Query 537021.9.peg.759_1 Match_columns 58 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 00:20:11 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_759.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2bsz_A Arylamine N-acetyltran 19.9 68 0.002 15.7 2.2 13 17-30 28-40 (40) 2 >3hi2_B Motility quorum-sensin 11.1 89 0.0026 15.1 0.8 11 16-26 67-77 (101) 3 >2wan_A Pullulanase; hydrolase 7.7 2.1E+02 0.0062 13.3 2.5 45 5-49 21-65 (91) 4 >2biw_A Apocarotenoid-cleaving 6.8 2.3E+02 0.0067 13.1 1.5 14 8-21 39-52 (56) 5 >1yvl_A Signal transducer and 6.7 1.8E+02 0.0054 13.6 0.9 13 37-49 110-122 (145) 6 >2e8y_A AMYX protein, pullulan 6.5 2.4E+02 0.0071 13.0 2.3 44 6-49 22-65 (99) 7 >3kk7_A Putative cell invasion 6.1 70 0.0021 15.7 -1.4 13 46-58 86-98 (106) 8 >1bf5_A Signal transducer and 5.8 1.8E+02 0.0054 13.6 0.5 13 37-49 110-122 (145) 9 >1pi7_A VPU protein, U ORF pro 5.7 1.6E+02 0.0048 13.8 0.3 24 5-28 8-31 (36) 10 >2fyq_A Chymotrypsin-like cyst 5.6 1.6E+02 0.0048 13.8 0.2 14 4-17 94-107 (194) No 1 >>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete proteome; 2.0A {Rhizobium loti} (A:144-183) Probab=19.95 E-value=68 Score=15.73 Aligned_cols=13 Identities=31% Similarity=0.945 Sum_probs=9.2 Q ss_pred EEEEEEEEEECCCC Q ss_conf 24668999955885 Q 537021.9.peg.7 17 IEWQEVYIEFSPTP 30 (58) Q Consensus 17 iewqevyiefsptp 30 (58) -+||.+| +|+..| T Consensus 28 ~~W~~lY-~Fdl~P 40 (40) T 2bsz_A 28 GDWRSLY-RFDLQP 40 (40) T ss_dssp TEEEEEE-EECCCC T ss_pred CCCEEEE-EECCCC T ss_conf 9846999-964514 No 2 >>3hi2_B Motility quorum-sensing regulator MQSR; toxin-antitoxin system, Zn-binding protein, MQSA, YGIU, YGIT, B3022, B3021, stress response; 2.00A {Escherichia coli k-12} (B:) Probab=11.11 E-value=89 Score=15.15 Aligned_cols=11 Identities=36% Similarity=0.661 Sum_probs=7.4 Q ss_pred CEEEEEEEEEE Q ss_conf 42466899995 Q 537021.9.peg.7 16 EIEWQEVYIEF 26 (58) Q Consensus 16 eiewqevyief 26 (58) .-.||.||--. T Consensus 67 h~iWQDVY~~~ 77 (101) T 3hi2_B 67 HTIWQDVYRPR 77 (101) T ss_dssp TTCCEEEECCE T ss_pred CCCCCEECCCC T ss_conf 98202213456 No 3 >>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus} (A:831-921) Probab=7.69 E-value=2.1e+02 Score=13.29 Aligned_cols=45 Identities=16% Similarity=0.392 Sum_probs=36.3 Q ss_pred HHHHHEECCCCCEEEEEEEEEECCCCCHHHCCCCCCEEEEEEECH Q ss_conf 320011010574246689999558852010039863279999944 Q 537021.9.peg.7 5 IAALLIRRTTGEIEWQEVYIEFSPTPTDFKNHYPDEKFAIFFLNE 49 (58) Q Consensus 5 iaallirrttgeiewqevyiefsptptdfknhypdekfaifflne 49 (58) +-|..+....+.-.|++.++-|-+++....-.-|+.++-+..-+. T Consensus 21 viay~l~d~~~~~~~~~i~Vi~Na~~~~~~i~Lp~g~w~vl~~~~ 65 (91) T 2wan_A 21 TVAFELKNYANHDTWKNIIVMYNPNKTSQTLNLPSGDWTIVGLGD 65 (91) T ss_dssp CEEEEECSSGGGCSSSCEEEEEECSSSCEEEECCSSCEEEEEETT T ss_pred EEEEEEECCCCCCCCCEEEEEEECCCCCEEEECCCCEEEEEECCC T ss_conf 899999646677899879999958998779977898189986587 No 4 >>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal formation, oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* (A:245-300) Probab=6.83 E-value=2.3e+02 Score=13.11 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=9.4 Q ss_pred HHEECCCCCEEEEE Q ss_conf 01101057424668 Q 537021.9.peg.7 8 LLIRRTTGEIEWQE 21 (58) Q Consensus 8 llirrttgeiewqe 21 (58) .+|.|.+|++.+-| T Consensus 39 ~li~R~~g~v~~~e 52 (56) T 2biw_A 39 ILVPRDGGEIKRIP 52 (56) T ss_dssp EEEETTSCCCEEEE T ss_pred EEECCCCCCEEEEE T ss_conf 99526546146750 No 5 >>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens} (A:317-461) Probab=6.70 E-value=1.8e+02 Score=13.59 Aligned_cols=13 Identities=15% Similarity=0.273 Sum_probs=10.2 Q ss_pred CCCCEEEEEEECH Q ss_conf 9863279999944 Q 537021.9.peg.7 37 YPDEKFAIFFLNE 49 (58) Q Consensus 37 ypdekfaifflne 49 (58) --||||+|.|--+ T Consensus 110 VTEEk~ai~F~t~ 122 (145) T 1yvl_A 110 VTEELHSLSFETQ 122 (145) T ss_dssp CSCCEECEEEEEE T ss_pred HHHHHHHEEEEEE T ss_conf 3344453112234 No 6 >>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, hydrolase; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A* (A:620-718) Probab=6.51 E-value=2.4e+02 Score=12.97 Aligned_cols=44 Identities=11% Similarity=0.238 Sum_probs=34.3 Q ss_pred HHHHEECCCCCEEEEEEEEEECCCCCHHHCCCCCCEEEEEEECH Q ss_conf 20011010574246689999558852010039863279999944 Q 537021.9.peg.7 6 AALLIRRTTGEIEWQEVYIEFSPTPTDFKNHYPDEKFAIFFLNE 49 (58) Q Consensus 6 aallirrttgeiewqevyiefsptptdfknhypdekfaifflne 49 (58) -|..+....+.-.|+++++-|.+++...+-.-|+.++-+..-.+ T Consensus 22 iay~l~d~~~~~~w~~i~Vi~Na~~~~~~i~Lp~g~w~vl~~~~ 65 (99) T 2e8y_A 22 IAYRLYDLDEVDEWKDIIVIHHASPDSVEWRLPNDIPYRLLCDP 65 (99) T ss_dssp EEEEECCCTTTCSSSEEEEEEECSSSEEEEECSSCSCEEEEEET T ss_pred EEEEEECCCCCCCCCEEEEEEECCCCCEEEECCCCCCEEEEEEC T ss_conf 99999778776789859999979999879989989847999848 No 7 >>3kk7_A Putative cell invasion protein with MAC/perforin domain; structural genomics, joint center for structural genomics, JCSG; 2.46A {Bacteroides thetaiotaomicron vpi-5482} (A:43-80,A:176-214,A:341-369) Probab=6.15 E-value=70 Score=15.67 Aligned_cols=13 Identities=62% Similarity=0.848 Sum_probs=9.2 Q ss_pred EECHHHHHHHCCC Q ss_conf 9944665531069 Q 537021.9.peg.7 46 FLNEEGFKQAKND 58 (58) Q Consensus 46 flneegfkqaknd 58 (58) |.-||.|||.-|| T Consensus 86 fileenfkqrynd 98 (106) T 3kk7_A 86 FILEENFKQRYND 98 (106) T ss_dssp GCCCHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 5534448888777 No 8 >>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} (A:182-326) Probab=5.83 E-value=1.8e+02 Score=13.59 Aligned_cols=13 Identities=15% Similarity=0.273 Sum_probs=10.1 Q ss_pred CCCCEEEEEEECH Q ss_conf 9863279999944 Q 537021.9.peg.7 37 YPDEKFAIFFLNE 49 (58) Q Consensus 37 ypdekfaifflne 49 (58) --||||+|.|--+ T Consensus 110 VTEEk~ai~F~t~ 122 (145) T 1bf5_A 110 VTEELHSLSFETQ 122 (145) T ss_dssp CSCCCBCEEEEEE T ss_pred HHHHHHHHHHHHH T ss_conf 8999999988999 No 9 >>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} (A:) Probab=5.72 E-value=1.6e+02 Score=13.82 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=15.1 Q ss_pred HHHHHEECCCCCEEEEEEEEEECC Q ss_conf 320011010574246689999558 Q 537021.9.peg.7 5 IAALLIRRTTGEIEWQEVYIEFSP 28 (58) Q Consensus 5 iaallirrttgeiewqevyiefsp 28 (58) |.||.+.-.-.-+-|.-||||+.. T Consensus 8 IvaliVa~ilAIvVWtIv~IEyrk 31 (36) T 1pi7_A 8 IVALVVAIIIAIVVWSIVIIEGRG 31 (36) T ss_pred HHHHHHHHHHHHHHEEEEEEEECC T ss_conf 999999999998620589998136 No 10 >>2fyq_A Chymotrypsin-like cysteine proteinase; protease, norovirus, calicivirus, viral protein; 1.50A {Norwalk virus} PDB: 2fyr_A 2iph_A* 1wqs_A* (A:) Probab=5.57 E-value=1.6e+02 Score=13.84 Aligned_cols=14 Identities=36% Similarity=0.866 Sum_probs=0.0 Q ss_pred HHHHHHEECCCCCE Q ss_conf 13200110105742 Q 537021.9.peg.7 4 DIAALLIRRTTGEI 17 (58) Q Consensus 4 diaallirrttgei 17 (58) +.+.+||.|.+||. T Consensus 94 tV~silikR~sgel 107 (194) T 2fyq_A 94 TVCSVLIKRDSGEL 107 (194) T ss_dssp CEEEEEEECTTSCE T ss_pred CEEEEEEECCCCCE T ss_conf 27999870589976 Done!