RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.754_1
         (184 letters)



>d1qwla_ e.5.1.1 (A:) Catalase I {Helicobacter pylori [TaxId: 210]}
          Length = 491

 Score = 29.1 bits (65), Expect = 0.25
 Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 19/94 (20%)

Query: 42  AEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSM 101
            + DP+         +         + K  I V+ +ED                 +K   
Sbjct: 235 RKHDPDSNQRDLFDAIARGDYP---KWKLSIQVMPEED----------------AKKYRF 275

Query: 102 EMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQ 135
              D  +++     PL E+     N+  +NY  +
Sbjct: 276 HPFDVTKIWYTQDYPLMEVGIVELNKNPENYFAE 309


>d1qd9a_ d.79.1.1 (A:) Purine regulatory protein YabJ {Bacillus
           subtilis [TaxId: 1423]}
          Length = 124

 Score = 27.0 bits (59), Expect = 0.88
 Identities = 9/55 (16%), Positives = 22/55 (40%)

Query: 100 SMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEIT 154
           S E +    V++ D     E+++ +      +   +  + +  L     +EIE+ 
Sbjct: 66  SFETVVKATVFIADMEQFAEVNEVYGQYFDTHKPARSCVEVARLPKDALVEIEVI 120


>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
          Length = 476

 Score = 27.2 bits (60), Expect = 0.98
 Identities = 8/44 (18%), Positives = 15/44 (34%)

Query: 94  ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGK 137
           +          D  +V+     PL ++  +  NR   NY    +
Sbjct: 263 KEASTVPYNPFDLTKVWPHADYPLMDVGYFELNRNPDNYFSDVE 306


>d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII
           [TaxId: 562]}
          Length = 571

 Score = 26.5 bits (58), Expect = 1.4
 Identities = 8/39 (20%), Positives = 19/39 (48%)

Query: 97  EKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQ 135
            K   ++LD  ++  ++  P++ + K   NR   N+  +
Sbjct: 321 FKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFFAE 359


>d1dgfa_ e.5.1.1 (A:) Catalase I {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 497

 Score = 26.0 bits (57), Expect = 1.8
 Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 19/94 (20%)

Query: 42  AEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSM 101
           ++EDP++        +   K         YI V++                    E    
Sbjct: 250 SQEDPDYGIRDLFNAIATGKYP---SWTFYIQVMTFNQ----------------AETFPF 290

Query: 102 EMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQ 135
              D  +V+     PL  + K   NR   NY  +
Sbjct: 291 NPFDLTKVWPHKDYPLIPVGKLVLNRNPVNYFAE 324


>d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 279

 Score = 25.6 bits (56), Expect = 2.5
 Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 23/112 (20%)

Query: 52  QEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYL 111
           QE+   E  K  L+  KK +++V    D +    DS    +  S + K    L    +Y 
Sbjct: 180 QERGVNESYKKNLMALKK-FVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYT 238

Query: 112 QDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPE 163
           QDR  L+ +            DK G+  L+FL  +G        DH  +S E
Sbjct: 239 QDRLGLKAM------------DKAGQ--LVFLALEG--------DHLQLSEE 268


>d1k7ha_ c.76.1.1 (A:) Alkaline phosphatase {Northern shrimp
          (Pandalus borealis) [TaxId: 6703]}
          Length = 476

 Score = 25.1 bits (54), Expect = 3.7
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 43 EEDPNFLSLQEQQQLEEEKPRLLREKKP-YIIV 74
          EED  + +   Q  L+++    LREK+   +I 
Sbjct: 1  EEDKAYWNKDAQDALDKQLGIKLREKQAKNVIF 33


>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
          recognition protein Ffh {Archaeon Acidianus ambivalens
          [TaxId: 2283]}
          Length = 211

 Score = 24.0 bits (51), Expect = 9.5
 Identities = 5/18 (27%), Positives = 15/18 (83%)

Query: 59 EEKPRLLREKKPYIIVVS 76
          +++P+++ +K PY+I++ 
Sbjct: 1  DKEPKVIPDKIPYVIMLV 18


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.138    0.389 

Gapped
Lambda     K      H
   0.267   0.0443    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 700,850
Number of extensions: 33179
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 15
Length of query: 184
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,309,196
Effective search space: 136156384
Effective search space used: 136156384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.8 bits)