRLDPQTEVEFEIPGRFQVSPQIAGAIKAVSGVEHV 1148


>gi|299135003|ref|ZP_07028194.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2]
 gi|298589980|gb|EFI50184.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2]
          Length = 1135

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 5/117 (4%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L      ++ ++ E  L  +    R+  VE L++ + +   +L+++L+D  P+  I + 
Sbjct: 1018 MLEPGLVVLLQLAAE--LQGEDVRARINNVELLDQAAAKTPMALKIFLRDGKPVESIRRR 1075

Query: 124  FENRQTQNYDKQGKIG--LIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
             E+       + G  G   + +    + E+++ L   + +SP+IA  L+ ITG+  V
Sbjct: 1076 LEDHAQGAAARSGSAGEVTVVMMLDLETEVDMKLPGRFKVSPQIAGALKAITGVVDV 1132


>gi|91977328|ref|YP_569987.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisB5]
 gi|91683784|gb|ABE40086.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisB5]
          Length = 1151

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L      ++ +  E  L  +    R+L  E L+  + +    LR++L+D  PL  I K 
Sbjct: 1039 VLEPGAAVLLQLGAE--LQGEDVRARVLHAEPLDAAAAKTQKGLRIFLRDTKPLDSISKR 1096

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
             +  +T+       I L+ LR   + E+E  +   + +SP+IA  ++ + G+  V
Sbjct: 1097 LQPPETKVAGGN--IALV-LRLDPQTEVEFEIPGRFQVSPQIAGAIKAVIGVEHV 1148


>gi|86749719|ref|YP_486215.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris HaA2]
 gi|86572747|gb|ABD07304.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris HaA2]
          Length = 1151

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 6/112 (5%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L      ++ +  E  L  +    R+L  E L+  + +    LR++L+D  PL  I K 
Sbjct: 1039 VLEPGAAVLLQLGAE--LQGEDVRARVLHAEPLDAAAAKTQKGLRIFLRDTKPLDSITKR 1096

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGI 174
             +  +++       I L+ LR     E+E  L   + +SP+IA  ++ +TG+
Sbjct: 1097 LQPPESKVSGGN--IALV-LRLDPHTEVEFELPGRFQVSPQIAGAIKAVTGV 1145


>gi|192291642|ref|YP_001992247.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris TIE-1]
 gi|192285391|gb|ACF01772.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris TIE-1]
          Length = 1151

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L      ++ +  E  L  +    R+L  E L+  + +    LR++L+D   L  + K 
Sbjct: 1039 VLEPGAAVLMQLGAE--LQGEDVRARVLHAEPLDAAAAKTQKGLRIFLRDTKFLDSVVKR 1096

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
             +  +T+       I L+ LR   + E+E  +   Y +SP+IA  ++ +TG+  V
Sbjct: 1097 LQPPETKVAGGN--IALV-LRLDPQTEVEFDIPGRYHVSPQIAGAIKAVTGVEHV 1148


>gi|39935989|ref|NP_948265.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris CGA009]
 gi|39649843|emb|CAE28365.1| DNA polymerase III alpha subunit [Rhodopseudomonas palustris CGA009]
          Length = 1151

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L      ++ +  E  L  +    R+L  E L+  + +    LR++L+D   L  + K 
Sbjct: 1039 VLEPGAAVLMQLGAE--LQGEDVRARVLHAEPLDAAAAKTQKGLRIFLRDTKFLDSVVKR 1096

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
             +  +T+       I L+ LR   + E+E  +   Y +SP+IA  ++ +TG+  V
Sbjct: 1097 LQPPETKVAGGN--IALV-LRLDPQTEVEFDIPGRYHVSPQIAGAIKAVTGVEHV 1148


>gi|217977860|ref|YP_002362007.1| DNA polymerase III, alpha subunit [Methylocella silvestris BL2]
 gi|217503236|gb|ACK50645.1| DNA polymerase III, alpha subunit [Methylocella silvestris BL2]
          Length = 1152

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 11/118 (9%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL +    ++V+     +       R++  E L+  +  +   LR+++ D  PL +I   
Sbjct: 1045 LLEKGASLLLVLQAA--VEGDEVRARIVSAEPLDHAASRVQKGLRIFVADDKPLDQI--- 1099

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180
               +Q+      G++ LI      + EIE+ L   Y +S + A  L+ I GI  V  V
Sbjct: 1100 ---KQSLRPQGDGEVALIL--QTPECEIELKLPGKYGVSAQSAGALKAIPGILAVEHV 1152


>gi|154253636|ref|YP_001414460.1| DNA polymerase III subunit alpha [Parvibaculum lavamentivorans DS-1]
 gi|154157586|gb|ABS64803.1| DNA polymerase III, alpha subunit [Parvibaculum lavamentivorans DS-1]
          Length = 1139

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 56/119 (47%), Gaps = 10/119 (8%)

Query: 63   RLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHK 122
            +L+      ++ V  E +   +   +R   + S+++   +    L+++++D+S +  +  
Sbjct: 1030 QLMEPGSAVVLNV--EIERIGEEVKLRAQSLRSVDEVVKDTGAGLKIFIEDKSSIEPLKS 1087

Query: 123  YFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180
                R       +G + LI +   G  E+E+ L D Y ++P++   ++ + GI ++  +
Sbjct: 1088 RLAER------GKGIVSLILMTEGGG-EVELKLKDRYRVTPQLRGAIKSVPGIVEIQDI 1139


>gi|288962247|ref|YP_003452542.1| DNA polymerase III subunit alpha [Azospirillum sp. B510]
 gi|288914513|dbj|BAI75998.1| DNA polymerase III subunit alpha [Azospirillum sp. B510]
          Length = 1167

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 8/118 (6%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   +P ++ V  +  L+ +   +    ++ LE+    +   LRV L+D SP+     +
Sbjct: 1057 LLEPGRPVLMTVDAQ--LNGEEVRLTCQEIKPLEEAVASVSAGLRVVLRDPSPIE----H 1110

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180
                  +    + +I  + +      EIEI L   Y I+ +    L+ + G+ +V ++
Sbjct: 1111 LRATLDRLSRGKSRIN-VLVEVDPLKEIEIELPGSYTITAQSRSALKAVPGVVEVAEL 1167


>gi|83592917|ref|YP_426669.1| DNA polymerase III subunit alpha [Rhodospirillum rubrum ATCC 11170]
 gi|83575831|gb|ABC22382.1| DNA polymerase III, alpha subunit [Rhodospirillum rubrum ATCC 11170]
          Length = 1170

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 9/118 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   +P +  V  + +L  +   +    +E L+         ++V   D  P+  +   
Sbjct: 1061 LLDSGRPLL--VRADARLEGEEVRLLAQAIELLDDAVARAARRIKVSFSDSGPIPRLA-- 1116

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
                +    D  G   ++ +   G  E+E  LD  + +  E    L ++ G+ +V +V
Sbjct: 1117 ----EIIRADGPGNRNILLVADLGDREVEFRLDGGFALRSETLAALRNVPGVGEVREV 1170


>gi|144899840|emb|CAM76704.1| DNA polymerase III alpha subunit [Magnetospirillum gryphiswaldense
            MSR-1]
          Length = 1159

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 54/118 (45%), Gaps = 9/118 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L    P +  V    +L  ++  +    + SL++++ +    L+++++D +P+  +   
Sbjct: 1050 ILEAGGPLLFEVDA--RLEEEQLRLTCQRIASLDQEAAKAAAGLKIFIRDDAPIPTLV-- 1105

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180
                Q    + +G+  +  +   G  E+E+ L +   +SP     L  ++G+  V ++
Sbjct: 1106 ----QLIAKEAKGRNRITIVSQLGTREVEVGLKNTISLSPGFMGALRSVSGVVDVEEI 1159


>gi|260576275|ref|ZP_05844267.1| DNA polymerase III, alpha subunit [Rhodobacter sp. SW2]
 gi|259021543|gb|EEW24847.1| DNA polymerase III, alpha subunit [Rhodobacter sp. SW2]
          Length = 1144

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 65   LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME-MLDSLRVYLQDRSPLREIHKY 123
            L      ++ V  E  L  +   +    V+ +++ + E    SLR++L            
Sbjct: 1032 LEPGMNVVLTVKAE--LEGETLKLLANAVQPIDQVAAEAGGASLRIHLN--RAEAAASVA 1087

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
                + +N   +G+I ++ +  Q   EI++TL   YP++P+I   ++ + G+  V +V
Sbjct: 1088 ALFARVENSRSRGQI-ILCIPDQTGREIDLTLPADYPVTPQIKGAIKAMPGVVLVEEV 1144


>gi|300023432|ref|YP_003756043.1| DNA polymerase III subunit alpha [Hyphomicrobium denitrificans ATCC
            51888]
 gi|299525253|gb|ADJ23722.1| DNA polymerase III, alpha subunit [Hyphomicrobium denitrificans ATCC
            51888]
          Length = 1180

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQD---RSPLREI 120
            LL    P I+ V  E         +R+  +E+L+K +  +  +LRV L            
Sbjct: 1063 LLEPGTPVIVSVEAE--RDGDTLKMRVQSIEALDKAAAGVARNLRVVLDQRECAGANGAR 1120

Query: 121  HKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQ 179
                 +R    +   G++ ++        E+++ L   Y +SP  A  +  +  + +V++
Sbjct: 1121 LAEISSRLKPTHRG-GEVRIVLPLLDRGCEVDLILPGRYDVSPLEAGRIAALPIVVEVIE 1179


>gi|163744574|ref|ZP_02151934.1| DNA polymerase III, alpha subunit [Oceanibulbus indolifex HEL-45]
 gi|161381392|gb|EDQ05801.1| DNA polymerase III, alpha subunit [Oceanibulbus indolifex HEL-45]
          Length = 1161

 Score = 58.1 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 46/119 (38%), Gaps = 5/119 (4%)

Query: 65   LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME-MLDSLRVYLQDRSPLREIHKY 123
            L      +I V  E  +   +  +    V  ++    +     LRV++     ++ +   
Sbjct: 1045 LEVGSKIVITV--EATMESDQLKLLGRSVAPIDAAVADAGSMGLRVFIDGPGAIQAVADV 1102

Query: 124  F-ENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
                RQ      +G +    +      E+E+ L   +P++P+I   +  + G+ +V ++
Sbjct: 1103 LDGARQAVKAAGKGPVQFCLMDPSLPGEVEVDLGREFPVTPQIKGAIRSLDGVMEVEEI 1161


>gi|315111547|ref|YP_508882.2| DNA polymerase III subunit alpha [Jannaschia sp. CCS1]
          Length = 1177

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 4/118 (3%)

Query: 65   LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYF 124
            L      II    E  L  ++  +    V+ ++       + LRV+++D S +  +    
Sbjct: 1062 LETGSNVII--QAEATLEAEQLKLLGRSVQPVDGAIASEANGLRVFIEDESGVASVESLL 1119

Query: 125  ENRQTQNYDK-QGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180
            E          +G I L  +      E+E+ L D +P+SP+I   L  + G+  V +V
Sbjct: 1120 ERTAGDAAKSSKGPIHLCLMAPDLPGEVEVILGDSFPVSPQIKGALRSLEGVVMVEEV 1177


>gi|88862980|gb|ABD53857.1| DNA polymerase III, alpha subunit [Jannaschia sp. CCS1]
          Length = 1155

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 4/118 (3%)

Query: 65   LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYF 124
            L      II    E  L  ++  +    V+ ++       + LRV+++D S +  +    
Sbjct: 1040 LETGSNVII--QAEATLEAEQLKLLGRSVQPVDGAIASEANGLRVFIEDESGVASVESLL 1097

Query: 125  ENRQTQNYDK-QGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180
            E          +G I L  +      E+E+ L D +P+SP+I   L  + G+  V +V
Sbjct: 1098 ERTAGDAAKSSKGPIHLCLMAPDLPGEVEVILGDSFPVSPQIKGALRSLEGVVMVEEV 1155


>gi|254466532|ref|ZP_05079943.1| DNA polymerase III, alpha subunit subfamily, putative
            [Rhodobacterales bacterium Y4I]
 gi|206687440|gb|EDZ47922.1| DNA polymerase III, alpha subunit subfamily, putative
            [Rhodobacterales bacterium Y4I]
          Length = 1148

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 57   LEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKK-SMEMLDSLRVYLQDRS 115
            LE+ +   L      +I    E  +   +  + +  V  ++   +     SLRVYL D S
Sbjct: 1025 LEKSREY-LETGAKVVIT--AEATMESDQLKLLVRSVGPVDSAIADAGRSSLRVYLSDAS 1081

Query: 116  PLREIHKYFE-NRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITG 173
             +  + +  E  +       +G++ +         ++E+ L   +PI+P+I   L+ + G
Sbjct: 1082 AVGTVAQVLEDAKAAARNASRGEVYMYLQDPGLPGDVEMDLGQAFPINPQIKGALKSLDG 1141

Query: 174  ITKVVQV 180
            +  V ++
Sbjct: 1142 VMDVEEI 1148


>gi|254488409|ref|ZP_05101614.1| DNA polymerase III, alpha subunit subfamily, putative [Roseobacter
            sp. GAI101]
 gi|214045278|gb|EEB85916.1| DNA polymerase III, alpha subunit subfamily, putative [Roseobacter
            sp. GAI101]
          Length = 1177

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 52/119 (43%), Gaps = 5/119 (4%)

Query: 65   LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME-MLDSLRVYLQDRSPLREIHKY 123
            L      +++V  E  +   +  +    V +++    +     LR+++Q+ + ++ +   
Sbjct: 1061 LETGSKVVVMV--EATMESDQLKLLGRSVAAIDDVVADAGNMGLRIFVQEAAAIQAVADV 1118

Query: 124  F-ENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180
                R       +G I L  +      E+E+ L   YP++P+I   +  ++G+ +V ++
Sbjct: 1119 LAGARSAAKSAGKGPIQLCLIDPSLPGEVEVDLCSEYPMTPKIKGAIRSLSGVMEVEEI 1177


>gi|254463266|ref|ZP_05076682.1| DNA polymerase III, alpha subunit subfamily, putative
            [Rhodobacterales bacterium HTCC2083]
 gi|206679855|gb|EDZ44342.1| DNA polymerase III, alpha subunit subfamily, putative
            [Rhodobacteraceae bacterium HTCC2083]
          Length = 1168

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 50/119 (42%), Gaps = 5/119 (4%)

Query: 65   LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME-MLDSLRVYLQDRSPLREIHKY 123
            L      ++ V  E  +   +  +    V  ++    +    SLR+++++   +  I   
Sbjct: 1052 LETGAKVVVTV--EANMESDQLKLLGRSVAPIDVVVADAGQTSLRIFVENSGAVENIASV 1109

Query: 124  FENRQTQNYDK-QGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
                Q       +G + L  L S    E+E+ L   +P++P+I   L+ + G+ +V +V
Sbjct: 1110 LTRAQETVKQGARGPVLLCLLDSGLPGEVEVDLGREFPVNPQIKGALKSLDGVMQVEEV 1168


>gi|296536131|ref|ZP_06898260.1| DNA-directed DNA polymerase III alpha subunit [Roseomonas cervicalis
            ATCC 49957]
 gi|296263543|gb|EFH10039.1| DNA-directed DNA polymerase III alpha subunit [Roseomonas cervicalis
            ATCC 49957]
          Length = 1147

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 10/116 (8%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L E    +  VS E ++  +   +    +E L+K +  +   +R++L+D   +  I   
Sbjct: 1037 ILTEGNAVL--VSCEARMEGETLRLTAQGIEELDKAASGVGQQIRLWLEDAVAIEPI--- 1091

Query: 124  FENRQTQNYDKQGKIGLIFL-RSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
               R+    + QG+  +I + R     E+E+ L   + +SP +A  L+ + G+  V
Sbjct: 1092 ---REMLAREGQGRGRVILIPRLGEGQELEVVLPGAWNVSPRLAQALKVVPGVASV 1144


>gi|46202448|ref|ZP_00208519.1| COG0587: DNA polymerase III, alpha subunit [Magnetospirillum
            magnetotacticum MS-1]
          Length = 1115

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 9/118 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL    P +I V    KL  ++  +    + SL++++ +    +R+ + D S +R++ + 
Sbjct: 1006 LLDAGGPLLIDVDA--KLEEEQLRMTCQRIASLDQEAAKAAAGIRIIISDDSAIRQLAEL 1063

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
                       + ++ ++        E+E+ L  +  +SP+    L  I GI +V ++
Sbjct: 1064 INGE----ARGRNRVAIVARADN--REVELGLKSNITLSPKFMGSLRSIPGIVEVEEI 1115


>gi|209964522|ref|YP_002297437.1| DNA polymerase III subunit alpha [Rhodospirillum centenum SW]
 gi|209957988|gb|ACI98624.1| DNA polymerase III alpha subunit [Rhodospirillum centenum SW]
          Length = 1165

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 46/115 (40%), Gaps = 8/115 (6%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   +  +++V  +   + +   +    V  LE++       +R+ ++D +PL  +   
Sbjct: 1055 LLEAGRAVLMLVDVQQ--NGEELRLTGSQVLPLEEEVARTAAGMRIVVKDETPLSTLQSV 1112

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
             +  +      +G+I  + +      E+EI L     I       ++ I G+  V
Sbjct: 1113 LKRLRP----GRGRIQ-VAVEVDPMTEVEILLPQALMIDASSRAAIKSIPGVVDV 1162


>gi|84683471|ref|ZP_01011374.1| DNA polymerase III, alpha subunit [Maritimibacter alkaliphilus
            HTCC2654]
 gi|84668214|gb|EAQ14681.1| DNA polymerase III, alpha subunit [Rhodobacterales bacterium
            HTCC2654]
          Length = 1171

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 55/125 (44%), Gaps = 5/125 (4%)

Query: 59   EEKPRLLREKKPYIIVVSQE-DKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPL 117
            E+  + L      ++ V    +   L+  +     V+++ + +  M  +LRVY+     +
Sbjct: 1049 EQNRQFLETGMNVVVTVEATYESEQLKLLARSAAPVDTVVQDAGGM--ALRVYVDSPGVV 1106

Query: 118  REIHKYFEN-RQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGIT 175
              +    E+ R+     + G +    +      E+E+ +   +P++P+I   L+ ++G+ 
Sbjct: 1107 ATVAGLLESAREQAKGARPGAVSFCLMDPTLPGEVEMDIGAEFPLNPQIKGALKSLSGVV 1166

Query: 176  KVVQV 180
             V +V
Sbjct: 1167 DVEEV 1171


>gi|163740552|ref|ZP_02147946.1| DNA polymerase III subunit alpha [Phaeobacter gallaeciensis 2.10]
 gi|161386410|gb|EDQ10785.1| DNA polymerase III subunit alpha [Phaeobacter gallaeciensis 2.10]
          Length = 1170

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 5/125 (4%)

Query: 59   EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKK-SMEMLDSLRVYLQDRSPL 117
            E+    L      +I    E  +   +  + +  V  ++   +     SLRVY+   S +
Sbjct: 1048 EKSREFLETGAKVVIT--AEATMESDQLKLLVRSVGPVDAAIADAGRSSLRVYISQASAV 1105

Query: 118  REIHKYFE-NRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGIT 175
              + +  E  +       +G++ +         ++E+ L   +PI+P+I   L+ + G+ 
Sbjct: 1106 ATVAQVLEDAKSAARNASRGEVYMYLQDPGLPGDVEMDLGQPFPINPQIKGALKSLDGVM 1165

Query: 176  KVVQV 180
             V ++
Sbjct: 1166 DVEEI 1170


>gi|163737024|ref|ZP_02144442.1| DNA polymerase III, alpha subunit [Phaeobacter gallaeciensis BS107]
 gi|161389628|gb|EDQ13979.1| DNA polymerase III, alpha subunit [Phaeobacter gallaeciensis BS107]
          Length = 1170

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 5/125 (4%)

Query: 59   EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKK-SMEMLDSLRVYLQDRSPL 117
            E+    L      +I    E  +   +  + +  V  ++   +     SLRVY+   S +
Sbjct: 1048 EKSREFLETGAKVVIT--AEATMESDQLKLLVRSVGPVDAAIADAGRSSLRVYISQASAV 1105

Query: 118  REIHKYFE-NRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGIT 175
              + +  E  +       +G++ +         ++E+ L   +PI+P+I   L+ + G+ 
Sbjct: 1106 ATVAQVLEDAKSAARNASRGEVYMYLQDPGLPGDVEMDLGQPFPINPQIKGALKSLDGVM 1165

Query: 176  KVVQV 180
             V ++
Sbjct: 1166 DVEEI 1170


>gi|126725821|ref|ZP_01741663.1| DNA polymerase III subunit alpha [Rhodobacterales bacterium HTCC2150]
 gi|126705025|gb|EBA04116.1| DNA polymerase III subunit alpha [Rhodobacterales bacterium HTCC2150]
          Length = 1170

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 54/125 (43%), Gaps = 5/125 (4%)

Query: 59   EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME-MLDSLRVYLQDRSPL 117
            E+    L      II V  E  +   +  +    V  ++          LR++++D   +
Sbjct: 1048 EKTREFLEVGAKVIITV--EATMEADQLKLLARGVSPIDAAVARAGPVGLRIFIEDEEAI 1105

Query: 118  REIHKYFE-NRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGIT 175
              +    E +++  +   +G I L  L      E+E++L   +P++P +   ++ I+G++
Sbjct: 1106 APVASLLERSKKESSMGGRGPIHLCLLHPDLPGEVEMSLGAEFPVTPVVKGAIKAISGVS 1165

Query: 176  KVVQV 180
             + ++
Sbjct: 1166 TIEEI 1170


>gi|126737384|ref|ZP_01753119.1| DNA polymerase III subunit alpha [Roseobacter sp. SK209-2-6]
 gi|126721969|gb|EBA18672.1| DNA polymerase III subunit alpha [Roseobacter sp. SK209-2-6]
          Length = 1170

 Score = 53.9 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 57   LEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKK-SMEMLDSLRVYLQDRS 115
            LE+ +   L      +I    E  +   +  + +     ++   +     SLRVYL+D +
Sbjct: 1047 LEKAREY-LETGSKVVIT--AEATMESDQLKLLMRSAGPVDAAIADAGRSSLRVYLEDAT 1103

Query: 116  PLREIHKYFE-NRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITG 173
             +  + +     +        G I L         ++E+ L   +PI+P+I   L+ + G
Sbjct: 1104 AVSTVARVLGDAKSAAKSASPGAIYLYLQDPGLPGDVEMDLGQMFPINPQIKGALKSLEG 1163

Query: 174  ITKVVQV 180
            + +V ++
Sbjct: 1164 VMEVEEI 1170


>gi|254477258|ref|ZP_05090644.1| DNA polymerase III, alpha subunit subfamily, putative [Ruegeria sp.
            R11]
 gi|214031501|gb|EEB72336.1| DNA polymerase III, alpha subunit subfamily, putative [Ruegeria sp.
            R11]
          Length = 1170

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 52/125 (41%), Gaps = 5/125 (4%)

Query: 59   EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKK-SMEMLDSLRVYLQDRSPL 117
            E+    L      +I    E  +   +  + +  V  ++   +     SLRVY+ D   +
Sbjct: 1048 EKSREFLDTGAKVVIT--AEATMESDQLKLLVRSVGPVDAAIADAGRSSLRVYVSDAKAV 1105

Query: 118  REIHKYFE-NRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGIT 175
              + +  E  ++      +G++ +         ++E+ L   +PI+P+I   L+ + G+ 
Sbjct: 1106 ATVAQVLEDAKKAARNASRGEVYMYLQDPALPGDVEMDLGQPFPINPQIKGALKSLDGVM 1165

Query: 176  KVVQV 180
             V ++
Sbjct: 1166 DVEEI 1170


>gi|85704828|ref|ZP_01035929.1| DNA polymerase III subunit alpha [Roseovarius sp. 217]
 gi|85670646|gb|EAQ25506.1| DNA polymerase III subunit alpha [Roseovarius sp. 217]
          Length = 1166

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 47/125 (37%), Gaps = 5/125 (4%)

Query: 59   EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK-KSMEMLDSLRVYLQDRSPL 117
            E+    L      +I    E  +   +  +    V+ ++   +      LR+++     +
Sbjct: 1044 EKCREFLETGAQVVIT--AEATMEADQLKLLCRAVQPIDGMVAGAGAVGLRIFVDQPGAI 1101

Query: 118  REIHKYFENRQTQ-NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGIT 175
              +    +         + G I    + +    E+EI     YP++P+I   ++ +TG+ 
Sbjct: 1102 GSVAAVLQGASQSARGARPGPIHFCLMGAGLPGEVEIDSGAEYPVTPQIKGAIKTLTGVV 1161

Query: 176  KVVQV 180
             V ++
Sbjct: 1162 MVEEI 1166


>gi|315111546|ref|YP_421932.2| DNA polymerase III subunit alpha [Magnetospirillum magneticum AMB-1]
          Length = 1154

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 9/118 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL    P +I V    KL   +  +    + SL++++ +    +RV + D S +R++   
Sbjct: 1045 LLDAGGPLLIDVDA--KLEEDQLRMTCQRIASLDQEAAKAAAGIRVIISDDSAIRQLADL 1102

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
                       +  + ++        E+E+ L  +  +SP+    L  I GI +V ++
Sbjct: 1103 INGE----ARGRNLVRIVARADN--REVELGLKSNITLSPKFMGSLRSIPGIAEVEEI 1154


>gi|149201165|ref|ZP_01878140.1| DNA polymerase III subunit alpha [Roseovarius sp. TM1035]
 gi|149145498|gb|EDM33524.1| DNA polymerase III subunit alpha [Roseovarius sp. TM1035]
          Length = 1166

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 48/125 (38%), Gaps = 5/125 (4%)

Query: 59   EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK-KSMEMLDSLRVYLQDRSPL 117
            E+    L      +I    E  L   +  +    V+ ++   +      LR+++     +
Sbjct: 1044 EKCREFLETGAQVVIT--AEATLEADQLKLLCRAVQPIDGMVAGAGAVGLRIFVDQPGAI 1101

Query: 118  REIHKYFE-NRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGIT 175
              +    +   Q     + G I    + +    E+EI     YP++P+I   ++ +TG+ 
Sbjct: 1102 GSVAAVLQGASQAARGARPGPIHFCLMGAGLLGEVEIDSGAEYPVTPQIKGAIKSLTGVV 1161

Query: 176  KVVQV 180
             V ++
Sbjct: 1162 MVEEI 1166


>gi|296116516|ref|ZP_06835126.1| DNA polymerase III subunit alpha [Gluconacetobacter hansenii ATCC
            23769]
 gi|295976728|gb|EFG83496.1| DNA polymerase III subunit alpha [Gluconacetobacter hansenii ATCC
            23769]
          Length = 1142

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L      +  V+ E +L  +   I    V  LE+ + +    LR++      +  I   
Sbjct: 1032 ILSAGNAVV--VTAELRLDGEALRITASDVMELEQAAADAAAELRIWFDRADAIVPIRDI 1089

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQ 179
             +         +G+I ++        ++E+TL + Y ++P IA  ++ I G+ +V Q
Sbjct: 1090 LQGHSG----GRGRI-ILLPSVAETRDVEVTLGERYRVTPRIAQMIKSIEGVGRVEQ 1141


>gi|86136285|ref|ZP_01054864.1| DNA polymerase III subunit alpha [Roseobacter sp. MED193]
 gi|85827159|gb|EAQ47355.1| DNA polymerase III subunit alpha [Roseobacter sp. MED193]
          Length = 1170

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 57   LEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME-MLDSLRVYLQDRS 115
            LE+ +   L      +I    E  +   +  + +     ++    +    SLR+YL D +
Sbjct: 1047 LEKAREY-LDTGSKVVIT--AEATMESDQLKLLMRSAGPVDAAVADAGRSSLRIYLDDAA 1103

Query: 116  PLREIHKYFE-NRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITG 173
             +  +    E  ++       G+I L    S    ++E+ L   +PI+P+I   L+ + G
Sbjct: 1104 AISTVATVLEDAKKAARSASPGEIYLYLQDSDLPGDVEMNLGAMFPINPQIKGALKSLEG 1163

Query: 174  ITKVVQV 180
            + +V ++
Sbjct: 1164 VMEVEEI 1170


>gi|82946509|dbj|BAE51373.1| DNA polymerase III, alpha subunit [Magnetospirillum magneticum AMB-1]
          Length = 1118

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 9/118 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL    P +I V    KL   +  +    + SL++++ +    +RV + D S +R++   
Sbjct: 1009 LLDAGGPLLIDVDA--KLEEDQLRMTCQRIASLDQEAAKAAAGIRVIISDDSAIRQLADL 1066

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
                       +  + ++        E+E+ L  +  +SP+    L  I GI +V ++
Sbjct: 1067 INGE----ARGRNLVRIVARADN--REVELGLKSNITLSPKFMGSLRSIPGIAEVEEI 1118


>gi|83954740|ref|ZP_00963451.1| DNA polymerase III subunit alpha [Sulfitobacter sp. NAS-14.1]
 gi|83841024|gb|EAP80195.1| DNA polymerase III subunit alpha [Sulfitobacter sp. NAS-14.1]
          Length = 1177

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 54/119 (45%), Gaps = 5/119 (4%)

Query: 65   LREKKPYIIVVSQE-DKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            L      +++V    +   L+     ++ ++++ + +  M   LR+++ D   ++ +   
Sbjct: 1061 LETGSKVVVMVEATMESDQLKLLGRSVVPIDTVVEDAGNM--GLRIFVDDAGAIQAVADV 1118

Query: 124  FENRQTQNYDK-QGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180
                ++      +G + L  +      E+E+ L   YP++P+I   +  +TG+ +V ++
Sbjct: 1119 LAGARSAARSAGKGPVQLCLMDPTLPGEVEVDLCAEYPVTPKIKGAIRSLTGVMEVEEI 1177


>gi|83943739|ref|ZP_00956197.1| DNA polymerase III subunit alpha [Sulfitobacter sp. EE-36]
 gi|83845419|gb|EAP83298.1| DNA polymerase III subunit alpha [Sulfitobacter sp. EE-36]
          Length = 1177

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 54/119 (45%), Gaps = 5/119 (4%)

Query: 65   LREKKPYIIVVSQE-DKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            L      +++V    +   L+     ++ ++++ + +  M   LR+++ D   ++ +   
Sbjct: 1061 LETGSKVVVMVEATMESDQLKLLGRSVVPIDTVVEDAGNM--GLRIFVDDAGAIQAVADV 1118

Query: 124  FENRQTQNYDK-QGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180
                ++      +G + L  +      E+E+ L   YP++P+I   +  +TG+ +V ++
Sbjct: 1119 LAGARSAARSAGKGPVQLCLMDPTLPGEVEVDLCAEYPVTPKIKGAIRSLTGVMEVEEI 1177


>gi|254436926|ref|ZP_05050420.1| DNA polymerase III, alpha subunit subfamily, putative [Octadecabacter
            antarcticus 307]
 gi|198252372|gb|EDY76686.1| DNA polymerase III, alpha subunit subfamily, putative [Octadecabacter
            antarcticus 307]
          Length = 1172

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 4/118 (3%)

Query: 65   LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLE-KKSMEMLDSLRVYLQDRSPLREIHKY 123
            L      +I V  E  +  ++  +    V   +   +      LRV+L D + +  +   
Sbjct: 1057 LETGNQIVIQV--EATMEAEQLKLLGRSVMLADMAVANAGSSGLRVFLGDPAAISTVSDI 1114

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
             +     N        +  +      EI++ L+  +PI+P+I   L  + G+ +V ++
Sbjct: 1115 LQGAIRDNVKGGRGPVMFTIDDIELGEIDVELETQFPINPQIKGALRSLGGVIEVQEI 1172


>gi|149914036|ref|ZP_01902568.1| DNA polymerase III subunit alpha [Roseobacter sp. AzwK-3b]
 gi|149812320|gb|EDM72151.1| DNA polymerase III subunit alpha [Roseobacter sp. AzwK-3b]
          Length = 1167

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 55   QQLEEEKPRLLREKKPYIIVVSQE-DKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQD 113
            + LE+ +   L      +I V    +   L+     +  ++ +   +  M   LR++++ 
Sbjct: 1042 ETLEKSRDH-LETGAQVVITVEATMESDQLKLLGRAVSPIDGVVADAGAM--GLRIFVET 1098

Query: 114  RSPLREIHKYFENRQTQ-NYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHI 171
            +  +  +    +N  T      +G I    +      EIEI     YP++P+I   ++ +
Sbjct: 1099 QEAIPSVASVLQNAVTSVKSGGRGPIRFCLMGPSLPGEIEIDTGQDYPVTPQIKGAIKSL 1158

Query: 172  TGITKV 177
            +G+  V
Sbjct: 1159 SGVLAV 1164


>gi|259417587|ref|ZP_05741506.1| DNA polymerase III subunit alpha [Silicibacter sp. TrichCH4B]
 gi|259346493|gb|EEW58307.1| DNA polymerase III subunit alpha [Silicibacter sp. TrichCH4B]
          Length = 1166

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 57   LEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKK-SMEMLDSLRVYLQDRS 115
            LE+ +   L      +I    E  +   +  + +     ++   +     SLRVYL+  S
Sbjct: 1043 LEKSRDH-LETGSKVVIT--AEATMESDQLKLLMRLAGPVDSAIADAGRSSLRVYLESAS 1099

Query: 116  PLREIHKYFE-NRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITG 173
             +  +    E  ++       G+I +         ++E+ L   +PI+P+I   L+ + G
Sbjct: 1100 AVATVATVLEDAKKAAKNASPGEIYVYLQDPNLPGDVEMDLGQLFPINPQIKGALKSLEG 1159

Query: 174  ITKVVQV 180
            +  V ++
Sbjct: 1160 VMDVEEI 1166


>gi|99080341|ref|YP_612495.1| DNA polymerase III subunit alpha [Ruegeria sp. TM1040]
 gi|99036621|gb|ABF63233.1| DNA polymerase III alpha subunit [Ruegeria sp. TM1040]
          Length = 1166

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 57   LEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKK-SMEMLDSLRVYLQDRS 115
            LE+ +   L      +I    E  +   +  + +     ++   +     SLRVYL+  S
Sbjct: 1043 LEKSRDH-LETGSKVVIT--AEATMESDQLKLLMRSAGPVDSAIADAGRSSLRVYLESAS 1099

Query: 116  PLREIHKYFE-NRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITG 173
             +  +    E  ++       G+I +         ++E+ L   +PI+P+I   L+ + G
Sbjct: 1100 AVATVATVLEDAKKAAKNASPGEIYVYLQDPALPGDVEMDLGQLFPINPQIKGALKSLEG 1159

Query: 174  ITKVVQV 180
            +  V ++
Sbjct: 1160 VMDVEEI 1166


>gi|260432607|ref|ZP_05786578.1| DNA polymerase III subunit alpha [Silicibacter lacuscaerulensis
            ITI-1157]
 gi|260416435|gb|EEX09694.1| DNA polymerase III subunit alpha [Silicibacter lacuscaerulensis
            ITI-1157]
          Length = 1166

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 55   QQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME-MLDSLRVYLQD 113
            + LE+ +   L      ++    E  +   +  +    V   +    E     LR+++  
Sbjct: 1041 ETLEKSREY-LETGAQVVLT--AEATMEADQLKLLARSVGPADSVVAEAGATGLRIFVDQ 1097

Query: 114  RSPLREIHKYFENRQTQNYDK-QGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHI 171
               +  + +  ++      +  +G + L  +      E+E+ L   +PI+P+I   ++ +
Sbjct: 1098 PQVVSTVARVLQDAAGAARNAAKGPVHLCLMDPGLPGEVEMDLGQDFPINPQIKGAIKSL 1157

Query: 172  TGITKVVQV 180
             G+  V +V
Sbjct: 1158 DGVMDVQEV 1166


>gi|260425354|ref|ZP_05779334.1| DNA polymerase III subunit alpha [Citreicella sp. SE45]
 gi|260423294|gb|EEX16544.1| DNA polymerase III subunit alpha [Citreicella sp. SE45]
          Length = 1177

 Score = 51.2 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 5/122 (4%)

Query: 59   EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDS-LRVYLQDRSPL 117
            E+   LL      ++ V  E  +   +  +       +E    +   S LR++++D   +
Sbjct: 1055 EKSRDLLETGSKVVVTV--EATMESDQLKLLARSFGPVETVVADAGASGLRIFIEDPGTV 1112

Query: 118  REIHKYFENRQTQNYD-KQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGIT 175
             ++         Q     +G + L    +    E+E+ L   +P++PEI   ++ + G+ 
Sbjct: 1113 AQVASVLSRAAEQMPKAGRGPVRLCLSAAGLPGEVEMDLRQEFPVTPEIKGAVKSLDGVL 1172

Query: 176  KV 177
             V
Sbjct: 1173 AV 1174


>gi|84500130|ref|ZP_00998396.1| DNA polymerase III, alpha subunit [Oceanicola batsensis HTCC2597]
 gi|84392064|gb|EAQ04332.1| DNA polymerase III, alpha subunit [Oceanicola batsensis HTCC2597]
          Length = 1134

 Score = 51.2 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 47/119 (39%), Gaps = 5/119 (4%)

Query: 65   LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK-KSMEMLDSLRVYLQDRSPLREIHKY 123
            L      ++ V  E  +   +  +    +  L+   +      L+++++    +  + + 
Sbjct: 1018 LDPGSMVVVTV--EATMESDQLKLLARGIAPLDTIVADAGSVGLKIFVEAAEAIPAVAEV 1075

Query: 124  FENRQTQNYD-KQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
              + Q       +G I    + +    E+EI     +P++P+I   ++ + G+  V ++
Sbjct: 1076 LTSAQEAAARVGRGPISFCLMDAGLPGEVEIDAGAEFPVTPQIKGAIKSLNGVMAVEEI 1134


>gi|254449414|ref|ZP_05062851.1| DNA polymerase III, alpha subunit [Octadecabacter antarcticus 238]
 gi|198263820|gb|EDY88090.1| DNA polymerase III, alpha subunit [Octadecabacter antarcticus 238]
          Length = 1168

 Score = 50.8 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 65   LREKKPYIIVVSQE-DKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            L      +I V    +   L+     ++  + +   +      LRV+L D + +  +   
Sbjct: 1053 LETGNQIVIQVEATMEAEQLKLLGRSVMLADMVVANA--GSSGLRVFLGDVAAISTVSDI 1110

Query: 124  FENRQTQNYDK-QGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
             +     N    +G +    +      EI++ L+  +P++P+I   L  + G+ +V ++
Sbjct: 1111 LQGAIRDNVKGGRGPVTFT-IDDIELGEIDVELETQFPVNPQIKGALRSLGGVIEVQEI 1168


>gi|255262260|ref|ZP_05341602.1| DNA polymerase III subunit alpha [Thalassiobium sp. R2A62]
 gi|255104595|gb|EET47269.1| DNA polymerase III subunit alpha [Thalassiobium sp. R2A62]
          Length = 1169

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 60   EKPRL-LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME-MLDSLRVYLQDRSPL 117
            EK R  L      ++ V  E  +   +  +    V  ++    E      +VY+ D + +
Sbjct: 1047 EKARDHLETGAQVVVTV--EATMESDQLKLLGRSVAPIDIAVAEAGATGFKVYVDDPAAI 1104

Query: 118  REIHKYFENRQTQNYDKQ-GKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGIT 175
              +    E  +T       G I    + +    E+E+ L   +P+SP+I   L+ + G+ 
Sbjct: 1105 ASVATVLEEVKTATQKANKGPILFCLMNADLPGEVEMDLGQDFPVSPQIKGALKSLGGVI 1164

Query: 176  KV 177
             V
Sbjct: 1165 TV 1166


>gi|77465552|ref|YP_355055.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides 2.4.1]
 gi|77389970|gb|ABA81154.1| DNA polymerase III alpha chain [Rhodobacter sphaeroides 2.4.1]
          Length = 1163

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 33/179 (18%)

Query: 10   NNRKGKKKPDGNH-DFLFLED---CYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLL 65
            ++R+ KK   GN   F+ L D    Y+  +            F  + EQ +       LL
Sbjct: 1010 SSRQEKKSAKGNRFAFVQLSDPTGLYECTV------------FSDVLEQAR------DLL 1051

Query: 66   REKKPYIIVVSQEDKLSLQRDSIRLLW--VESLEKKSME-MLDSLRVYLQDRSPLREIHK 122
                  ++ V      +L+ DS++LL   V  ++  + +    SLRV+L           
Sbjct: 1052 EPGGHVVLTVEA----TLEGDSLKLLARGVSPIDAVAADAGAMSLRVHL---DRAEAAAS 1104

Query: 123  YFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
                        +  + +      G  EI+I L   + +SP+I   L  + G+  V ++
Sbjct: 1105 VAALLARAQGRARAPVRICVRDPSGGQEIDIELGQDFAVSPQIRSALRAVPGVEMVEEI 1163


>gi|126463991|ref|YP_001045104.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides ATCC 17029]
 gi|126105802|gb|ABN78332.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides ATCC
            17029]
          Length = 1163

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 33/179 (18%)

Query: 10   NNRKGKKKPDGNH-DFLFLED---CYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLL 65
            ++R+ KK   GN   F+ L D    Y+  +            F  + EQ +       LL
Sbjct: 1010 SSRQEKKSAKGNRFAFVQLSDPTGLYECTV------------FSDVLEQAR------DLL 1051

Query: 66   REKKPYIIVVSQEDKLSLQRDSIRLLW--VESLEKKSME-MLDSLRVYLQDRSPLREIHK 122
                  ++ V      +L+ DS++LL   V  ++  + +    SLRV+L           
Sbjct: 1052 EPGGHVVLTVEA----TLEGDSLKLLARGVSPIDAVAADAGAMSLRVHL---DRAEAAAS 1104

Query: 123  YFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
                        +  + +      G  EI+I L   + +SP+I   L  + G+  V ++
Sbjct: 1105 VAALLARAQGRARAPVRICVRDPSGGQEIDIELGQDFAVSPQIRSALRAVPGVEMVEEI 1163


>gi|221369558|ref|YP_002520654.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides KD131]
 gi|221162610|gb|ACM03581.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides KD131]
          Length = 1163

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 33/179 (18%)

Query: 10   NNRKGKKKPDGNH-DFLFLED---CYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLL 65
            ++R+ KK   GN   F+ L D    Y+  +            F  + EQ +       LL
Sbjct: 1010 SSRQEKKSAKGNRFAFVQLSDPTGLYECTV------------FSDVLEQAR------DLL 1051

Query: 66   REKKPYIIVVSQEDKLSLQRDSIRLLW--VESLEKKSME-MLDSLRVYLQDRSPLREIHK 122
                  ++ V      +L+ DS++LL   V  ++  + +    SLRV+L           
Sbjct: 1052 EPGGHVVLTVEA----TLEGDSLKLLARGVSPIDAVAADAGAMSLRVHL---DRAEAAAS 1104

Query: 123  YFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
                        +  + +      G  EI+I L   + +SP+I   L  + G+  V ++
Sbjct: 1105 VAALLARAQGRARAPVRICVRDPSGGQEIDIELGQDFAVSPQIRSALRAVPGVEMVEEI 1163


>gi|146279950|ref|YP_001170108.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides ATCC 17025]
 gi|145558191|gb|ABP72803.1| hypothetical protein Rsph17025_3949 [Rhodobacter sphaeroides ATCC
            17025]
          Length = 1163

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 33/179 (18%)

Query: 10   NNRKGKKKPDGNH-DFLFLED---CYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLL 65
            ++R+ KK   GN   F+ L D    Y+  +            F  + EQ +       LL
Sbjct: 1010 SSRQEKKSAKGNRFAFVQLSDPTGLYECTV------------FSDVLEQAR------DLL 1051

Query: 66   REKKPYIIVVSQEDKLSLQRDSIRLLW--VESLEKKSME-MLDSLRVYLQDRSPLREIHK 122
                  ++ V      +L+ DS++LL   V  ++  + +    SLRV+L           
Sbjct: 1052 EPGGHVVLTVEA----TLEGDSLKLLARGVAPIDAVAADAGAMSLRVHL---DRAEAAAS 1104

Query: 123  YFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
                        +  + +      G  EI+I L   + +SP+I   L  + G+  V ++
Sbjct: 1105 VAALLARAQGRARAPVRICVRDPSGGQEIDIELGQDFAVSPQIRSALRAVPGVEMVEEI 1163


>gi|56695561|ref|YP_165911.1| DNA polymerase III subunit alpha [Ruegeria pomeroyi DSS-3]
 gi|56677298|gb|AAV93964.1| DNA polymerase III, alpha subunit [Ruegeria pomeroyi DSS-3]
          Length = 1187

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 5/122 (4%)

Query: 59   EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME-MLDSLRVYLQDRSPL 117
            E+    L      ++    E  +   +  +    V   +    E     LRV++ +   +
Sbjct: 1065 EKSREFLETGSHVVLT--AEATMEADQLKLLARSVGPADAVVAEAGATGLRVFMDNAGAV 1122

Query: 118  REIHKYFENRQTQNYDKQ-GKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGIT 175
              +            +   G + L  +      E+E+ L   +P++P+I   L+ + G+ 
Sbjct: 1123 ETVAHILAEAAQAARNAARGPVQLCLMDPGLPGEVEMDLGQEFPLNPQIKGALKSLDGVV 1182

Query: 176  KV 177
             V
Sbjct: 1183 DV 1184


>gi|167646770|ref|YP_001684433.1| DNA polymerase III subunit alpha [Caulobacter sp. K31]
 gi|167349200|gb|ABZ71935.1| DNA polymerase III, alpha subunit [Caulobacter sp. K31]
          Length = 1143

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 8/113 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQ-DRSPLREIHK 122
            +L   K   I V  + +             E +EK    M+  LR++L    + +  + +
Sbjct: 1031 VLEPGKAVAIKVRAKAR--DGEVRFFGDDAEPIEKAIENMVAGLRMHLSPSATEIDALRR 1088

Query: 123  YFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGI 174
              E   +      G++ LI     G  EIE+ L   Y +   +   L+   G+
Sbjct: 1089 RLEAAASPRG---GEVSLIAAL-GGGREIEMKLPGRYTLDAALRGALKTAPGV 1137


>gi|16126169|ref|NP_420733.1| DNA polymerase III subunit alpha [Caulobacter crescentus CB15]
 gi|221234940|ref|YP_002517376.1| DNA polymerase III subunit alpha [Caulobacter crescentus NA1000]
 gi|68565608|sp|Q9A700|DPO3A_CAUCR RecName: Full=DNA polymerase III subunit alpha
 gi|239977223|sp|B8GWS6|DPO3A_CAUCN RecName: Full=DNA polymerase III subunit alpha
 gi|13423381|gb|AAK23901.1| DNA polymerase III, alpha subunit [Caulobacter crescentus CB15]
 gi|220964112|gb|ACL95468.1| DNA polymerase III alpha subunit [Caulobacter crescentus NA1000]
          Length = 1143

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 8/113 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L   K   I V  + +             E +EK    ++  LRV+L   SP       
Sbjct: 1031 VLEPGKAVAIKVRAKAR--DGEVRFFGDDAEPIEKAVENVVAGLRVHL---SPSAAEIDA 1085

Query: 124  FENRQTQ-NYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGI 174
             + R       K G++  +     G  EIE+ L   Y +   +   L+   G+
Sbjct: 1086 LKRRLEPAQAQKGGEVTFVAAI-GGGREIELRLPGRYTLDAALRGALKTAPGV 1137


>gi|110681190|ref|YP_684197.1| DNA polymerase III subunit alpha [Roseobacter denitrificans OCh 114]
 gi|109457306|gb|ABG33511.1| DNA polymerase III, alpha subunit [Roseobacter denitrificans OCh 114]
          Length = 1183

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 57   LEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLD-SLRVYLQDRS 115
            LE  +   L      ++ V  E  +   +  +    V  ++  + ++    L+V++    
Sbjct: 1060 LEAARDY-LEAGSKVVVTV--EATMESDQLKLLGRSVGPIDAATADVSSMGLKVFVDAPE 1116

Query: 116  PLREIHKYFENR-QTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITG 173
             +  +    E   +      QG + L  + +    E+E+ L   + ++P+I   ++ ++G
Sbjct: 1117 AVAAVATVLEGAGRAVKGRAQGPVMLCLMGADLPGEVEVELGQDFIVNPQIKGAIKSLSG 1176

Query: 174  ITKVVQV 180
            + +V ++
Sbjct: 1177 VLEVEEI 1183


>gi|114770394|ref|ZP_01447932.1| DNA polymerase III subunit alpha [alpha proteobacterium HTCC2255]
 gi|114549231|gb|EAU52114.1| DNA polymerase III subunit alpha [alpha proteobacterium HTCC2255]
          Length = 1128

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 53/117 (45%), Gaps = 9/117 (7%)

Query: 68   KKPYIIVVSQEDKLSLQRDSIRLLWVESLE---KKSMEMLDSLRVYLQDRSPLREIHKYF 124
             K   + V  E  +   +  + +   + ++   + +  M   L++++ +   ++ I    
Sbjct: 1015 GKNVTLTV--EANVDADQLKLLVRSAQPVDVSVQDAAAM--GLKIFVSNEEAVKSIATRL 1070

Query: 125  -ENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQ 179
             E  +       G + L+    +   E+EI L + YP++P+I   ++H+ G+ +V++
Sbjct: 1071 SEISKDAPQRALGPVHLVLSHPELPGEVEIVLKNSYPLNPQIKGAIKHVDGVLEVME 1127


>gi|163795645|ref|ZP_02189611.1| DNA polymerase III, alpha subunit [alpha proteobacterium BAL199]
 gi|159179244|gb|EDP63777.1| DNA polymerase III, alpha subunit [alpha proteobacterium BAL199]
          Length = 1162

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL    P +  V  + ++      +    +E L+K   +    L ++++D   L      
Sbjct: 1053 LLDAGIPLL--VKADARIEDDAMRLLASRMEPLDKAVEQTAAGLEIHVRDTRALEP---- 1106

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGI 174
              +   Q    +G+I ++     G+ ++ I L + Y +S ++   ++ I GI
Sbjct: 1107 LRSLIAQEGRGRGRIRVVV--PTGEGDVGIVLPEAYKVSSQLRGAVKAIPGI 1156


>gi|312114721|ref|YP_004012317.1| DNA polymerase III subunit alpha [Rhodomicrobium vannielii ATCC
            17100]
 gi|311219850|gb|ADP71218.1| DNA polymerase III, alpha subunit [Rhodomicrobium vannielii ATCC
            17100]
          Length = 1151

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 49/114 (42%), Gaps = 9/114 (7%)

Query: 65   LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYF 124
            L   K  ++ V  E     +   +R+  V++L++   ++   + +   +R  + E+ K+ 
Sbjct: 1045 LEAGKNVLVHVEGEA--DGEAIKVRVQAVQALDEVLGKITKQVSITATERLQVAELVKHL 1102

Query: 125  ENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKV 177
                    +   ++ L+    + +  +E  L D++ I+      L+ + G+ +V
Sbjct: 1103 ------GREGGIQVNLVVQIPEAQKAVEFKLGDNFSITARQLATLKTLPGVLQV 1150


>gi|295689601|ref|YP_003593294.1| DNA polymerase III subunit alpha [Caulobacter segnis ATCC 21756]
 gi|295431504|gb|ADG10676.1| DNA polymerase III, alpha subunit [Caulobacter segnis ATCC 21756]
          Length = 1143

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 8/113 (7%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQ-DRSPLREIHK 122
            +L   K   I V  + +             E +EK    ++  LRV+L    + +  + +
Sbjct: 1031 VLEPGKAVAIKVRAKAR--DGEVRFFGDDAEPIEKAIENVVAGLRVHLSPSAAEIEALKR 1088

Query: 123  YFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGI 174
              E  Q+Q     G++  +   S G  EIE+ L   Y +   +   L+   G+
Sbjct: 1089 RLEPAQSQKG---GEVTFVAAISGG-REIELRLPGRYSLDASLRGALKTAPGV 1137


>gi|114765486|ref|ZP_01444596.1| DNA polymerase III subunit alpha [Pelagibaca bermudensis HTCC2601]
 gi|114542196|gb|EAU45227.1| DNA polymerase III subunit alpha [Roseovarius sp. HTCC2601]
          Length = 1174

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 59   EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDS-LRVYLQDRSPL 117
            E+   LL      ++ V  E  +   +  +       +E+   +   + +++Y+++   +
Sbjct: 1052 EKARDLLETGTKVVVTV--EATMESDQLKLLARSFGPVEQVVADAGAAGMKIYIENPDTV 1109

Query: 118  REIHKYFE-NRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGIT 175
             ++        +      +G + L F  S    E+E+ L   +P++PEI   ++ + G+ 
Sbjct: 1110 AQVASVLGRAAEQMPRAGRGPVRLCFAGSGLPGEVEMDLRQEFPVTPEIKGAVKSLDGVM 1169

Query: 176  KV 177
             V
Sbjct: 1170 AV 1171


>gi|310816591|ref|YP_003964555.1| DNA polymerase III subunit alpha [Ketogulonicigenium vulgare Y25]
 gi|308755326|gb|ADO43255.1| DNA polymerase III subunit alpha [Ketogulonicigenium vulgare Y25]
          Length = 1163

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 9/127 (7%)

Query: 57   LEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSP 116
            LE  +P LL      I+    E  L   +  +      ++ +    +    R+Y+     
Sbjct: 1043 LEAARP-LLEAGTQVIL--QAEATLEADQLKLLARSFSAVGEMDTGVE-GYRIYIDREEA 1098

Query: 117  LREIHKYFENRQTQNYDK-QGKIGL-IFLRSQGKIEIEITLDH-YPISPEIAFDLEHITG 173
            L ++    EN         +G I   I +   G  E++I     YP++P+I   L  + G
Sbjct: 1099 LAQVSSVLENAIAAKVRAPRGHIAFEIIVPDVG--EVKIEAPRTYPLNPQIRAALRAVNG 1156

Query: 174  ITKVVQV 180
            + +V++V
Sbjct: 1157 VQEVIEV 1163


>gi|58038565|ref|YP_190529.1| DNA polymerase III subunit alpha [Gluconobacter oxydans 621H]
 gi|58000979|gb|AAW59873.1| DNA polymerase III alpha subunit [Gluconobacter oxydans 621H]
          Length = 1140

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 8/118 (6%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   +   I+V+ E K+      I    V  LE  +      +RV+L++ + L ++   
Sbjct: 1030 LLVAGQA--ILVTAELKVDGDALRITAQNVMDLEVAAAAERSEIRVWLKEDASLPDLASL 1087

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180
             E  Q       G++ L+    + + ++EI++  HY ++P +A  L  + G+ K +QV
Sbjct: 1088 LEEVQG----GLGRVKLLPSVEETQ-DVEISIPGHYRVTPRLAERLRTLRGVEKALQV 1140


>gi|329115626|ref|ZP_08244348.1| DNA polymerase III subunit alpha [Acetobacter pomorum DM001]
 gi|326695054|gb|EGE46773.1| DNA polymerase III subunit alpha [Acetobacter pomorum DM001]
          Length = 1139

 Score = 48.1 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 48/109 (44%), Gaps = 6/109 (5%)

Query: 73   IVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNY 132
            I+V+ + KL  +   +    +  LE  + +    +RV+L+    L       +       
Sbjct: 1036 ILVTADLKLEGEALRLTATDIVDLEAAAAQGQSEMRVWLEKPDAL----PDLQAILEPQK 1091

Query: 133  DKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180
               G++ L+   +    ++E+ L   Y ++P +   L  ++G+++V QV
Sbjct: 1092 GGAGRVVLLPGVADSC-DVEVRLRGRYKVTPVLGQRLRTLSGVSRVEQV 1139


>gi|294676350|ref|YP_003576965.1| DNA polymerase III subunit alpha [Rhodobacter capsulatus SB 1003]
 gi|294475170|gb|ADE84558.1| DNA polymerase III, alpha subunit [Rhodobacter capsulatus SB 1003]
          Length = 1169

 Score = 47.7 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 65   LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEML--DSLRVYLQDRSPLREIHK 122
            L   +  ++ V  +  +  +   +       ++  + +      L ++L+    +  +  
Sbjct: 1052 LEPGQAVVLTVKVD--VEGETVKMLCQTAAPIDTVASDAGAGSGLLIHLETPEAVSSVAA 1109

Query: 123  YFEN-RQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
             FE          +G++       + +   +IT     P++P++   L  + G+ +V +V
Sbjct: 1110 LFERIAAEGRVKSRGQVTFSVFDPEKRRRYQITAGRELPVNPQVKGALRSLRGVVQVEEV 1169


>gi|163732864|ref|ZP_02140309.1| DNA polymerase III, alpha subunit [Roseobacter litoralis Och 149]
 gi|161394224|gb|EDQ18548.1| DNA polymerase III, alpha subunit [Roseobacter litoralis Och 149]
          Length = 1138

 Score = 47.7 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 50/119 (42%), Gaps = 5/119 (4%)

Query: 65   LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKY 123
            L       I V+ E  +   +  +    V  ++  + ++    L+V++     +  +   
Sbjct: 1022 LEAGSK--IFVTVEATMESDQLKLLGRSVGPIDAATADVSSMGLKVFVDAPEAVAAVATV 1079

Query: 124  FENR-QTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
             E   +      QG + L  + +    E+E+ L   + ++P+I   ++ ++G+ +V ++
Sbjct: 1080 LEGAGRAVKGRAQGPVMLCLMGADLPGEVEVELGQDFIVNPQIKGAIKSLSGVLEVEEI 1138


>gi|89070902|ref|ZP_01158137.1| DNA polymerase III subunit alpha [Oceanicola granulosus HTCC2516]
 gi|89043541|gb|EAR49752.1| DNA polymerase III subunit alpha [Oceanicola granulosus HTCC2516]
          Length = 1166

 Score = 47.7 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 5/119 (4%)

Query: 65   LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLE-KKSMEMLDSLRVYLQDRSPLREIHKY 123
            L      ++ V  E  +   +  +    V  ++   +      L+V+++    +  +   
Sbjct: 1050 LESGSQVVLSV--EATMEADQLKLLARSVSPIDVAVADAGSSGLKVFVEHADAINAVASV 1107

Query: 124  FENRQTQNYDKQGKIGLIFLRS-QGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
             E              L  L       E+E+ L   +P++P+I   L  + GI +V +V
Sbjct: 1108 LEGAGRDGARGGRGPILFCLMDPDLPGEVELDLGAEFPVNPQIKGALRSLPGILEVQEV 1166


>gi|258543019|ref|YP_003188452.1| DNA polymerase III subunit alpha [Acetobacter pasteurianus IFO
            3283-01]
 gi|256634097|dbj|BAI00073.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-01]
 gi|256637157|dbj|BAI03126.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-03]
 gi|256640209|dbj|BAI06171.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-07]
 gi|256643266|dbj|BAI09221.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-22]
 gi|256646321|dbj|BAI12269.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-26]
 gi|256649374|dbj|BAI15315.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-32]
 gi|256652360|dbj|BAI18294.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-01-42C]
 gi|256655418|dbj|BAI21345.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-12]
          Length = 1139

 Score = 47.7 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 6/109 (5%)

Query: 73   IVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNY 132
            I+V+ + KL  +   +    +  LE  + +    +RV+L+    L       +       
Sbjct: 1036 ILVTADLKLEGEALRLTATDIVDLEAAAAQGQSEMRVWLEKPDAL----PDLQAILEPQK 1091

Query: 133  DKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180
               G+I L+   +    ++E+ L   Y ++P +   L  ++G+++V QV
Sbjct: 1092 GGAGRIVLLPGVADSC-DVEVRLRGRYKVTPVLGQRLRTLSGVSRVEQV 1139


>gi|114327944|ref|YP_745101.1| DNA polymerase III subunit alpha [Granulibacter bethesdensis CGDNIH1]
 gi|114316118|gb|ABI62178.1| DNA polymerase III alpha subunit [Granulibacter bethesdensis CGDNIH1]
          Length = 1143

 Score = 47.7 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 6/110 (5%)

Query: 73   IVVSQEDKLSLQR-DSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
            ++V+ + K   +    I    +  L+  +      +RV+L+D + + +I          +
Sbjct: 1038 VLVTADIKAEGEDSIRITAQDIMPLDDAAGGTAGMMRVWLKDNADIGQIRAVL---SRPD 1094

Query: 132  YDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180
               +G + LI  R     E+EI L   + ++P +   L+ I G+ +V +V
Sbjct: 1095 TKGKGHVVLIP-RLNEDQEMEIELPGGFNVTPRLGQALKLIPGVERVEEV 1143


>gi|254512245|ref|ZP_05124312.1| putative DNA polymerase III alpha subunit subfamily [Rhodobacteraceae
            bacterium KLH11]
 gi|221535956|gb|EEE38944.1| putative DNA polymerase III alpha subunit subfamily [Rhodobacteraceae
            bacterium KLH11]
          Length = 1166

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 51/125 (40%), Gaps = 5/125 (4%)

Query: 59   EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME-MLDSLRVYLQDRSPL 117
            E+    L      ++    E  +   +  +    V  ++    E     LRV+++D + L
Sbjct: 1044 EKSREFLETGAQVVLT--AEATMEADQLKLLGRSVGPVDAVVAEAGATGLRVFVEDAAVL 1101

Query: 118  REIHKYFENRQTQ-NYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGIT 175
              +    E  +T      +G + +         E+E+ L   Y I+P+I   L+ + GI+
Sbjct: 1102 PTMATVLEEAETSVKRAAKGPVYVCLFDPGLPGEVEMDLGRNYAINPQIKGALKSLEGIS 1161

Query: 176  KVVQV 180
            ++ ++
Sbjct: 1162 EIEEI 1166


>gi|294084089|ref|YP_003550847.1| DNA polymerase III subunit alpha [Candidatus Puniceispirillum marinum
            IMCC1322]
 gi|292663662|gb|ADE38763.1| DNA polymerase III, alpha subunit [Candidatus Puniceispirillum
            marinum IMCC1322]
          Length = 1153

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 46/114 (40%), Gaps = 7/114 (6%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL + KP +  VS   K+      +    V+ L+         + ++++D  PL      
Sbjct: 1044 LLNDDKPLL--VSANLKVEENGPRLLAARVQLLDDAVAAWHGGVGLWIRDDKPLE----Q 1097

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177
             ++    +   + ++ L F      + + +    + +S E+  +L  I G+ +V
Sbjct: 1098 LKSALRDDGPGKAEVKLHFTVDGHDVRVALA-GRFKLSGELRQNLRRIPGVLEV 1150


>gi|148261382|ref|YP_001235509.1| DNA polymerase III subunit alpha [Acidiphilium cryptum JF-5]
 gi|146403063|gb|ABQ31590.1| DNA polymerase III, alpha subunit [Acidiphilium cryptum JF-5]
          Length = 1139

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 8/118 (6%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL E    +++V+ + +L  +   +  + VE L+K +      LR+ ++ R  L  I   
Sbjct: 1029 LLAEG--AMLLVTADLRLDGESLRVTAVDVEPLDKAAANAGAGLRITVEGREALGSIRAL 1086

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180
             E    +    +G++ L      G   ++I L   + +SP +A  ++ I G+ +V ++
Sbjct: 1087 LE----REGRGKGRVLLAPRIDTGAR-LDIALPGGFNVSPRLAQAMKMIRGVAEVAEL 1139


>gi|126733665|ref|ZP_01749412.1| DNA polymerase III subunit alpha [Roseobacter sp. CCS2]
 gi|126716531|gb|EBA13395.1| DNA polymerase III subunit alpha [Roseobacter sp. CCS2]
          Length = 1165

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 57   LEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDS-LRVYLQDRS 115
            LE  +   L      ++    E  +   +  +    V  ++    +   + LRV++    
Sbjct: 1042 LEASREY-LETGSQVVL--QCEATMEADQLKLLGRSVSPVDAVVADAGGAGLRVFIDGPE 1098

Query: 116  PLREIHKYFENRQTQNYD-KQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITG 173
             +  +     N         +G +    +      E+E+ L + +P++P+I   +  + G
Sbjct: 1099 VIGSVQSVLANATGGAVRAGRGPVYFCLMHDDLPGEVELDLGEEFPVNPQIKGAIRSLGG 1158

Query: 174  ITKV 177
            + +V
Sbjct: 1159 VIEV 1162


>gi|197105245|ref|YP_002130622.1| DNA polymerase III, alpha subunit [Phenylobacterium zucineum HLK1]
 gi|196478665|gb|ACG78193.1| DNA polymerase III, alpha subunit [Phenylobacterium zucineum HLK1]
          Length = 1148

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 6/113 (5%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL   +  ++ V    K S          VE +EK    ++  LRV++   +P     + 
Sbjct: 1036 LLEPGRAVVLKVRA--KASEGEVRFFGDDVEPVEKAIENVVAGLRVHV---APRSAEIEA 1090

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGIT 175
             + R     + +G   ++     G  E+E+ L   + +   +   L+   G+ 
Sbjct: 1091 LKRRLEGVTNTRGGEVILVAGLDGGREVELKLPGRFTLDGAVRGALKTAPGVV 1143


>gi|302383614|ref|YP_003819437.1| DNA polymerase III subunit alpha [Brevundimonas subvibrioides ATCC
            15264]
 gi|302194242|gb|ADL01814.1| DNA polymerase III, alpha subunit [Brevundimonas subvibrioides ATCC
            15264]
          Length = 1162

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 5/113 (4%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL      ++ V    K S             L+    +    LRV++  R+      + 
Sbjct: 1049 LLEVGSALMVRVRA--KSSDGEVRFFGDDCSRLDALVDDSTVGLRVHVSARTTDPAAIQA 1106

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGIT 175
               R        G+I LI     G+ E+E+ L   Y +   +   L+   G+ 
Sbjct: 1107 RLARALAQGKG-GEITLIASLD-GRREVEMRLPGRYRLDGALRGALKSAPGVL 1157


>gi|126728427|ref|ZP_01744243.1| DNA polymerase III subunit alpha [Sagittula stellata E-37]
 gi|126711392|gb|EBA10442.1| DNA polymerase III subunit alpha [Sagittula stellata E-37]
          Length = 1166

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 50/126 (39%), Gaps = 6/126 (4%)

Query: 55   QQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDS-LRVYLQD 113
            + LE+ +   L      ++ V  E  +   +  +    V  ++  + +   S +R+++  
Sbjct: 1041 ETLEKSREH-LETGSKVVVTV--EATMESDQLKLLGRAVMPVDAAAAQGGPSGMRIFVDT 1097

Query: 114  RSPLREIHKYFENRQTQNYDK-QGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHI 171
               L +I         Q     +  I L         E+E+ L + +P++PEI   ++ +
Sbjct: 1098 EMALSQIASVLGRAAEQLPKAPRAPIVLRLAAPGLPGEVEMDLSERFPVTPEIKGAVKSL 1157

Query: 172  TGITKV 177
             G+  V
Sbjct: 1158 DGVLAV 1163


>gi|159045497|ref|YP_001534291.1| DNA polymerase III subunit alpha [Dinoroseobacter shibae DFL 12]
 gi|157913257|gb|ABV94690.1| DNA polymerase III subunit alpha [Dinoroseobacter shibae DFL 12]
          Length = 1164

 Score = 45.8 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 8/124 (6%)

Query: 60   EKPRL-LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDS---LRVYLQDRS 115
            EK R  L   K  ++ V  E  L   +  +       ++    +   +   LRV+++  +
Sbjct: 1040 EKVRDHLETGKNVVMQV--EATLEADQLKLLCRSAAPIDDAVADARGAMMGLRVFVEAEA 1097

Query: 116  PLREIHKYFENRQT-QNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITG 173
             L  I           +   +G + L  +      E+++ L +  P++P+I   L+ + G
Sbjct: 1098 ALPNIAGLLGRMAEDPSIRTRGPVTLALIDPDLPGEVDVLLGEALPVNPQIKGALKSLAG 1157

Query: 174  ITKV 177
            +  V
Sbjct: 1158 VALV 1161


>gi|84514324|ref|ZP_01001688.1| DNA polymerase III subunit alpha [Loktanella vestfoldensis SKA53]
 gi|84511375|gb|EAQ07828.1| DNA polymerase III subunit alpha [Loktanella vestfoldensis SKA53]
          Length = 1188

 Score = 45.8 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 5/116 (4%)

Query: 65   LREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDS-LRVYLQDRSPLREIHKY 123
            L      ++    E  +   +  +    V  ++    +   + LRV++   S +  I   
Sbjct: 1072 LETGSQIVL--QCEATMEGDQLKLLGRSVSPIDSVVADAGSAGLRVFIDSPSAIDTIASI 1129

Query: 124  FENRQTQNYDK-QGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
              +         +G + +    +    E+E+ L   +P++P+I   L  + G+ +V
Sbjct: 1130 LASAARDGVRAARGPVYICLTNADLPGEVELDLGEPFPVNPQIKGALRSLGGVIEV 1185


>gi|326404871|ref|YP_004284953.1| DNA polymerase III alpha subunit [Acidiphilium multivorum AIU301]
 gi|325051733|dbj|BAJ82071.1| DNA polymerase III alpha subunit [Acidiphilium multivorum AIU301]
          Length = 1139

 Score = 45.4 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 56/118 (47%), Gaps = 8/118 (6%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            LL E    +++V+ + +L  +   +  + VE L+K +      LR+ ++ R  L  I   
Sbjct: 1029 LLAEG--AMLLVTADLRLDGESLRVTAVDVEPLDKAAANAGAGLRITVEGREALGSIRAL 1086

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180
             E    +    +G++ L+  R      ++I L   + +SP +A  ++ I G+ +V ++
Sbjct: 1087 LE----REGRGKGRV-LLAPRIDTAARLDIALPGGFNVSPRLAQAMKMIRGVAEVAEL 1139


>gi|330994074|ref|ZP_08318004.1| DNA polymerase III subunit alpha [Gluconacetobacter sp. SXCC-1]
 gi|329759020|gb|EGG75534.1| DNA polymerase III subunit alpha [Gluconacetobacter sp. SXCC-1]
          Length = 1144

 Score = 45.4 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
            +L      +  V+ + KL  +   I    V  LE+ + E    +R++      L  I   
Sbjct: 1034 ILVAGNAVV--VTADLKLEGEALRITASDVMELEQAAAEAAAEMRIWFDRADALEPIRDV 1091

Query: 124  FENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQ 179
             +     +   +G++ ++        ++E+TL + Y ++P +A  ++ I G+ +V Q
Sbjct: 1092 LQG----HGMGRGRV-ILLPSVAETRDVELTLGERYRVTPRVAQMIKAIEGVDRVEQ 1143


>gi|254419705|ref|ZP_05033429.1| DNA polymerase III, alpha subunit subfamily, putative [Brevundimonas
            sp. BAL3]
 gi|196185882|gb|EDX80858.1| DNA polymerase III, alpha subunit subfamily, putative [Brevundimonas
            sp. BAL3]
          Length = 1153

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 8/135 (5%)

Query: 45   DPN--FLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME 102
            DP   F  L   +QL + +  +L      ++ V    K S             ++    +
Sbjct: 1018 DPTGEFECLFPPEQLRKCR-EVLEPGASVMVRVRA--KASEGEVRFFGDDASQMDNLLDD 1074

Query: 103  MLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQG-KIGLIFLRSQGKIEIEITL-DHYPI 160
                LR+++  R+   E  K    R       +G +I L+    +G+ E+E+ L   Y +
Sbjct: 1075 ANIGLRIHVSARTADAEALKARLERARSGAIGKGGEISLVA-SLEGRQEVEVKLPGRYRL 1133

Query: 161  SPEIAFDLEHITGIT 175
               +   L+   G+ 
Sbjct: 1134 DGALRGALKSAPGVL 1148


>gi|114800101|ref|YP_760471.1| DNA polymerase III subunit alpha [Hyphomonas neptunium ATCC 15444]
 gi|114740275|gb|ABI78400.1| DNA polymerase III, alpha subunit [Hyphomonas neptunium ATCC 15444]
          Length = 1140

 Score = 43.5 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 15/123 (12%)

Query: 64   LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLD---SLRVYL---QDRSPL 117
            LL+  K   I V+      L  + +RL    ++E ++  +     SL V L    D   L
Sbjct: 1022 LLQPGKAVAITVTA----KLNGEELRLNLDRAVELEAARLSKPSGSLMVRLGPDADPEDL 1077

Query: 118  REIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITK 176
              + +    R  Q  D    + ++ L  +    + + L   Y I       L+ + G+ K
Sbjct: 1078 AGVIR----RLEQVSDGDRGVIIVELILRDGRIVTMRLPQTYTIGLRAQRALKEVPGVEK 1133

Query: 177  VVQ 179
            V  
Sbjct: 1134 VDP 1136


>gi|242771604|ref|XP_002477876.1| monocarboxylate permease, putative [Talaromyces stipitatus ATCC
            10500]
 gi|218721495|gb|EED20913.1| monocarboxylate permease, putative [Talaromyces stipitatus ATCC
            10500]
          Length = 1396

 Score = 42.0 bits (97), Expect = 0.040,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 36   EMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVES 95
            +++ Q  +E     S  ++QQ++ EK RL  EK   +   +Q  + + + ++     +++
Sbjct: 1008 QLERQRKQEKARQTSFIQEQQIKFEK-RLEEEKDKLVKANAQHFERAKKENATLKENIDT 1066

Query: 96   LEKKSMEMLDSLRVYLQDRSPLREIHKYFENR 127
            L ++  ++  +L++Y+Q+ + L       ++R
Sbjct: 1067 LREEKAQIEKTLKLYVQNSNDLESQMDELKSR 1098


>gi|167587214|ref|ZP_02379602.1| amino acid adenylation domain [Burkholderia ubonensis Bu]
          Length = 615

 Score = 41.2 bits (95), Expect = 0.057,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172
             P     + +           G +  +     G+I+ ++ L    I P EI   L    
Sbjct: 385 PDPFVPGARMYRTGDLARRRADGALDYL-----GRIDTQVKLRGQRIEPGEIEALLRAAP 439

Query: 173 GITKVVQVIHNE 184
           G+   V V+ +E
Sbjct: 440 GVHDAVVVVRDE 451


>gi|206560058|ref|YP_002230822.1| ornibactin biosynthesis non-ribosomal peptide synthase [Burkholderia
            cenocepacia J2315]
 gi|198036099|emb|CAR51994.1| ornibactin biosynthesis non-ribosomal peptide synthase [Burkholderia
            cenocepacia J2315]
          Length = 3222

 Score = 40.8 bits (94), Expect = 0.080,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 114  RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172
              P     + +           G +  +     G+++ ++ L    I P EI   L    
Sbjct: 2992 PDPFVPGARMYRTGDLARRRADGALDYL-----GRVDTQVKLRGQRIEPGEIEALLRAAP 3046

Query: 173  GITKVVQVIHNE 184
            G+   V ++ +E
Sbjct: 3047 GVNDAVVIVRDE 3058


>gi|170732963|ref|YP_001764910.1| amino acid adenylation domain-containing protein [Burkholderia
            cenocepacia MC0-3]
 gi|169816205|gb|ACA90788.1| amino acid adenylation domain protein [Burkholderia cenocepacia
            MC0-3]
          Length = 3221

 Score = 40.8 bits (94), Expect = 0.080,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 114  RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172
              P     + +           G +  +     G+++ ++ L    I P EI   L    
Sbjct: 2991 PDPFVPGARMYRTGDLARRRADGALDYL-----GRVDTQVKLRGQRIEPGEIEALLRAAP 3045

Query: 173  GITKVVQVIHNE 184
            G+   V ++ +E
Sbjct: 3046 GVNDAVVIVRDE 3057


>gi|107022713|ref|YP_621040.1| amino acid adenylation [Burkholderia cenocepacia AU 1054]
 gi|116689662|ref|YP_835285.1| amino acid adenylation domain-containing protein [Burkholderia
            cenocepacia HI2424]
 gi|105892902|gb|ABF76067.1| Amino acid adenylation [Burkholderia cenocepacia AU 1054]
 gi|116647751|gb|ABK08392.1| amino acid adenylation domain protein [Burkholderia cenocepacia
            HI2424]
          Length = 3231

 Score = 40.8 bits (94), Expect = 0.080,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 114  RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172
              P     + +           G +  +     G+++ ++ L    I P EI   L    
Sbjct: 3001 PDPFVPGARMYRTGDLARRRADGALDYL-----GRVDTQVKLRGQRIEPGEIEALLRAAP 3055

Query: 173  GITKVVQVIHNE 184
            G+   V ++ +E
Sbjct: 3056 GVNDAVVIVRDE 3067


>gi|78066256|ref|YP_369025.1| non-ribosomal peptide synthase [Burkholderia sp. 383]
 gi|77967001|gb|ABB08381.1| Non-ribosomal peptide synthase [Burkholderia sp. 383]
          Length = 3219

 Score = 40.8 bits (94), Expect = 0.080,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 114  RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172
              P     + +           G +  +     G+++ ++ L    I P EI   L    
Sbjct: 2989 PDPFVPGARMYRTGDLARRRADGALDYL-----GRVDTQVKLRGQRIEPGEIEALLRAAP 3043

Query: 173  GITKVVQVIHNE 184
            G+   V ++ +E
Sbjct: 3044 GVNDAVVIVRDE 3055


>gi|162148792|ref|YP_001603253.1| DNA polymerase III subunit alpha [Gluconacetobacter diazotrophicus
            PAl 5]
 gi|161787369|emb|CAP56964.1| putative DNA polymerase III subunit alpha [Gluconacetobacter
            diazotrophicus PAl 5]
          Length = 1142

 Score = 40.8 bits (94), Expect = 0.095,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 49/108 (45%), Gaps = 6/108 (5%)

Query: 73   IVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNY 132
            ++V+ + +L  +   I    V +LE+ + +    LR++      +  IH      +    
Sbjct: 1039 VLVTADLRLDGEALRITGSDVVALEQAAADAAAELRIWFDREDAITPIHAILSEEKG--- 1095

Query: 133  DKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQ 179
              +GK+ ++        ++E+ L   Y ++P +A  ++ + G+ +V Q
Sbjct: 1096 -GRGKV-ILLPSVAETRDVEVRLGGAYRVTPRMAQMIKAVAGVARVEQ 1141


>gi|209545459|ref|YP_002277688.1| DNA polymerase III subunit alpha [Gluconacetobacter diazotrophicus
            PAl 5]
 gi|209533136|gb|ACI53073.1| DNA polymerase III, alpha subunit [Gluconacetobacter diazotrophicus
            PAl 5]
          Length = 1142

 Score = 40.4 bits (93), Expect = 0.096,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 49/108 (45%), Gaps = 6/108 (5%)

Query: 73   IVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNY 132
            ++V+ + +L  +   I    V +LE+ + +    LR++      +  IH      +    
Sbjct: 1039 VLVTADLRLDGEALRITGSDVVALEQAAADAAAELRIWFDREDAITPIHAILSEEKG--- 1095

Query: 133  DKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQ 179
              +GK+ ++        ++E+ L   Y ++P +A  ++ + G+ +V Q
Sbjct: 1096 -GRGKV-ILLPSVAETRDVEVRLGGAYRVTPRMAQMIKAVAGVARVEQ 1141


>gi|296283776|ref|ZP_06861774.1| DNA polymerase III, alpha subunit [Citromicrobium bathyomarinum
            JL354]
          Length = 1155

 Score = 40.4 bits (93), Expect = 0.098,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 44/116 (37%), Gaps = 6/116 (5%)

Query: 66   REKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFE 125
            +E    ++ V  +     +   + +     L + +      L + +   + L E+    +
Sbjct: 1034 QESTCVLLTVELDSPSPDEPPRVTIRGARPLAEVAGGQRMLLTLEVSSEAALGELALSLQ 1093

Query: 126  NRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
                      G++ +     QG+  + + L H Y +  ++A  LE I GI+ +  V
Sbjct: 1094 ----PGPPGHGEVQIALDLGQGERPV-MRLGHDYKVDGKLADALERIEGISNITLV 1144


>gi|221197924|ref|ZP_03570970.1| linear gramicidin synthetase subunit D [Burkholderia multivorans
            CGD2M]
 gi|221204518|ref|ZP_03577535.1| amino acid adenylation domain protein [Burkholderia multivorans CGD2]
 gi|221175375|gb|EEE07805.1| amino acid adenylation domain protein [Burkholderia multivorans CGD2]
 gi|221181856|gb|EEE14257.1| linear gramicidin synthetase subunit D [Burkholderia multivorans
            CGD2M]
          Length = 3221

 Score = 40.0 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 114  RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172
              P     + +           G +  +     G+++ ++ L    I P EI   L    
Sbjct: 2991 PDPFAPGERMYRTGDLARRRADGALDYL-----GRVDTQVKLRGQRIEPGEIEALLRAAP 3045

Query: 173  GITKVVQVIHNE 184
            G+   V ++ +E
Sbjct: 3046 GVHDAVVIVRDE 3057


>gi|221212942|ref|ZP_03585918.1| linear gramicidin synthetase subunit D [Burkholderia multivorans
            CGD1]
 gi|221167155|gb|EED99625.1| linear gramicidin synthetase subunit D [Burkholderia multivorans
            CGD1]
          Length = 3221

 Score = 40.0 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 114  RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172
              P     + +           G +  +     G+++ ++ L    I P EI   L    
Sbjct: 2991 PDPFAPGERMYRTGDLARRRADGALDYL-----GRVDTQVKLRGQRIEPGEIEALLRAAP 3045

Query: 173  GITKVVQVIHNE 184
            G+   V ++ +E
Sbjct: 3046 GVHDAVVIVRDE 3057


>gi|154244959|ref|YP_001415917.1| amino acid adenylation domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154159044|gb|ABS66260.1| amino acid adenylation domain [Xanthobacter autotrophicus Py2]
          Length = 2706

 Score = 39.7 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 12/71 (16%)

Query: 113 DRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHI 171
           D  P+      +           G   L+FL   G+ + ++ L  Y I P EIA  L+ +
Sbjct: 859 DNGPV------YRTGDLVRRRADG--SLVFL---GRADAQVKLRGYRIEPGEIAAALKAV 907

Query: 172 TGITKVVQVIH 182
            G+     V+H
Sbjct: 908 EGVRDAAVVLH 918


>gi|187918795|ref|YP_001887826.1| amino acid adenylation domain-containing protein [Burkholderia
            phytofirmans PsJN]
 gi|187717233|gb|ACD18456.1| amino acid adenylation domain protein [Burkholderia phytofirmans
            PsJN]
          Length = 3230

 Score = 39.7 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 114  RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172
              P     + +           G +  +     G+++ ++ L    I P EI   L    
Sbjct: 2994 PDPFSRGARLYRTGDLARRRADGALDYL-----GRMDTQVKLRGQRIEPGEIEALLRATP 3048

Query: 173  GITKVVQVIHNE 184
            G+   V ++ +E
Sbjct: 3049 GVHDAVVIVRDE 3060


>gi|186472866|ref|YP_001860208.1| amino acid adenylation domain-containing protein [Burkholderia
            phymatum STM815]
 gi|184195198|gb|ACC73162.1| amino acid adenylation domain protein [Burkholderia phymatum STM815]
          Length = 3224

 Score = 39.7 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 114  RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172
              P +   + +           G +  +     G+ + ++ L    I P EI   L    
Sbjct: 2988 PDPFKPGARLYRTGDLVCRRADGVLDYL-----GRADQQVKLRGLRIEPGEIEAVLRAAP 3042

Query: 173  GITKVVQVIHNE 184
            G+   V ++ ++
Sbjct: 3043 GVHDAVVIVRDD 3054


>gi|170703885|ref|ZP_02894569.1| amino acid adenylation domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170131207|gb|EDS99850.1| amino acid adenylation domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 821

 Score = 39.3 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172
             P     + +           G +  +     G+++ ++ L    I P EI   L    
Sbjct: 591 PDPFVPGARMYRTGDLARRRADGALDYL-----GRVDTQVKLRGQRIEPGEIEALLRTAP 645

Query: 173 GITKVVQVIHNE 184
           G+   V ++ +E
Sbjct: 646 GVHDAVVIVRDE 657


>gi|15487658|gb|AAD00894.3| CHIP6 [Glomerella cingulata]
          Length = 914

 Score = 39.3 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 44/139 (31%), Gaps = 23/139 (16%)

Query: 58  EEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLD-SLRVYLQ---- 112
           E E P+ +      +   +QE++     +       +  +    +  D +L+  ++    
Sbjct: 628 EREAPQDIEPTPDLLQGQAQEEREKSVGEGTDTTSDQQTDNTGTQTQDGNLKCVVRENTL 687

Query: 113 DRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKI----------------EIEITLD 156
             S +  I     ++  QN D   +I ++    +G+                 E+     
Sbjct: 688 SPSQMNMIALKMASKSLQNADPHAEIAMLEKTPEGRRKSSVVRYQKRQRGRAKEVARATG 747

Query: 157 HYPISPEIAFDLEHITGIT 175
            Y +  EIA       G  
Sbjct: 748 RYGL--EIAKAGLQAPGAV 764


>gi|161524771|ref|YP_001579783.1| amino acid adenylation domain-containing protein [Burkholderia
            multivorans ATCC 17616]
 gi|189350474|ref|YP_001946102.1| D-alanine-poly(phosphoribitol) ligase [Burkholderia multivorans ATCC
            17616]
 gi|160342200|gb|ABX15286.1| amino acid adenylation domain protein [Burkholderia multivorans ATCC
            17616]
 gi|189334496|dbj|BAG43566.1| D-alanine-poly(phosphoribitol) ligase [Burkholderia multivorans ATCC
            17616]
          Length = 3219

 Score = 39.3 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 114  RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172
              P     + +           G +  +     G+++ ++ L    I P EI   L    
Sbjct: 2989 PDPFVPGERMYRTGDLARRRADGALDYL-----GRVDTQVKLRGQRIEPGEIEALLRAAP 3043

Query: 173  GITKVVQVIHNE 184
            G+   V V+ +E
Sbjct: 3044 GVHDAVVVVRDE 3055


>gi|325524262|gb|EGD02383.1| non-ribosomal peptide synthase [Burkholderia sp. TJI49]
          Length = 465

 Score = 39.3 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172
             P     + +           G +  +     G+++ ++ L    I P EI   L    
Sbjct: 384 PDPFVPGARMYRTGDLARRRADGALDYL-----GRVDTQVKLRGQRIEPGEIEVLLRAAP 438

Query: 173 GITKVVQVIHNE 184
           G+   V ++ +E
Sbjct: 439 GVHDAVVIVRDE 450


>gi|172060609|ref|YP_001808261.1| amino acid adenylation domain-containing protein [Burkholderia
            ambifaria MC40-6]
 gi|171993126|gb|ACB64045.1| amino acid adenylation domain protein [Burkholderia ambifaria MC40-6]
          Length = 3227

 Score = 38.5 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 114  RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172
              P     + +           G +  +     G+++ ++ L    I P EI   L    
Sbjct: 2997 PDPFVPGARMYRTGDLARRRADGALDYL-----GRVDTQVKLRGQRIEPGEIEALLRMAP 3051

Query: 173  GITKVVQVIHNE 184
            G+   V ++ +E
Sbjct: 3052 GVHDAVVIVRDE 3063


>gi|171322179|ref|ZP_02911033.1| amino acid adenylation domain protein [Burkholderia ambifaria MEX-5]
 gi|171092505|gb|EDT37835.1| amino acid adenylation domain protein [Burkholderia ambifaria MEX-5]
          Length = 1683

 Score = 38.5 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 114  RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172
              P     + +           G +  +     G+++ ++ L    I P EI   L    
Sbjct: 1453 PDPFVPGARMYRTGDLARRRADGALDYL-----GRVDTQVKLRGQRIEPGEIEALLRMAP 1507

Query: 173  GITKVVQVIHNE 184
            G+   V ++ +E
Sbjct: 1508 GVHDAVVIVRDE 1519


>gi|115351590|ref|YP_773429.1| amino acid adenylation domain-containing protein [Burkholderia
            ambifaria AMMD]
 gi|115281578|gb|ABI87095.1| amino acid adenylation domain protein [Burkholderia ambifaria AMMD]
          Length = 3227

 Score = 38.5 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 114  RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172
              P     + +           G +  +     G+++ ++ L    I P EI   L    
Sbjct: 2997 PDPFVPGARMYRTGDLARRRADGALDYL-----GRVDTQVKLRGQRIEPGEIEALLRMAP 3051

Query: 173  GITKVVQVIHNE 184
            G+   V ++ +E
Sbjct: 3052 GVHDAVVIVRDE 3063


>gi|108763578|ref|YP_632180.1| non-ribosomal peptide synthetase [Myxococcus xanthus DK 1622]
 gi|108467458|gb|ABF92643.1| non-ribosomal peptide synthetase [Myxococcus xanthus DK 1622]
          Length = 4528

 Score = 38.5 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 6/76 (7%)

Query: 110  YLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDL 168
            Y+ D   +    + +       +   G++  I     G+ + ++ +  + + P E+A  L
Sbjct: 2971 YVPDPFSMEAGARMYRTGDKVRWLGDGRLEFI-----GRTDFQVKVRGFRVEPGEVAAVL 3025

Query: 169  EHITGITKVVQVIHNE 184
                 +   V V   E
Sbjct: 3026 RAHPDVQDAVVVAREE 3041


>gi|134295692|ref|YP_001119427.1| amino acid adenylation domain-containing protein [Burkholderia
            vietnamiensis G4]
 gi|134138849|gb|ABO54592.1| amino acid adenylation domain protein [Burkholderia vietnamiensis G4]
          Length = 3242

 Score = 38.5 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 114  RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172
              P     + +           G +  +     G+++ ++ L    I P EI   L    
Sbjct: 3012 PDPFVPGARMYRTGDLARRRPDGALDYL-----GRVDTQVKLRGQRIEPGEIEVLLRAAP 3066

Query: 173  GITKVVQVIHNE 184
            G+   V ++ +E
Sbjct: 3067 GVHDAVVIVRDE 3078


>gi|94309458|ref|YP_582668.1| acriflavin resistance protein [Cupriavidus metallidurans CH34]
 gi|93353310|gb|ABF07399.1| multidrug efflux system, subunit B [Cupriavidus metallidurans CH34]
          Length = 1051

 Score = 38.5 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 16/121 (13%)

Query: 52  QEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYL 111
           Q Q  +E+  P +L E  P +I      +   Q   +R       +  S +  + LR Y+
Sbjct: 664 QYQFTVEDPDPAVLAEWVPKLI------ERLKQEPELR-------DVASDQQNNGLRAYV 710

Query: 112 ---QDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDL 168
              +D +    I     +    +   Q  +  IF +S     +  T+  + +SPE    L
Sbjct: 711 EIDRDAAARFGITTAVIDSALYSAFGQRLVSTIFTQSSQYRVVLETMPQFRVSPESLSAL 770

Query: 169 E 169
            
Sbjct: 771 R 771


>gi|317057030|ref|YP_004105497.1| diguanylate cyclase [Ruminococcus albus 7]
 gi|315449299|gb|ADU22863.1| diguanylate cyclase with PAS/PAC sensor [Ruminococcus albus 7]
          Length = 1136

 Score = 38.1 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 10/112 (8%)

Query: 6   FPKNNNRKGKKK-PDGNHDFLFLEDCYDHAIEMKLQE-------AEEDPNFLSLQEQQQL 57
           + + N   G     D  H + F E+CYD A+EM   E       A E    +   EQ  +
Sbjct: 723 YIEYNTYNGGDVLSDAVHGWHFFEECYDAAVEMVYPEDRDLVIRAVERKTMMKALEQNNI 782

Query: 58  EEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRV 109
                RL+R+  P  + +          D   ++ V +++++  E   + R+
Sbjct: 783 FTMTYRLIRDGVPVYVTMKVTRM--KDDDRFIIMSVTNVDEQMKERQAAQRM 832


>gi|27378866|ref|NP_770395.1| ribose-5-phosphate isomerase A [Bradyrhizobium japonicum USDA 110]
 gi|41017725|sp|Q89NS9|RPIA_BRAJA RecName: Full=Ribose-5-phosphate isomerase A; AltName:
           Full=Phosphoriboisomerase A; Short=PRI
 gi|27352015|dbj|BAC49020.1| ribose 5-phosphate isomerase [Bradyrhizobium japonicum USDA 110]
          Length = 241

 Score = 38.1 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 119 EIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITK 176
            +      R+ +  DK G +   F+   G   ++  L      P +A  L  I G+ +
Sbjct: 157 GVSGQMAVRKAKGGDKDGHV---FVTDGGHWILDAQLGRIVDPPSLAKALSAIPGVVE 211


>gi|160885592|ref|ZP_02066595.1| hypothetical protein BACOVA_03594 [Bacteroides ovatus ATCC 8483]
 gi|237719632|ref|ZP_04550113.1| RNA polymerase ECF-type sigma factor [Bacteroides sp. 2_2_4]
 gi|156109214|gb|EDO10959.1| hypothetical protein BACOVA_03594 [Bacteroides ovatus ATCC 8483]
 gi|229450901|gb|EEO56692.1| RNA polymerase ECF-type sigma factor [Bacteroides sp. 2_2_4]
          Length = 190

 Score = 37.7 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 30  CYDHAIEMKLQEAEEDPNFLSLQE-QQQLEEEKPRLLREKKPYIIVVSQEDKLSLQ---R 85
           CY+H    ++Q + EDP+F  ++E   ++E+   RL    +    +   +DK   +    
Sbjct: 93  CYEHMFAKEMQTSFEDPDFYVVEELMAKIEKAVMRLPDSYRITFEMSRYQDKTYKEIAKE 152

Query: 86  DSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREI 120
            ++ +  VE   ++++ +   LRV L+D  PL  I
Sbjct: 153 LNVSIKLVEYRIQQALRL---LRVELKDYLPLITI 184


>gi|258625634|ref|ZP_05720515.1| GTP-binding protein HflX [Vibrio mimicus VM603]
 gi|258582089|gb|EEW06957.1| GTP-binding protein HflX [Vibrio mimicus VM603]
          Length = 429

 Score = 37.3 bits (85), Expect = 0.81,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 10/119 (8%)

Query: 33  HAIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSI 88
            A+E  LQE  A E P  L + +   LEE+ PR+ R  E  P ++ +S    +      +
Sbjct: 296 QAVETVLQEIDAHEVPTLLVMNKIDSLEEQAPRIERDDEGIPRVVWISA---MQGSGIEL 352

Query: 89  RLLWV-ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146
               + E L  + +E    LR+  + +  +R      +  Q + YD +G + +     Q
Sbjct: 353 LFQTLSERLASQVVEHH--LRIPPRHQGRIRSTFFQMKCIQQEEYDPEGNLLITVRMQQ 409


>gi|91779564|ref|YP_554772.1| non-ribosomal peptide synthase [Burkholderia xenovorans LB400]
 gi|91692224|gb|ABE35422.1| Non-ribosomal peptide synthase [Burkholderia xenovorans LB400]
          Length = 3180

 Score = 37.3 bits (85), Expect = 0.81,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 6/72 (8%)

Query: 114  RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172
              P     + +           G +  +     G+++ ++ L    I   EI   L    
Sbjct: 2944 PDPFAHGARLYRTGDLACRRADGALDYL-----GRMDTQVKLRGQRIELGEIEALLRAAP 2998

Query: 173  GITKVVQVIHNE 184
            G+   V ++ +E
Sbjct: 2999 GVHDAVVIVRDE 3010


>gi|320160344|ref|YP_004173568.1| putative S1B family peptidase [Anaerolinea thermophila UNI-1]
 gi|319994197|dbj|BAJ62968.1| putative S1B family peptidase [Anaerolinea thermophila UNI-1]
          Length = 544

 Score = 37.3 bits (85), Expect = 0.85,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 2/105 (1%)

Query: 63  RLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHK 122
           +L  E++  +I+   +D  + +   +R    E     S  M+    +   +  P + I  
Sbjct: 326 KLDEEQRGALIIEVAKDSPADKA-GLRGSTEEVKLDGSTAMVGGDVIVAINGEPTQTIED 384

Query: 123 YFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFD 167
                 T+      ++ +  LR   +  + +TL+  P S + A  
Sbjct: 385 VIAYLATKTNVGD-QVNITILRDGKEKTVSVTLEARPSSKQTASA 428


>gi|138894637|ref|YP_001125090.1| YlbL protein [Geobacillus thermodenitrificans NG80-2]
 gi|196247754|ref|ZP_03146456.1| PDZ/DHR/GLGF domain protein [Geobacillus sp. G11MC16]
 gi|134266150|gb|ABO66345.1| YlbL protein [Geobacillus thermodenitrificans NG80-2]
 gi|196212538|gb|EDY07295.1| PDZ/DHR/GLGF domain protein [Geobacillus sp. G11MC16]
          Length = 339

 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 14/133 (10%)

Query: 33  HAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVS---QEDKLSLQRDSIR 89
           H +E   QE E D  +      +QLE     L+ + K   IVV+       ++ +   + 
Sbjct: 81  HPVEEIKQEGESDKEY----TMRQLE-----LMEQSKEAAIVVAYQHAGKPVTNEAKGVY 131

Query: 90  LLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKI 149
           ++ V      +  +    R+   D  P+    +   +   +      ++ + F+R + + 
Sbjct: 132 VMSVLPNMPAAGRLEAGDRIAAIDGQPINT-SEQIVSYVREKQAGD-RVRVTFIRDRKQH 189

Query: 150 EIEITLDHYPISP 162
           E E+ L  +P  P
Sbjct: 190 EAELVLKPFPHHP 202


>gi|90424858|ref|YP_533228.1| amino acid adenylation [Rhodopseudomonas palustris BisB18]
 gi|90106872|gb|ABD88909.1| Amino acid adenylation [Rhodopseudomonas palustris BisB18]
          Length = 1059

 Score = 36.6 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHIT 172
           R+PL +I +Y    Q       G++        G+ + ++ L  Y + P EI   L    
Sbjct: 827 RTPLSDIPEYRTGDQVSLGF-DGRLLF-----HGRRDRQVKLAGYRVEPGEIEAALRAHP 880

Query: 173 GITKVVQVI 181
           GI +   V+
Sbjct: 881 GILEAAVVV 889


>gi|158424870|ref|YP_001526162.1| vicibactin biosynthesis non-ribosomal peptide synthase protein
           [Azorhizobium caulinodans ORS 571]
 gi|158331759|dbj|BAF89244.1| vicibactin biosynthesis non-ribosomal peptide synthase protein
           [Azorhizobium caulinodans ORS 571]
          Length = 1344

 Score = 36.6 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 6/51 (11%)

Query: 135 QGKIGLIFLRSQGKIEIEITLDHYPISP-EIAFDLEHITGITKVVQVIHNE 184
            G +  +     G+++ ++ L  Y I P EI   L  + G+++   V+ ++
Sbjct: 869 DGTVEFV-----GRVDHQVKLRGYRIEPGEIEAALRTLPGVSECAVVLRHD 914


>gi|330723884|gb|AEC46254.1| hypothetical protein SRH_03585 [Mycoplasma hyorhinis MCLD]
          Length = 350

 Score = 36.6 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 57/153 (37%), Gaps = 19/153 (12%)

Query: 25  LFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQ 84
           L + DC+DH I+    EA E P+F+ + +   ++E    + +  K  + +    D  ++ 
Sbjct: 17  LGIVDCHDHLIKNYGPEAHEHPDFIMMSKDAAIKEMNEYVAKGGKTVVTM----DPPNVG 72

Query: 85  RDSIRLLWV-ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFL 143
           RD  ++L + + LE K+          +      +                   + ++  
Sbjct: 73  RDVYQMLDIAKKLEGKAN--------IIMATGFHKAAFYDKGASWLALAPTDKIVKMVV- 123

Query: 144 RSQGKIEIEITLDHYPISPEIAFDLEHITGITK 176
                 EIE  +D Y  S  +    +   GI K
Sbjct: 124 -----AEIEEGMDEYNYSGPVVKRSKSKAGIIK 151


>gi|304373246|ref|YP_003856455.1| hypothetical protein MHR_0460 [Mycoplasma hyorhinis HUB-1]
 gi|304309437|gb|ADM21917.1| hypothetical protein MHR_0460 [Mycoplasma hyorhinis HUB-1]
          Length = 350

 Score = 36.2 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 57/153 (37%), Gaps = 19/153 (12%)

Query: 25  LFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQ 84
           L + DC+DH I+    EA E P+F+ + +   ++E    + +  K  + +    D  ++ 
Sbjct: 17  LGIVDCHDHLIKNYGPEAHEHPDFIMMSKDAAIKEMNEYVAKGGKTVVTM----DPPNVG 72

Query: 85  RDSIRLLWV-ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFL 143
           RD  ++L + + LE K+          +      +                   + ++  
Sbjct: 73  RDVYQMLDIAKKLEGKAN--------IIMATGFHKAAFYDKGASWLALAPTDKIVKMVV- 123

Query: 144 RSQGKIEIEITLDHYPISPEIAFDLEHITGITK 176
                 EIE  +D Y  S  +    +   GI K
Sbjct: 124 -----AEIEEGMDEYNYSGPVVKRSKSKAGIIK 151


>gi|330940476|gb|EGH43565.1| hypothetical protein PSYPI_14723 [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 490

 Score = 36.2 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 55/135 (40%), Gaps = 10/135 (7%)

Query: 52  QEQQQLEEEKPRLLR-EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVY 110
           Q+QQ ++E++P  L        ++ +Q   L   +  I L  + SL+  + E    + V 
Sbjct: 315 QQQQAVQEKRPFRLELSPADQELMNTQMKTLLAAKPHIELEKL-SLKTSNGESHMRIAVD 373

Query: 111 LQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRS--------QGKIEIEITLDHYPISP 162
           L D  PL +       +     + +  +    +R         +G+ ++++  D    + 
Sbjct: 374 LADPGPLDQPSDALLKKSLGEVNAKVVLSKPMIRDLATQQAMREGQTDLKVIADQAKAAG 433

Query: 163 EIAFDLEHITGITKV 177
           ++A  +  +  + KV
Sbjct: 434 DMASAMAEMMQLAKV 448


>gi|160915731|ref|ZP_02077939.1| hypothetical protein EUBDOL_01740 [Eubacterium dolichum DSM 3991]
 gi|158432207|gb|EDP10496.1| hypothetical protein EUBDOL_01740 [Eubacterium dolichum DSM 3991]
          Length = 283

 Score = 36.2 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 14/99 (14%)

Query: 18  PDGNHDFLFLEDCYDHAIEMKLQ----EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYII 73
              N +FLFL+  Y+  ++  +Q    EAE+ P+++ ++  +++  + P         +I
Sbjct: 171 SSSNANFLFLQISYESDLDKAMQIIREEAEKHPHYMDIRNAEEIAADMP-------NIVI 223

Query: 74  VVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQ 112
            V            +R       + +   ML  LR+ ++
Sbjct: 224 RVI---DFMDSGIQLRATIPSRSKAEGFAMLSDLRISIK 259


>gi|258654001|ref|YP_003203157.1| amino acid adenylation domain-containing protein [Nakamurella
            multipartita DSM 44233]
 gi|258557226|gb|ACV80168.1| amino acid adenylation domain protein [Nakamurella multipartita DSM
            44233]
          Length = 5698

 Score = 36.2 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 147  GKIEIEITLDHYPISP-EIAFDLEHITGITKVVQVIHN 183
            G+I+ ++ +  Y + P EIA  L    G+   V  +H+
Sbjct: 1966 GRIDDQVKIRGYRVEPGEIAAQLRRCPGVRDAVVTVHD 2003


>gi|223648604|gb|ACN11060.1| Tripartite motif-containing protein 25 [Salmo salar]
          Length = 450

 Score = 36.2 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 7/99 (7%)

Query: 35  IEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVE 94
           +  KL +AE+     SLQEQ++ E+   + L +    I+ V +E ++ L+     L    
Sbjct: 234 VGRKLSKAEK-----SLQEQKEEEQINKKFLEDSDQRIMAVGEELQVHLEGFLTALRDCT 288

Query: 95  SLEKKSM--EMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
             ++      +  ++    +D + L+++H   +N   +N
Sbjct: 289 RSQESECGPNIQRNIAKVAKDHARLQDVHSRIQNLAQEN 327


>gi|258623500|ref|ZP_05718502.1| GTP-binding protein HflX [Vibrio mimicus VM573]
 gi|262163593|ref|ZP_06031336.1| GTP-binding protein HflX [Vibrio mimicus VM223]
 gi|262172554|ref|ZP_06040232.1| GTP-binding protein HflX [Vibrio mimicus MB-451]
 gi|258584212|gb|EEW08959.1| GTP-binding protein HflX [Vibrio mimicus VM573]
 gi|261893630|gb|EEY39616.1| GTP-binding protein HflX [Vibrio mimicus MB-451]
 gi|262027960|gb|EEY46622.1| GTP-binding protein HflX [Vibrio mimicus VM223]
          Length = 429

 Score = 35.8 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 10/119 (8%)

Query: 33  HAIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSI 88
            A+E  LQE  A E P  L + +   LEE+ PR+ R  E  P ++ +S    +      +
Sbjct: 296 QAVETVLQEIDAHEVPTLLVMNKIDSLEEQAPRIERDDEGIPRVVWISA---MQGSGIEL 352

Query: 89  RLLWV-ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146
               + E L  + +E    LR+  + +  +R      +  Q + YD +G + +     Q
Sbjct: 353 LFQALSERLASQVVEHH--LRIPPRHQGRIRSTFFQMKCIQQEEYDPEGNLLITVRMQQ 409


>gi|320162224|ref|YP_004175449.1| putative ABC transporter ATP-binding protein [Anaerolinea
           thermophila UNI-1]
 gi|319996078|dbj|BAJ64849.1| putative ABC transporter ATP-binding protein [Anaerolinea
           thermophila UNI-1]
          Length = 314

 Score = 35.8 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 39/110 (35%), Gaps = 5/110 (4%)

Query: 71  YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
            II+      L  +     L  V+SL+++ + +L S  +  Q ++    +  +   R   
Sbjct: 156 IIIMDEPTQGLDPEGAREFLQLVQSLKEEGITILLSSHLLHQVQAICDRVGLFNRGRMEL 215

Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKVVQV 180
                     +           + ++   I+PE+   L+ + G   V  +
Sbjct: 216 VGTVDELARRVL-----GRAFRVVMEVDDITPELTKALKKVPGAVDVYPL 260


>gi|71745330|ref|XP_827295.1| small nuclear RNA gene activation protein 50 [Trypanosoma brucei]
 gi|70831460|gb|EAN76965.1| small nuclear RNA gene activation protein (SNAP) 50, putative
           [Trypanosoma brucei]
          Length = 448

 Score = 35.4 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 8/131 (6%)

Query: 41  EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
           EAE+    L  +  + LEEE P L       ++   +     ++ +  R L     E   
Sbjct: 79  EAEDAMRKLEARLDRLLEEEGPNLPELPTRRVLSKMERIVTQVKEEGERQLARVREEYSE 138

Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEI-EITLDHYP 159
            E   +L  +L D  P++ +      R+  + +  G+   + +  +G  E+       YP
Sbjct: 139 CERRPALLQFLVDLEPVKRL------REQLDEEYDGRKLRLKVMDEGNSELFRQAEPRYP 192

Query: 160 ISPEIAFDLEH 170
            +  IA  L H
Sbjct: 193 -NKGIAASLRH 202


>gi|195336800|ref|XP_002035021.1| GM14147 [Drosophila sechellia]
 gi|194128114|gb|EDW50157.1| GM14147 [Drosophila sechellia]
          Length = 4635

 Score = 35.4 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 6/142 (4%)

Query: 27  LEDCYDHAIEMKLQEAE-EDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQ- 84
           LED  +  +E   +++E E+P+        + EE+K     +KK   I   Q ++ S + 
Sbjct: 797 LEDTVEKPLEALQEDSELENPDVQEFCVSIKEEEKKHTHPEKKKSSKITAEQPNQPSTEQ 856

Query: 85  -RDSIRLLWVESLEKK--SMEMLDSLRVYLQDRSPLREIHKYFEN-RQTQNYDKQGKIGL 140
              S+    ++  E+K  +++++ S     + +    ++HK     R  +    +G+I +
Sbjct: 857 YEISVTQQELKPEEEKPFTVQVIQSETNVEETKDDTGKVHKQVTTKRMLRRPAGEGEIEI 916

Query: 141 IFLRSQGKIEIEITLDHYPISP 162
           I +    + E EIT+  Y   P
Sbjct: 917 IEVVRDDQPEAEITIVEYEPEP 938


>gi|261331505|emb|CBH14499.1| small nuclear RNA gene activation protein (SNAP) 50, putative
           [Trypanosoma brucei gambiense DAL972]
          Length = 448

 Score = 35.4 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 8/131 (6%)

Query: 41  EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
           EAE+    L  +  + LEEE P L       ++   +     ++ +  R L     E   
Sbjct: 79  EAEDAMRKLEARLDRLLEEEGPNLPELPTRRVLSKMERIVTQVKEEGERQLARVREEYSE 138

Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEI-EITLDHYP 159
            E   +L  +L D  P++ +      R+  + +  G+   + +  +G  E+       YP
Sbjct: 139 CERRPALLQFLVDLEPVKRL------REQLDEEYDGRKLRLKVMDEGNSELFRHAEPRYP 192

Query: 160 ISPEIAFDLEH 170
            +  IA  L H
Sbjct: 193 -NKGIAASLRH 202


>gi|254292140|ref|ZP_04962912.1| GTP-binding protein HflX [Vibrio cholerae AM-19226]
 gi|150421939|gb|EDN13914.1| GTP-binding protein HflX [Vibrio cholerae AM-19226]
          Length = 429

 Score = 35.4 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 10/119 (8%)

Query: 33  HAIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSI 88
            A+E  LQE  A E P  L + +   LEE+ PR+ R  E  P ++ +S    +      +
Sbjct: 296 QAVETVLQEIDAHEVPTLLVMNKIDNLEEQSPRIERDDEGVPRVVWISA---MQGAGIEL 352

Query: 89  RLLWV-ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146
               + E L  + +E    LR+  + +  +R         Q + YD +G + +     Q
Sbjct: 353 LFEALSERLASQVVEHH--LRIPPRHQGRIRSTFFQMNCIQQEEYDPEGNLLITVRMQQ 409


>gi|37496897|emb|CAE46454.1| small nuclear RNA gene activation protein 50 [Trypanosoma brucei
           brucei]
          Length = 448

 Score = 35.4 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 8/131 (6%)

Query: 41  EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
           EAE+    L  +  + LEEE P L       ++   +     ++ +  R L     E   
Sbjct: 79  EAEDAMRKLEARLDRLLEEEGPNLPELPTRRVLSKMERIVTQVKEEGERQLARVREEYSE 138

Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEI-EITLDHYP 159
            E   +L  +L D  P++ +      R+  + +  G+   + +  +G  E+       YP
Sbjct: 139 CERRPALLQFLVDLEPVKRL------REQLDEEYDGRKLRLKVMDEGNSELFRHAEPRYP 192

Query: 160 ISPEIAFDLEH 170
            +  IA  L H
Sbjct: 193 -NKGIAASLRH 202


>gi|153217190|ref|ZP_01950954.1| GTP-binding protein HflX [Vibrio cholerae 1587]
 gi|153803483|ref|ZP_01958069.1| GTP-binding protein HflX [Vibrio cholerae MZO-3]
 gi|153827316|ref|ZP_01979983.1| GTP-binding protein HflX [Vibrio cholerae MZO-2]
 gi|153830894|ref|ZP_01983561.1| GTP-binding protein HflX [Vibrio cholerae 623-39]
 gi|229512374|ref|ZP_04401849.1| GTP-binding protein HflX [Vibrio cholerae TMA 21]
 gi|229526912|ref|ZP_04416315.1| GTP-binding protein HflX [Vibrio cholerae bv. albensis VL426]
 gi|297582276|ref|ZP_06944190.1| GTP-binding protein HflX [Vibrio cholerae RC385]
 gi|124113773|gb|EAY32593.1| GTP-binding protein HflX [Vibrio cholerae 1587]
 gi|124120984|gb|EAY39727.1| GTP-binding protein HflX [Vibrio cholerae MZO-3]
 gi|148873628|gb|EDL71763.1| GTP-binding protein HflX [Vibrio cholerae 623-39]
 gi|149738782|gb|EDM53124.1| GTP-binding protein HflX [Vibrio cholerae MZO-2]
 gi|229336081|gb|EEO01100.1| GTP-binding protein HflX [Vibrio cholerae bv. albensis VL426]
 gi|229350589|gb|EEO15534.1| GTP-binding protein HflX [Vibrio cholerae TMA 21]
 gi|297533495|gb|EFH72342.1| GTP-binding protein HflX [Vibrio cholerae RC385]
 gi|327483210|gb|AEA77617.1| GTP-binding protein HflX [Vibrio cholerae LMA3894-4]
          Length = 429

 Score = 35.4 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 10/119 (8%)

Query: 33  HAIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSI 88
            A+E  LQE  A E P  L + +   LEE+ PR+ R  E  P ++ +S    +      +
Sbjct: 296 QAVETVLQEIDAHEVPTLLVMNKIDNLEEQSPRIERDDEGVPRVVWISA---MQGAGIEL 352

Query: 89  RLLWV-ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146
               + E L  + +E    LR+  + +  +R         Q + YD +G + +     Q
Sbjct: 353 LFEALSERLASQVVEHH--LRIPPRHQGRIRSTFFQMNCIQQEEYDPEGNLLITVRMQQ 409


>gi|229519943|ref|ZP_04409374.1| GTP-binding protein HflX [Vibrio cholerae TM 11079-80]
 gi|229343071|gb|EEO08058.1| GTP-binding protein HflX [Vibrio cholerae TM 11079-80]
          Length = 429

 Score = 35.4 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 10/119 (8%)

Query: 33  HAIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSI 88
            A+E  LQE  A E P  L + +   LEE+ PR+ R  E  P ++ +S    +      +
Sbjct: 296 QAVETVLQEIDAHEVPTLLVMNKIDNLEEQSPRIERDDEGVPRVVWISA---MQGAGIEL 352

Query: 89  RLLWV-ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146
               + E L  + +E    LR+  + +  +R         Q + YD +G + +     Q
Sbjct: 353 LFEALSERLASQVVEHH--LRIPPRHQGRIRSTFFQMNCIQQEEYDPEGNLLITVRMQQ 409


>gi|50510945|dbj|BAD32458.1| mKIAA1476 protein [Mus musculus]
          Length = 1369

 Score = 35.0 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 74/177 (41%), Gaps = 22/177 (12%)

Query: 12   RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLL--REKK 69
            RKG+    G+ +FL   D  D  +  KLQ  E       ++  ++L++++   +    KK
Sbjct: 847  RKGRPPNVGSAEFL---DNTDAKLLRKLQAQEIARQAAQIKLLRKLQKQEQARVAKEAKK 903

Query: 70   PYIIVVSQEDKLSLQRDSI--------RLLWV---------ESLEKKSMEMLDSLRVYLQ 112
               I+ ++E +   ++  I        R+  +         + LE+K +    ++ +  Q
Sbjct: 904  QQAIMAAEEKRKQKEQMKIIKQQEKIKRIQQIRMEKELRAQQILEEKELRRQQAVLLKHQ 963

Query: 113  DRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLE 169
            +R   R+     +  + +   ++ +      R + ++  E  L+   +  E+A +L+
Sbjct: 964  ERERRRQHVMLMKAMEARKKAEEKERLKQEKRDEKRLNKERKLEQRRLELEMAKELK 1020


>gi|328873605|gb|EGG21972.1| hypothetical protein DFA_01858 [Dictyostelium fasciculatum]
          Length = 1107

 Score = 35.0 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 12/107 (11%)

Query: 8   KNNNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQL--EEEKPRLL 65
            N N   ++    NH F  LED +++ I       EED  F SLQ  ++L  +E + +L+
Sbjct: 544 NNGNPFNQEMNASNHSFYDLEDHHNYYI-------EEDEEFKSLQFARKLIEDERRAQLV 596

Query: 66  RE---KKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRV 109
            E    +  ++ + + ++   ++   +      LE K ++    L V
Sbjct: 597 EEEENNRRLVLELLENEREEHEKSRQQQQTNNDLETKCVKCQKQLAV 643


>gi|296204397|ref|XP_002806949.1| PREDICTED: LOW QUALITY PROTEIN: titin-like [Callithrix jacchus]
          Length = 34170

 Score = 35.0 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 15   KKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIV 74
            K  P+   DFLF+     H+    LQE   +     +Q Q+   +E   +L E +  +++
Sbjct: 3635 KPTPESTRDFLFIHGSV-HS--QPLQEPSPNLQLQIVQSQKTFSKEGILMLEEPESQVVL 3691

Query: 75   VSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRV 109
               E        ++ +    SL   ++E L +L V
Sbjct: 3692 SDTEKIFPS---AMSIEQTNSL---TVEYLKTLLV 3720


>gi|170043669|ref|XP_001849500.1| wd-repeat protein [Culex quinquefasciatus]
 gi|167867017|gb|EDS30400.1| wd-repeat protein [Culex quinquefasciatus]
          Length = 1915

 Score = 34.6 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 36  EMKLQEAEEDPNFLSLQEQ--QQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWV 93
           E+ L E  +DP FLSL++Q  +Q  + K +LL ++K  I+    E +   +    R   +
Sbjct: 778 ELTLTEDIDDPAFLSLEQQKIKQENDRKAKLLNDRKNEILNTVAEYRKQFEAILARNQAL 837


>gi|262189578|ref|ZP_06047982.1| GTP-binding protein HflX [Vibrio cholerae CT 5369-93]
 gi|262034542|gb|EEY52878.1| GTP-binding protein HflX [Vibrio cholerae CT 5369-93]
          Length = 429

 Score = 34.6 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 10/119 (8%)

Query: 33  HAIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSI 88
            A+E  LQE  A E P  L + +   LEE+ PR+ R  E  P ++ +S    +      +
Sbjct: 296 QAVETVLQEIDAHEVPTLLVMNKIDNLEEQSPRIERDDEGVPRVVWISA---MQGSGIEL 352

Query: 89  RLLWV-ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146
               + E L  + +E    LR+  + +  +R         Q + YD +G + +     Q
Sbjct: 353 LFEALSEHLASQVVEHH--LRIPPRHQGRIRSTFFQMNCIQQEEYDPEGNLLITVRMQQ 409


>gi|123489764|ref|XP_001325460.1| Myb-like DNA-binding domain containing protein [Trichomonas vaginalis
            G3]
 gi|121908360|gb|EAY13237.1| Myb-like DNA-binding domain containing protein [Trichomonas vaginalis
            G3]
          Length = 2210

 Score = 34.6 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 8    KNNNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLRE 67
            +NN+ + K+ P  N      E     + E+K Q   E   F S ++++  E +K  LL  
Sbjct: 1888 QNNSEQKKQNPPENKKANVPELKKSTSFELKKQNVSESKKFNSPEQKKSPESKKSPLLEP 1947

Query: 68   KKP 70
            KK 
Sbjct: 1948 KKS 1950


>gi|229526988|ref|ZP_04416384.1| GTP-binding protein HflX [Vibrio cholerae 12129(1)]
 gi|229335511|gb|EEO00992.1| GTP-binding protein HflX [Vibrio cholerae 12129(1)]
          Length = 429

 Score = 34.6 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 10/119 (8%)

Query: 33  HAIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSI 88
            A+E  LQE  A E P  L + +   LEE+ PR+ R  E  P ++ +S    +      +
Sbjct: 296 QAVETVLQEIDAHEVPTLLVMNKIDNLEEQSPRIERDDEGVPRVVWLSA---MQGAGIEL 352

Query: 89  RLLWV-ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146
               + E L  + +E    LR+  + +  +R         Q + YD +G + +     Q
Sbjct: 353 LFEALSERLASQVVEHH--LRIPPRHQGRIRSTFFQMNCIQQEEYDPEGNLLITVRMQQ 409


>gi|262401560|ref|ZP_06078127.1| GTP-binding protein HflX [Vibrio sp. RC586]
 gi|262352275|gb|EEZ01404.1| GTP-binding protein HflX [Vibrio sp. RC586]
          Length = 429

 Score = 34.6 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 11/119 (9%)

Query: 33  HAIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSI 88
            A+E  LQE  A E P  L + +   LEE+ PR+ R  E  P I+ +S    +      +
Sbjct: 296 QAVETVLQEIDAHEVPTLLVMNKIDNLEEQTPRIERDDEGVPKIVWISA---MQGTGIEL 352

Query: 89  RLLWV-ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146
               + E L  + +E   +LR+  + +  +R         Q + YD +G + LI +R Q
Sbjct: 353 LFEALSERLASQVVEH--NLRIPPRHQGRIRSTFFQMNCIQQEEYDPEGNL-LITVRMQ 408


>gi|167392422|ref|XP_001740146.1| chromodomain helicase DNA binding protein [Entamoeba dispar SAW760]
 gi|165895824|gb|EDR23413.1| chromodomain helicase DNA binding protein, putative [Entamoeba
           dispar SAW760]
          Length = 1623

 Score = 34.3 bits (77), Expect = 6.9,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 58/128 (45%), Gaps = 5/128 (3%)

Query: 16  KKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVV 75
           K+   N +FL  E+   +      QE+    +F S++++ +++EE+P  ++ K+      
Sbjct: 72  KETGNNTNFLLKENTQSNEQTKVKQESYIINSFESVKQETKIDEEQP--IQPKQMKHEEN 129

Query: 76  SQEDKLSLQRDSIRLLWVESLEKKSMEM---LDSLRVYLQDRSPLREIHKYFENRQTQNY 132
               K+  +     +   ++L+K  +      + ++++++   PL+ IH   +    Q  
Sbjct: 130 VLVPKIDGEGIKQEITQEQNLQKNDLNHKVKQEDIQIHVKQEQPLQHIHNPLQPPIQQIN 189

Query: 133 DKQGKIGL 140
            +  KI L
Sbjct: 190 QQNQKIPL 197


>gi|301618713|ref|XP_002938754.1| PREDICTED: serine/threonine-protein kinase MRCK alpha-like [Xenopus
           (Silurana) tropicalis]
          Length = 1590

 Score = 34.3 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 33  HAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLL 91
           H  E KLQEAEE        E ++L  E  ++  E K   I  +++ +  +   S R  
Sbjct: 864 HNTERKLQEAEE--------ENRKLRAEVEKVREEAKQKAITETKQQRPLIPFLSFRTE 914


>gi|261209769|ref|ZP_05924075.1| GTP-binding protein HflX [Vibrio sp. RC341]
 gi|260841185|gb|EEX67695.1| GTP-binding protein HflX [Vibrio sp. RC341]
          Length = 429

 Score = 34.3 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 11/119 (9%)

Query: 33  HAIEMKLQE--AEEDPNFLSLQEQQQLEEEKPRLLR--EKKPYIIVVSQEDKLSLQRDSI 88
            A+E  LQE  A E P  L + +   LEE  PR+ R  E  P ++ +S    +      +
Sbjct: 296 QAVETVLQEIDAHEVPTLLVMNKIDNLEEHAPRIERDDEGVPRVVWISA---MQGTGIEL 352

Query: 89  RLLWV-ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146
               + E L  + +E   +LR+  + +  +R         Q + YD +G + LI +R Q
Sbjct: 353 LFEALSERLASQVVEH--NLRIPPRHQGRIRSTFFQMNCIQQEEYDPEGNL-LITVRLQ 408


>gi|330982386|gb|EGH80489.1| hypothetical protein PSYAP_28151 [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 286

 Score = 34.3 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 52  QEQQQLEEEKPRLLR-EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVY 110
           Q+QQ  +E++P  L        ++ SQ   L   +  I L  + SL+  + E    + V 
Sbjct: 111 QQQQAAQEKRPFRLELSPADQELMNSQMKTLLAAKPHIELEKL-SLKTSNGESHMRIAVD 169

Query: 111 LQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRS--------QGKIEIEITLDHYPISP 162
           L D  PL +       +     + +  +    +R         +G+ ++++  D    + 
Sbjct: 170 LADPGPLDQPSDALLMKSLGEVNAKVVLSKPMIRDLATQQAMREGQTDLKVIADQAKAAG 229

Query: 163 EIAFDLEHITGITKV 177
           ++A  +  +  + KV
Sbjct: 230 DMASAMAEMMQLAKV 244


>gi|118380733|ref|XP_001023530.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
            containing protein [Tetrahymena thermophila]
 gi|89305297|gb|EAS03285.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
            containing protein [Tetrahymena thermophila SB210]
          Length = 2315

 Score = 33.9 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 17/142 (11%)

Query: 16   KKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVV 75
            KK         + D +  A+++KLQE + +  F+  + QQ L + +PR L+ K  +    
Sbjct: 1038 KKSYPQSQIFLIADLWQEAMQLKLQEIDWE-KFIIQKFQQLLSKYQPRQLKPKFSF---- 1092

Query: 76   SQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQ 135
              + K      + R+  ++  E            ++Q+ SP   I +   NR   N    
Sbjct: 1093 --DQKSYQFAVNFRINKIQKEEDN----QKI--SFVQNLSPHFSIQRIKHNRTNMN---- 1140

Query: 136  GKIGLIFLRSQGKIEIEITLDH 157
            G+     ++     E++ +L+ 
Sbjct: 1141 GENSSNSIKQSQIEEVKQSLNR 1162


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.307    0.135    0.349 

Lambda     K      H
   0.267   0.0413    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,090,647,755
Number of Sequences: 13984884
Number of extensions: 113756205
Number of successful extensions: 451667
Number of sequences better than 10.0: 332
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 485
Number of HSP's that attempted gapping in prelim test: 450714
Number of HSP's gapped (non-prelim): 1114
length of query: 184
length of database: 4,792,584,752
effective HSP length: 130
effective length of query: 54
effective length of database: 2,974,549,832
effective search space: 160625690928
effective search space used: 160625690928
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 77 (34.3 bits)