Query         537021.9.peg.759_1
Match_columns 58
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed May 25 00:20:11 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_759.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2bsz_A Arylamine N-acetyltran  19.9      68   0.002   15.7   2.2   13   17-30     28-40  (40)
  2 >3hi2_B Motility quorum-sensin  11.1      89  0.0026   15.1   0.8   11   16-26     67-77  (101)
  3 >2wan_A Pullulanase; hydrolase   7.7 2.1E+02  0.0062   13.3   2.5   45    5-49     21-65  (91)
  4 >2biw_A Apocarotenoid-cleaving   6.8 2.3E+02  0.0067   13.1   1.5   14    8-21     39-52  (56)
  5 >1yvl_A Signal transducer and    6.7 1.8E+02  0.0054   13.6   0.9   13   37-49    110-122 (145)
  6 >2e8y_A AMYX protein, pullulan   6.5 2.4E+02  0.0071   13.0   2.3   44    6-49     22-65  (99)
  7 >3kk7_A Putative cell invasion   6.1      70  0.0021   15.7  -1.4   13   46-58     86-98  (106)
  8 >1bf5_A Signal transducer and    5.8 1.8E+02  0.0054   13.6   0.5   13   37-49    110-122 (145)
  9 >1pi7_A VPU protein, U ORF pro   5.7 1.6E+02  0.0048   13.8   0.3   24    5-28      8-31  (36)
 10 >2fyq_A Chymotrypsin-like cyst   5.6 1.6E+02  0.0048   13.8   0.2   14    4-17     94-107 (194)

No 1  
>>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete proteome; 2.0A {Rhizobium loti} (A:144-183)
Probab=19.95  E-value=68  Score=15.73  Aligned_cols=13  Identities=31%  Similarity=0.945  Sum_probs=9.2

Q ss_pred             EEEEEEEEEECCCC
Q ss_conf             24668999955885
Q 537021.9.peg.7   17 IEWQEVYIEFSPTP   30 (58)
Q Consensus        17 iewqevyiefsptp   30 (58)
                      -+||.+| +|+..|
T Consensus        28 ~~W~~lY-~Fdl~P   40 (40)
T 2bsz_A           28 GDWRSLY-RFDLQP   40 (40)
T ss_dssp             TEEEEEE-EECCCC
T ss_pred             CCCEEEE-EECCCC
T ss_conf             9846999-964514


No 2  
>>3hi2_B Motility quorum-sensing regulator MQSR; toxin-antitoxin system, Zn-binding protein, MQSA, YGIU, YGIT, B3022, B3021, stress response; 2.00A {Escherichia coli k-12} (B:)
Probab=11.11  E-value=89  Score=15.15  Aligned_cols=11  Identities=36%  Similarity=0.661  Sum_probs=7.4

Q ss_pred             CEEEEEEEEEE
Q ss_conf             42466899995
Q 537021.9.peg.7   16 EIEWQEVYIEF   26 (58)
Q Consensus        16 eiewqevyief   26 (58)
                      .-.||.||--.
T Consensus        67 h~iWQDVY~~~   77 (101)
T 3hi2_B           67 HTIWQDVYRPR   77 (101)
T ss_dssp             TTCCEEEECCE
T ss_pred             CCCCCEECCCC
T ss_conf             98202213456


No 3  
>>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus} (A:831-921)
Probab=7.69  E-value=2.1e+02  Score=13.29  Aligned_cols=45  Identities=16%  Similarity=0.392  Sum_probs=36.3

Q ss_pred             HHHHHEECCCCCEEEEEEEEEECCCCCHHHCCCCCCEEEEEEECH
Q ss_conf             320011010574246689999558852010039863279999944
Q 537021.9.peg.7    5 IAALLIRRTTGEIEWQEVYIEFSPTPTDFKNHYPDEKFAIFFLNE   49 (58)
Q Consensus         5 iaallirrttgeiewqevyiefsptptdfknhypdekfaifflne   49 (58)
                      +-|..+....+.-.|++.++-|-+++....-.-|+.++-+..-+.
T Consensus        21 viay~l~d~~~~~~~~~i~Vi~Na~~~~~~i~Lp~g~w~vl~~~~   65 (91)
T 2wan_A           21 TVAFELKNYANHDTWKNIIVMYNPNKTSQTLNLPSGDWTIVGLGD   65 (91)
T ss_dssp             CEEEEECSSGGGCSSSCEEEEEECSSSCEEEECCSSCEEEEEETT
T ss_pred             EEEEEEECCCCCCCCCEEEEEEECCCCCEEEECCCCEEEEEECCC
T ss_conf             899999646677899879999958998779977898189986587


No 4  
>>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal formation, oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* (A:245-300)
Probab=6.83  E-value=2.3e+02  Score=13.11  Aligned_cols=14  Identities=36%  Similarity=0.572  Sum_probs=9.4

Q ss_pred             HHEECCCCCEEEEE
Q ss_conf             01101057424668
Q 537021.9.peg.7    8 LLIRRTTGEIEWQE   21 (58)
Q Consensus         8 llirrttgeiewqe   21 (58)
                      .+|.|.+|++.+-|
T Consensus        39 ~li~R~~g~v~~~e   52 (56)
T 2biw_A           39 ILVPRDGGEIKRIP   52 (56)
T ss_dssp             EEEETTSCCCEEEE
T ss_pred             EEECCCCCCEEEEE
T ss_conf             99526546146750


No 5  
>>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens} (A:317-461)
Probab=6.70  E-value=1.8e+02  Score=13.59  Aligned_cols=13  Identities=15%  Similarity=0.273  Sum_probs=10.2

Q ss_pred             CCCCEEEEEEECH
Q ss_conf             9863279999944
Q 537021.9.peg.7   37 YPDEKFAIFFLNE   49 (58)
Q Consensus        37 ypdekfaifflne   49 (58)
                      --||||+|.|--+
T Consensus       110 VTEEk~ai~F~t~  122 (145)
T 1yvl_A          110 VTEELHSLSFETQ  122 (145)
T ss_dssp             CSCCEECEEEEEE
T ss_pred             HHHHHHHEEEEEE
T ss_conf             3344453112234


No 6  
>>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, hydrolase; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A* (A:620-718)
Probab=6.51  E-value=2.4e+02  Score=12.97  Aligned_cols=44  Identities=11%  Similarity=0.238  Sum_probs=34.3

Q ss_pred             HHHHEECCCCCEEEEEEEEEECCCCCHHHCCCCCCEEEEEEECH
Q ss_conf             20011010574246689999558852010039863279999944
Q 537021.9.peg.7    6 AALLIRRTTGEIEWQEVYIEFSPTPTDFKNHYPDEKFAIFFLNE   49 (58)
Q Consensus         6 aallirrttgeiewqevyiefsptptdfknhypdekfaifflne   49 (58)
                      -|..+....+.-.|+++++-|.+++...+-.-|+.++-+..-.+
T Consensus        22 iay~l~d~~~~~~w~~i~Vi~Na~~~~~~i~Lp~g~w~vl~~~~   65 (99)
T 2e8y_A           22 IAYRLYDLDEVDEWKDIIVIHHASPDSVEWRLPNDIPYRLLCDP   65 (99)
T ss_dssp             EEEEECCCTTTCSSSEEEEEEECSSSEEEEECSSCSCEEEEEET
T ss_pred             EEEEEECCCCCCCCCEEEEEEECCCCCEEEECCCCCCEEEEEEC
T ss_conf             99999778776789859999979999879989989847999848


No 7  
>>3kk7_A Putative cell invasion protein with MAC/perforin domain; structural genomics, joint center for structural genomics, JCSG; 2.46A {Bacteroides thetaiotaomicron vpi-5482} (A:43-80,A:176-214,A:341-369)
Probab=6.15  E-value=70  Score=15.67  Aligned_cols=13  Identities=62%  Similarity=0.848  Sum_probs=9.2

Q ss_pred             EECHHHHHHHCCC
Q ss_conf             9944665531069
Q 537021.9.peg.7   46 FLNEEGFKQAKND   58 (58)
Q Consensus        46 flneegfkqaknd   58 (58)
                      |.-||.|||.-||
T Consensus        86 fileenfkqrynd   98 (106)
T 3kk7_A           86 FILEENFKQRYND   98 (106)
T ss_dssp             GCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
T ss_conf             5534448888777


No 8  
>>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} (A:182-326)
Probab=5.83  E-value=1.8e+02  Score=13.59  Aligned_cols=13  Identities=15%  Similarity=0.273  Sum_probs=10.1

Q ss_pred             CCCCEEEEEEECH
Q ss_conf             9863279999944
Q 537021.9.peg.7   37 YPDEKFAIFFLNE   49 (58)
Q Consensus        37 ypdekfaifflne   49 (58)
                      --||||+|.|--+
T Consensus       110 VTEEk~ai~F~t~  122 (145)
T 1bf5_A          110 VTEELHSLSFETQ  122 (145)
T ss_dssp             CSCCCBCEEEEEE
T ss_pred             HHHHHHHHHHHHH
T ss_conf             8999999988999


No 9  
>>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} (A:)
Probab=5.72  E-value=1.6e+02  Score=13.82  Aligned_cols=24  Identities=29%  Similarity=0.351  Sum_probs=15.1

Q ss_pred             HHHHHEECCCCCEEEEEEEEEECC
Q ss_conf             320011010574246689999558
Q 537021.9.peg.7    5 IAALLIRRTTGEIEWQEVYIEFSP   28 (58)
Q Consensus         5 iaallirrttgeiewqevyiefsp   28 (58)
                      |.||.+.-.-.-+-|.-||||+..
T Consensus         8 IvaliVa~ilAIvVWtIv~IEyrk   31 (36)
T 1pi7_A            8 IVALVVAIIIAIVVWSIVIIEGRG   31 (36)
T ss_pred             HHHHHHHHHHHHHHEEEEEEEECC
T ss_conf             999999999998620589998136


No 10 
>>2fyq_A Chymotrypsin-like cysteine proteinase; protease, norovirus, calicivirus, viral protein; 1.50A {Norwalk virus} PDB: 2fyr_A 2iph_A* 1wqs_A* (A:)
Probab=5.57  E-value=1.6e+02  Score=13.84  Aligned_cols=14  Identities=36%  Similarity=0.866  Sum_probs=0.0

Q ss_pred             HHHHHHEECCCCCE
Q ss_conf             13200110105742
Q 537021.9.peg.7    4 DIAALLIRRTTGEI   17 (58)
Q Consensus         4 diaallirrttgei   17 (58)
                      +.+.+||.|.+||.
T Consensus        94 tV~silikR~sgel  107 (194)
T 2fyq_A           94 TVCSVLIKRDSGEL  107 (194)
T ss_dssp             CEEEEEEECTTSCE
T ss_pred             CEEEEEEECCCCCE
T ss_conf             27999870589976


Done!