Query 537021.9.peg.759_1 Match_columns 58 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 24 23:46:58 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_759.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3hi2_B Motility quorum-sensing 11.2 62 0.0026 15.2 0.8 10 16-25 67-76 (101) 2 1p7h_L Nuclear factor of activ 8.0 1.4E+02 0.006 13.4 2.3 37 2-47 212-249 (286) 3 2fyq_A Chymotrypsin-like cyste 5.9 1.1E+02 0.0045 14.0 0.2 20 3-22 93-112 (194) 4 1irx_A Lysyl-tRNA synthetase; 5.2 1.9E+02 0.0078 12.8 1.0 28 4-34 7-34 (523) 5 3elg_A Uncharacterized peripla 3.3 2.9E+02 0.012 11.8 0.8 26 18-43 62-96 (128) 6 1nro_R Receptor based peptide 3.1 2.5E+02 0.01 12.1 0.3 22 30-51 3-24 (27) 7 2qee_A BH0493 protein; amidohy 3.0 3.2E+02 0.013 11.6 1.2 21 31-51 287-307 (437) 8 3bp1_A NADPH-dependent 7-cyano 2.9 3.3E+02 0.014 11.5 1.3 21 12-32 198-218 (290) 9 3c66_C PRE-mRNA polyadenylatio 2.6 2.4E+02 0.01 12.2 -0.2 11 21-31 3-13 (26) 10 3esi_A Uncharacterized protein 2.5 3.7E+02 0.016 11.3 3.4 30 10-39 10-39 (129) No 1 >3hi2_B Motility quorum-sensing regulator MQSR; toxin-antitoxin system, Zn-binding protein, MQSA, YGIU, YGIT, B3022, B3021, stress response; 2.00A {Escherichia coli k-12} Probab=11.21 E-value=62 Score=15.17 Aligned_cols=10 Identities=40% Similarity=0.833 Sum_probs=7.2 Q ss_pred CEEEEEEEEE Q ss_conf 4246689999 Q 537021.9.peg.7 16 EIEWQEVYIE 25 (58) Q Consensus 16 eiewqevyie 25 (58) .-.||.||-- T Consensus 67 h~vWQDVY~~ 76 (101) T 3hi2_B 67 HTIWQDVYRP 76 (101) T ss_dssp TTCCEEEECC T ss_pred CCCCCEECCC T ss_conf 9820221345 No 2 >1p7h_L Nuclear factor of activated T-cells, cytoplasmic 2; DNA binding protein, transcription regulation, activator, transcription/DNA complex; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 2o93_L 1a02_N* 1pzu_B 1owr_M 2as5_N 1s9k_C 1nfa_A 1a66_A* Probab=8.02 E-value=1.4e+02 Score=13.37 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=21.4 Q ss_pred CCHHHHHHEECC-CCCEEEEEEEEEECCCCCHHHCCCCCCEEEEEEE Q ss_conf 201320011010-5742466899995588520100398632799999 Q 537021.9.peg.7 2 AKDIAALLIRRT-TGEIEWQEVYIEFSPTPTDFKNHYPDEKFAIFFL 47 (58) Q Consensus 2 akdiaallirrt-tgeiewqevyiefsptptdfknhypdekfaiffl 47 (58) .|||-....... .|.+.| |.|.+|+| .+++ .+||.|- T Consensus 212 ~Kdi~V~F~e~~~~g~~~W-E~~g~f~~--dv~~------Q~AIvfk 249 (286) T 1p7h_L 212 TSESKVVFTEKTTDGQQIW-EMEATVDK--DKSQ------PNMLFVE 249 (286) T ss_dssp CSSCEEEEEEECSSSCEEE-EEEECBCT--TTCB------TTEEEEE T ss_pred CCCCEEEEEEECCCCCCEE-EEEEEECC--CCCE------EEEEEEE T ss_conf 7887799988789997347-88887361--0107------4489997 No 3 >2fyq_A Chymotrypsin-like cysteine proteinase; protease, norovirus, calicivirus, viral protein; 1.50A {Norwalk virus} PDB: 2fyr_A 2iph_A* 1wqs_A* Probab=5.86 E-value=1.1e+02 Score=13.98 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=13.5 Q ss_pred CHHHHHHEECCCCCEEEEEE Q ss_conf 01320011010574246689 Q 537021.9.peg.7 3 KDIAALLIRRTTGEIEWQEV 22 (58) Q Consensus 3 kdiaallirrttgeiewqev 22 (58) -+.+.+||.|.+||.-=-.| T Consensus 93 GtV~svlikR~sgel~plav 112 (194) T 2fyq_A 93 GTVCSVLIKRDSGELLPLAV 112 (194) T ss_dssp TCEEEEEEECTTSCEEEEEE T ss_pred CCEEEEEEECCCCCEEEEEE T ss_conf 73799986058997624789 No 4 >1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Probab=5.16 E-value=1.9e+02 Score=12.77 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=16.0 Q ss_pred HHHHHHEECCCCCEEEEEEEEEECCCCCHHH Q ss_conf 1320011010574246689999558852010 Q 537021.9.peg.7 4 DIAALLIRRTTGEIEWQEVYIEFSPTPTDFK 34 (58) Q Consensus 4 diaallirrttgeiewqevyiefsptptdfk 34 (58) .+|.-+++|. |+- ..+.++++|+||.+- T Consensus 7 ~~a~~~~~~~-~~~--~~~v~~~g~SPTG~l 34 (523) T 1irx_A 7 YIADKIIRER-GEK--EKYVVESGITPSGYV 34 (523) T ss_dssp HHHHHHHHHS-CCC--SEEEEEEEECCSSCC T ss_pred HHHHHHHHHC-CCC--CEEEEEECCCCCCCC T ss_conf 9999999972-898--739994378899863 No 5 >3elg_A Uncharacterized periplasmic protein; YP_001299723.1, putative periplasmic protein of unknown function, structural genomics; HET: CIT; 1.64A {Bacteroides vulgatus atcc 8482} SCOP: d.98.2.1 Probab=3.28 E-value=2.9e+02 Score=11.78 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=15.6 Q ss_pred EEEEEEEEECCCCCH---------HHCCCCCCEEE Q ss_conf 466899995588520---------10039863279 Q 537021.9.peg.7 18 EWQEVYIEFSPTPTD---------FKNHYPDEKFA 43 (58) Q Consensus 18 ewqevyiefsptptd---------fknhypdekfa 43 (58) +|.++--+.++-|+. ++++||+.+.. T Consensus 62 ~W~~i~~~~~~Ip~~~lP~~V~~~ik~~yp~~~I~ 96 (128) T 3elg_A 62 EWLEIDCKNKSVPSTFIPQAISKYMKANYNGHKTV 96 (128) T ss_dssp CEEEEECTTSCCCGGGSCHHHHHHHHHHSTTCCEE T ss_pred CEEEEECCCCCCCHHHCCHHHHHHHHHHCCCCCEE T ss_conf 99997056753774777899999999778998258 No 6 >1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens} Probab=3.08 E-value=2.5e+02 Score=12.13 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=16.0 Q ss_pred CCHHHCCCCCCEEEEEEECHHH Q ss_conf 5201003986327999994466 Q 537021.9.peg.7 30 PTDFKNHYPDEKFAIFFLNEEG 51 (58) Q Consensus 30 ptdfknhypdekfaifflneeg 51 (58) |..|--.-||.|+.-|+-.||. T Consensus 3 pr~f~lrnp~dkyepfwedeek 24 (27) T 1nro_R 3 PRPFLLRNPNDKYEPFWEDEEK 24 (27) T ss_pred CCCCCCCCCCCCCCCCCCCHHH T ss_conf 7541102876656745232211 No 7 >2qee_A BH0493 protein; amidohydrolase, structural genomics, PSI-2, protein structure initiative; 1.65A {Bacillus halodurans c-125} PDB: 3hka_A* 2q6e_A 3hk5_A* 3hk7_A* 3hk8_A* 3hk9_A* 2q08_A* 2pnk_A* Probab=3.03 E-value=3.2e+02 Score=11.58 Aligned_cols=21 Identities=29% Similarity=0.638 Sum_probs=16.9 Q ss_pred CHHHCCCCCCEEEEEEECHHH Q ss_conf 201003986327999994466 Q 537021.9.peg.7 31 TDFKNHYPDEKFAIFFLNEEG 51 (58) Q Consensus 31 tdfknhypdekfaifflneeg 51 (58) .++-|.||+.||-+|.||+.- T Consensus 287 ~~l~~~~p~~k~il~~Ld~~~ 307 (437) T 2qee_A 287 EHLLREYPNNKFLVTMLSREN 307 (437) T ss_dssp HHHHHHCTTSCEEEEESCGGG T ss_pred HHHHHHCCCCCEEEEECCCCC T ss_conf 999853899867999799875 No 8 >3bp1_A NADPH-dependent 7-cyano-7-deazaguanine reductase; alpha-beta structure, structural genomics, PSI-2; HET: MSE GUN; 1.53A {Vibrio cholerae o1 biovar eltor str} Probab=2.91 E-value=3.3e+02 Score=11.51 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=16.6 Q ss_pred CCCCCEEEEEEEEEECCCCCH Q ss_conf 105742466899995588520 Q 537021.9.peg.7 12 RTTGEIEWQEVYIEFSPTPTD 32 (58) Q Consensus 12 rttgeiewqevyiefsptptd 32 (58) ..||.-.|-.+||+++|.+.+ T Consensus 198 PvT~QPD~a~i~I~y~~~~~~ 218 (290) T 3bp1_A 198 LITNQPDWGSVEIAYHGAKMN 218 (290) T ss_dssp -----CEEEEEEEEEEEEEEC T ss_pred CCCCCCCEEEEEEEECCCCCC T ss_conf 898998606999998175248 No 9 >3c66_C PRE-mRNA polyadenylation factor FIP1; peptide-protein complex, mRNA processing, nucleus, RNA- binding, transferase, phosphoprotein; HET: MES; 2.60A {Saccharomyces cerevisiae} Probab=2.63 E-value=2.4e+02 Score=12.21 Aligned_cols=11 Identities=55% Similarity=0.927 Sum_probs=0.0 Q ss_pred EEEEEECCCCC Q ss_conf 89999558852 Q 537021.9.peg.7 21 EVYIEFSPTPT 31 (58) Q Consensus 21 evyiefsptpt 31 (58) ||.|...|.|| T Consensus 3 eviislgpdpt 13 (26) T 3c66_C 3 EVIISLGPDPT 13 (26) T ss_dssp CEESCSSSSTT T ss_pred EEEEEECCCCC T ss_conf 79996089920 No 10 >3esi_A Uncharacterized protein; protein from erwinia carotovora subsp. atroseptica (pectobacterium atrosepticum), structural genomics; 2.50A {Pectobacterium atrosepticum} Probab=2.53 E-value=3.7e+02 Score=11.26 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=0.0 Q ss_pred EECCCCCEEEEEEEEEECCCCCHHHCCCCC Q ss_conf 101057424668999955885201003986 Q 537021.9.peg.7 10 IRRTTGEIEWQEVYIEFSPTPTDFKNHYPD 39 (58) Q Consensus 10 irrttgeiewqevyiefsptptdfknhypd 39 (58) +.+.+.|-.-.+..+.++|.--=|+.|+|+ T Consensus 10 ~~~~~~~~~~~~~~l~v~~d~~~f~gHFP~ 39 (129) T 3esi_A 10 DVKKTDETSQVELMLQVDPDLFWFNGHFTG 39 (129) T ss_dssp CCCCCSSEEEEEEEEECCTTSGGGCTTTBS T ss_pred EEEECCCCCEEEEEEECCCCCCEECCCCCC T ss_conf 343037775699999808998744878989 Done!