RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= 537021.9.peg.754_1 (184 letters) >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} (F:1-76) Length = 76 Score = 28.5 bits (63), Expect = 0.62 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Query: 97 EKKSMEMLD-SLRVYLQDRSPLREIHKYFE 125 EK++++ L SL++Y D +P I E Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47 >1p80_A Catalase HPII; beta barrel, channel, variant, oxidoreductase; HET: HEM; 1.65A {Escherichia coli} (A:125-581) Length = 457 Score = 27.9 bits (61), Expect = 0.96 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 97 EKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD 156 K ++LD ++ ++ P++ + K NR N+ + + F ++ T D Sbjct: 223 FKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFFAENE-QAAFHPGHIVPGLDFTND 281 >1a4e_A Catalase A; oxidoreductase, peroxidase; HET: HEM; 2.40A {Saccharomyces cerevisiae} (A:53-488) Length = 436 Score = 27.5 bits (60), Expect = 1.1 Identities = 11/42 (26%), Positives = 18/42 (42%) Query: 94 ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQ 135 +K + D +V+ Q + PLR + K N N+ Q Sbjct: 218 RDAKKLPFSVFDLTKVWPQGQFPLRRVGKIVLNENPLNFFAQ 259 >1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} (A:68-531) Length = 464 Score = 27.1 bits (59), Expect = 1.6 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 97 EKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD 156 K ++LD+ +++ +D P+R I + NR + Q + + F S I + D Sbjct: 223 HKFDFDILDATKIWPEDLVPVRYIGEMELNRNPDEFFPQTE-QIAFCTSHVVNGIGFSDD 281 >3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, calcium, cytoplasm, dioxygenase, fatty acid biosynthesis; HET: HEM; 3.51A {Plexaura homomalla} (A:65-339) Length = 275 Score = 25.6 bits (55), Expect = 3.9 Identities = 2/37 (5%), Positives = 11/37 (29%) Query: 97 EKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYD 133 + + + ++ ++ P ++ K Sbjct: 216 PDDTATIFHAGILWDKETHPWFDLAKVSIKTPLSPDV 252 >1n8i_A Probable malate synthase G; glyoxylate pathway, acetyl coenzyme A, isocitrate lyase, persistence, GLCB, structural genomics, PSI; 2.10A {Mycobacterium tuberculosis} (A:1-579) Length = 579 Score = 25.3 bits (55), Expect = 5.5 Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 3/65 (4%) Query: 118 REIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 ++ ++ T + G + + + L ++ + EI D E G T Sbjct: 198 GQLVVALPDKSTGLANPGQFAG--YTGAAESPT-SVLLINHGLHIEILIDPESQVGTTDR 254 Query: 178 VQVIH 182 V Sbjct: 255 AGVKD 259 >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 2b5n_A (A:554-692) Length = 139 Score = 24.8 bits (54), Expect = 7.9 Identities = 8/23 (34%), Positives = 10/23 (43%) Query: 84 QRDSIRLLWVESLEKKSMEMLDS 106 S R+L + S E EML Sbjct: 27 TDISARILKLPSFELLHKEMLGG 49 >2fgy_A Carboxysome shell polypeptide; beta class of carbonic anhydrase, lyase; 2.20A {Halothiobacillus neapolitanus} (A:176-420) Length = 245 Score = 24.8 bits (54), Expect = 8.6 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 4/36 (11%) Query: 104 LDSLRVYLQDRSPLREIHKYFEN----RQTQNYDKQ 135 D++RV++ D ++Y +N QT + Sbjct: 152 TDAIRVHIPDSKGFLNPYRYVDNTVTYAQTLHLAPD 187 >2j2m_A Catalase; functional class, oxidoreductase; HET: HEM; 2.4A {Exiguobacterium oxidotolerans} (A:53-491) Length = 439 Score = 24.4 bits (52), Expect = 9.5 Identities = 8/44 (18%), Positives = 19/44 (43%) Query: 94 ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGK 137 +E + LD+ + + +D P + + N+ NY + + Sbjct: 216 ADVENFDFDPLDATKDWFEDVIPFQHVGTMTLNKNVDNYFAETE 259 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.318 0.138 0.389 Gapped Lambda K H 0.267 0.0560 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,423,788 Number of extensions: 64846 Number of successful extensions: 205 Number of sequences better than 10.0: 1 Number of HSP's gapped: 202 Number of HSP's successfully gapped: 25 Length of query: 184 Length of database: 4,956,049 Length adjustment: 83 Effective length of query: 101 Effective length of database: 2,150,234 Effective search space: 217173634 Effective search space used: 217173634 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 52 (24.2 bits)