RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.759_1
         (58 letters)



>gnl|CDD|38907 KOG3703, KOG3703, KOG3703, Heparan sulfate
           N-deacetylase/N-sulfotransferase [Posttranslational
           modification, protein turnover, chaperones].
          Length = 873

 Score = 28.8 bits (64), Expect = 0.32
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 17  IEWQEVYIEFSPTPTDFKNHYPDEKFAIFFLNEEGFKQA 55
           I+W   Y++F P P++    +  EK A +F +E   K+A
Sbjct: 646 IDW---YMDFFPVPSNTTTDFLFEKSATYFDSEVAPKRA 681


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0570    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 779,610
Number of extensions: 31292
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 1
Length of query: 58
Length of database: 6,263,737
Length adjustment: 30
Effective length of query: 28
Effective length of database: 5,615,467
Effective search space: 157233076
Effective search space used: 157233076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)