RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= 537021.9.peg.759_1 (58 letters) >gnl|CDD|38907 KOG3703, KOG3703, KOG3703, Heparan sulfate N-deacetylase/N-sulfotransferase [Posttranslational modification, protein turnover, chaperones]. Length = 873 Score = 28.8 bits (64), Expect = 0.32 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Query: 17 IEWQEVYIEFSPTPTDFKNHYPDEKFAIFFLNEEGFKQA 55 I+W Y++F P P++ + EK A +F +E K+A Sbjct: 646 IDW---YMDFFPVPSNTTTDFLFEKSATYFDSEVAPKRA 681 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.319 0.137 0.411 Gapped Lambda K H 0.267 0.0570 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 779,610 Number of extensions: 31292 Number of successful extensions: 66 Number of sequences better than 10.0: 1 Number of HSP's gapped: 66 Number of HSP's successfully gapped: 1 Length of query: 58 Length of database: 6,263,737 Length adjustment: 30 Effective length of query: 28 Effective length of database: 5,615,467 Effective search space: 157233076 Effective search space used: 157233076 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (23.8 bits)