RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.754_1
         (184 letters)



>gnl|CDD|37847 KOG2636, KOG2636, KOG2636, Splicing factor 3a, subunit 3 [RNA
           processing and modification].
          Length = 497

 Score = 28.8 bits (64), Expect = 0.82
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 16  KKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYI 72
              +G   FL L DCY   I +K  E  +   +L   +Q   +  K +  RE   YI
Sbjct: 130 SGEEGYGRFLDLHDCYRKYINLKNVERVDYLEYLKNFDQLD-DIPKEKKNREYLNYI 185


>gnl|CDD|35383 KOG0161, KOG0161, KOG0161, Myosin class II heavy chain
            [Cytoskeleton].
          Length = 1930

 Score = 27.5 bits (61), Expect = 2.4
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 35   IEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVE 94
            IE +LQE +E+   L    Q+QLE  +  L  E +     +  + KL    + +  + ++
Sbjct: 1563 IERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELE-IQLD 1621

Query: 95   SLEKKSMEMLDSLRVY 110
               K + +    L+  
Sbjct: 1622 HANKANEDAQKQLKKL 1637


>gnl|CDD|177026 CHL00094, dnaK, heat shock protein 70.
          Length = 621

 Score = 26.6 bits (59), Expect = 3.7
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 9/88 (10%)

Query: 35  IEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRD---SIRLL 91
           I++K Q AE     L  Q ++QL+E K ++  EKK  I  + ++ + +LQ D   SI+ L
Sbjct: 528 IDLKNQ-AES----LCYQAEKQLKELKDKISEEKKEKIENLIKKLRQALQNDNYESIKSL 582

Query: 92  WVESLEKKSMEMLDSLRVYLQDRSPLRE 119
            +E L+K  ME+   +        P   
Sbjct: 583 -LEELQKALMEIGKEVYSSTSTTDPASN 609


>gnl|CDD|37434 KOG2223, KOG2223, KOG2223, Uncharacterized conserved protein,
           contains TBC domain [Signal transduction mechanisms,
           General function prediction only].
          Length = 586

 Score = 26.2 bits (57), Expect = 5.0
 Identities = 12/58 (20%), Positives = 27/58 (46%)

Query: 52  QEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRV 109
           + ++ +++ K R  +E K    +V + ++L  +      +W   +     +ML S RV
Sbjct: 237 EYEEIVKQAKKRERKEAKERKKMVEERNRLEERIAYAVNVWENEILPNWEDMLKSRRV 294


>gnl|CDD|48576 cd03027, GRX_DEP, Glutaredoxin (GRX) family, Dishevelled, Egl-10,
           and Pleckstrin (DEP) subfamily; composed of
           uncharacterized proteins containing a GRX domain and
           additional domains DEP and DUF547, both of which have
           unknown functions.  GRX is a glutathione (GSH) dependent
           reductase containing a redox active CXXC motif in a TRX
           fold. It has preference for mixed GSH disulfide
           substrates, in which it uses a monothiol mechanism where
           only the N-terminal cysteine is required. By altering
           the redox state of target proteins, GRX is involved in
           many cellular functions..
          Length = 73

 Score = 26.4 bits (58), Expect = 5.4
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 142 FLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKVVQVIHNE 184
           FLR +G   +EI +D +P   E   +LE  TG + V Q+  NE
Sbjct: 20  FLREKGLPYVEINIDIFP---ERKAELEERTGSSVVPQIFFNE 59


>gnl|CDD|32960 COG3146, COG3146, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 387

 Score = 25.6 bits (56), Expect = 8.8
 Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 4/27 (14%)

Query: 21  NHDFLFLEDCY----DHAIEMKLQEAE 43
           +H FL  E CY    D AI   LQ  E
Sbjct: 300 DHPFLHFEVCYYQAIDFAIAEGLQRFE 326


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.318    0.138    0.389 

Gapped
Lambda     K      H
   0.267   0.0793    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,311,298
Number of extensions: 118991
Number of successful extensions: 402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 42
Length of query: 184
Length of database: 6,263,737
Length adjustment: 88
Effective length of query: 96
Effective length of database: 4,362,145
Effective search space: 418765920
Effective search space used: 418765920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.5 bits)