Query         537021.9.peg.759_1
Match_columns 58
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 24 23:46:58 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_759.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3hi2_B Motility quorum-sensing  11.2      62  0.0026   15.2   0.8   10   16-25     67-76  (101)
  2 1p7h_L Nuclear factor of activ   8.0 1.4E+02   0.006   13.4   2.3   37    2-47    212-249 (286)
  3 2fyq_A Chymotrypsin-like cyste   5.9 1.1E+02  0.0045   14.0   0.2   20    3-22     93-112 (194)
  4 1irx_A Lysyl-tRNA synthetase;    5.2 1.9E+02  0.0078   12.8   1.0   28    4-34      7-34  (523)
  5 3elg_A Uncharacterized peripla   3.3 2.9E+02   0.012   11.8   0.8   26   18-43     62-96  (128)
  6 1nro_R Receptor based peptide    3.1 2.5E+02    0.01   12.1   0.3   22   30-51      3-24  (27)
  7 2qee_A BH0493 protein; amidohy   3.0 3.2E+02   0.013   11.6   1.2   21   31-51    287-307 (437)
  8 3bp1_A NADPH-dependent 7-cyano   2.9 3.3E+02   0.014   11.5   1.3   21   12-32    198-218 (290)
  9 3c66_C PRE-mRNA polyadenylatio   2.6 2.4E+02    0.01   12.2  -0.2   11   21-31      3-13  (26)
 10 3esi_A Uncharacterized protein   2.5 3.7E+02   0.016   11.3   3.4   30   10-39     10-39  (129)

No 1  
>3hi2_B Motility quorum-sensing regulator MQSR; toxin-antitoxin system, Zn-binding protein, MQSA, YGIU, YGIT, B3022, B3021, stress response; 2.00A {Escherichia coli k-12}
Probab=11.21  E-value=62  Score=15.17  Aligned_cols=10  Identities=40%  Similarity=0.833  Sum_probs=7.2

Q ss_pred             CEEEEEEEEE
Q ss_conf             4246689999
Q 537021.9.peg.7   16 EIEWQEVYIE   25 (58)
Q Consensus        16 eiewqevyie   25 (58)
                      .-.||.||--
T Consensus        67 h~vWQDVY~~   76 (101)
T 3hi2_B           67 HTIWQDVYRP   76 (101)
T ss_dssp             TTCCEEEECC
T ss_pred             CCCCCEECCC
T ss_conf             9820221345


No 2  
>1p7h_L Nuclear factor of activated T-cells, cytoplasmic 2; DNA binding protein, transcription regulation, activator, transcription/DNA complex; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 2o93_L 1a02_N* 1pzu_B 1owr_M 2as5_N 1s9k_C 1nfa_A 1a66_A*
Probab=8.02  E-value=1.4e+02  Score=13.37  Aligned_cols=37  Identities=14%  Similarity=0.285  Sum_probs=21.4

Q ss_pred             CCHHHHHHEECC-CCCEEEEEEEEEECCCCCHHHCCCCCCEEEEEEE
Q ss_conf             201320011010-5742466899995588520100398632799999
Q 537021.9.peg.7    2 AKDIAALLIRRT-TGEIEWQEVYIEFSPTPTDFKNHYPDEKFAIFFL   47 (58)
Q Consensus         2 akdiaallirrt-tgeiewqevyiefsptptdfknhypdekfaiffl   47 (58)
                      .|||-....... .|.+.| |.|.+|+|  .+++      .+||.|-
T Consensus       212 ~Kdi~V~F~e~~~~g~~~W-E~~g~f~~--dv~~------Q~AIvfk  249 (286)
T 1p7h_L          212 TSESKVVFTEKTTDGQQIW-EMEATVDK--DKSQ------PNMLFVE  249 (286)
T ss_dssp             CSSCEEEEEEECSSSCEEE-EEEECBCT--TTCB------TTEEEEE
T ss_pred             CCCCEEEEEEECCCCCCEE-EEEEEECC--CCCE------EEEEEEE
T ss_conf             7887799988789997347-88887361--0107------4489997


No 3  
>2fyq_A Chymotrypsin-like cysteine proteinase; protease, norovirus, calicivirus, viral protein; 1.50A {Norwalk virus} PDB: 2fyr_A 2iph_A* 1wqs_A*
Probab=5.86  E-value=1.1e+02  Score=13.98  Aligned_cols=20  Identities=30%  Similarity=0.489  Sum_probs=13.5

Q ss_pred             CHHHHHHEECCCCCEEEEEE
Q ss_conf             01320011010574246689
Q 537021.9.peg.7    3 KDIAALLIRRTTGEIEWQEV   22 (58)
Q Consensus         3 kdiaallirrttgeiewqev   22 (58)
                      -+.+.+||.|.+||.-=-.|
T Consensus        93 GtV~svlikR~sgel~plav  112 (194)
T 2fyq_A           93 GTVCSVLIKRDSGELLPLAV  112 (194)
T ss_dssp             TCEEEEEEECTTSCEEEEEE
T ss_pred             CCEEEEEEECCCCCEEEEEE
T ss_conf             73799986058997624789


No 4  
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=5.16  E-value=1.9e+02  Score=12.77  Aligned_cols=28  Identities=32%  Similarity=0.459  Sum_probs=16.0

Q ss_pred             HHHHHHEECCCCCEEEEEEEEEECCCCCHHH
Q ss_conf             1320011010574246689999558852010
Q 537021.9.peg.7    4 DIAALLIRRTTGEIEWQEVYIEFSPTPTDFK   34 (58)
Q Consensus         4 diaallirrttgeiewqevyiefsptptdfk   34 (58)
                      .+|.-+++|. |+-  ..+.++++|+||.+-
T Consensus         7 ~~a~~~~~~~-~~~--~~~v~~~g~SPTG~l   34 (523)
T 1irx_A            7 YIADKIIRER-GEK--EKYVVESGITPSGYV   34 (523)
T ss_dssp             HHHHHHHHHS-CCC--SEEEEEEEECCSSCC
T ss_pred             HHHHHHHHHC-CCC--CEEEEEECCCCCCCC
T ss_conf             9999999972-898--739994378899863


No 5  
>3elg_A Uncharacterized periplasmic protein; YP_001299723.1, putative periplasmic protein of unknown function, structural genomics; HET: CIT; 1.64A {Bacteroides vulgatus atcc 8482} SCOP: d.98.2.1
Probab=3.28  E-value=2.9e+02  Score=11.78  Aligned_cols=26  Identities=27%  Similarity=0.525  Sum_probs=15.6

Q ss_pred             EEEEEEEEECCCCCH---------HHCCCCCCEEE
Q ss_conf             466899995588520---------10039863279
Q 537021.9.peg.7   18 EWQEVYIEFSPTPTD---------FKNHYPDEKFA   43 (58)
Q Consensus        18 ewqevyiefsptptd---------fknhypdekfa   43 (58)
                      +|.++--+.++-|+.         ++++||+.+..
T Consensus        62 ~W~~i~~~~~~Ip~~~lP~~V~~~ik~~yp~~~I~   96 (128)
T 3elg_A           62 EWLEIDCKNKSVPSTFIPQAISKYMKANYNGHKTV   96 (128)
T ss_dssp             CEEEEECTTSCCCGGGSCHHHHHHHHHHSTTCCEE
T ss_pred             CEEEEECCCCCCCHHHCCHHHHHHHHHHCCCCCEE
T ss_conf             99997056753774777899999999778998258


No 6  
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=3.08  E-value=2.5e+02  Score=12.13  Aligned_cols=22  Identities=32%  Similarity=0.638  Sum_probs=16.0

Q ss_pred             CCHHHCCCCCCEEEEEEECHHH
Q ss_conf             5201003986327999994466
Q 537021.9.peg.7   30 PTDFKNHYPDEKFAIFFLNEEG   51 (58)
Q Consensus        30 ptdfknhypdekfaifflneeg   51 (58)
                      |..|--.-||.|+.-|+-.||.
T Consensus         3 pr~f~lrnp~dkyepfwedeek   24 (27)
T 1nro_R            3 PRPFLLRNPNDKYEPFWEDEEK   24 (27)
T ss_pred             CCCCCCCCCCCCCCCCCCCHHH
T ss_conf             7541102876656745232211


No 7  
>2qee_A BH0493 protein; amidohydrolase, structural genomics, PSI-2, protein structure initiative; 1.65A {Bacillus halodurans c-125} PDB: 3hka_A* 2q6e_A 3hk5_A* 3hk7_A* 3hk8_A* 3hk9_A* 2q08_A* 2pnk_A*
Probab=3.03  E-value=3.2e+02  Score=11.58  Aligned_cols=21  Identities=29%  Similarity=0.638  Sum_probs=16.9

Q ss_pred             CHHHCCCCCCEEEEEEECHHH
Q ss_conf             201003986327999994466
Q 537021.9.peg.7   31 TDFKNHYPDEKFAIFFLNEEG   51 (58)
Q Consensus        31 tdfknhypdekfaifflneeg   51 (58)
                      .++-|.||+.||-+|.||+.-
T Consensus       287 ~~l~~~~p~~k~il~~Ld~~~  307 (437)
T 2qee_A          287 EHLLREYPNNKFLVTMLSREN  307 (437)
T ss_dssp             HHHHHHCTTSCEEEEESCGGG
T ss_pred             HHHHHHCCCCCEEEEECCCCC
T ss_conf             999853899867999799875


No 8  
>3bp1_A NADPH-dependent 7-cyano-7-deazaguanine reductase; alpha-beta structure, structural genomics, PSI-2; HET: MSE GUN; 1.53A {Vibrio cholerae o1 biovar eltor str}
Probab=2.91  E-value=3.3e+02  Score=11.51  Aligned_cols=21  Identities=19%  Similarity=0.396  Sum_probs=16.6

Q ss_pred             CCCCCEEEEEEEEEECCCCCH
Q ss_conf             105742466899995588520
Q 537021.9.peg.7   12 RTTGEIEWQEVYIEFSPTPTD   32 (58)
Q Consensus        12 rttgeiewqevyiefsptptd   32 (58)
                      ..||.-.|-.+||+++|.+.+
T Consensus       198 PvT~QPD~a~i~I~y~~~~~~  218 (290)
T 3bp1_A          198 LITNQPDWGSVEIAYHGAKMN  218 (290)
T ss_dssp             -----CEEEEEEEEEEEEEEC
T ss_pred             CCCCCCCEEEEEEEECCCCCC
T ss_conf             898998606999998175248


No 9  
>3c66_C PRE-mRNA polyadenylation factor FIP1; peptide-protein complex, mRNA processing, nucleus, RNA- binding, transferase, phosphoprotein; HET: MES; 2.60A {Saccharomyces cerevisiae}
Probab=2.63  E-value=2.4e+02  Score=12.21  Aligned_cols=11  Identities=55%  Similarity=0.927  Sum_probs=0.0

Q ss_pred             EEEEEECCCCC
Q ss_conf             89999558852
Q 537021.9.peg.7   21 EVYIEFSPTPT   31 (58)
Q Consensus        21 evyiefsptpt   31 (58)
                      ||.|...|.||
T Consensus         3 eviislgpdpt   13 (26)
T 3c66_C            3 EVIISLGPDPT   13 (26)
T ss_dssp             CEESCSSSSTT
T ss_pred             EEEEEECCCCC
T ss_conf             79996089920


No 10 
>3esi_A Uncharacterized protein; protein from erwinia carotovora subsp. atroseptica (pectobacterium atrosepticum), structural genomics; 2.50A {Pectobacterium atrosepticum}
Probab=2.53  E-value=3.7e+02  Score=11.26  Aligned_cols=30  Identities=20%  Similarity=0.294  Sum_probs=0.0

Q ss_pred             EECCCCCEEEEEEEEEECCCCCHHHCCCCC
Q ss_conf             101057424668999955885201003986
Q 537021.9.peg.7   10 IRRTTGEIEWQEVYIEFSPTPTDFKNHYPD   39 (58)
Q Consensus        10 irrttgeiewqevyiefsptptdfknhypd   39 (58)
                      +.+.+.|-.-.+..+.++|.--=|+.|+|+
T Consensus        10 ~~~~~~~~~~~~~~l~v~~d~~~f~gHFP~   39 (129)
T 3esi_A           10 DVKKTDETSQVELMLQVDPDLFWFNGHFTG   39 (129)
T ss_dssp             CCCCCSSEEEEEEEEECCTTSGGGCTTTBS
T ss_pred             EEEECCCCCEEEEEEECCCCCCEECCCCCC
T ss_conf             343037775699999808998744878989


Done!