BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.759_1
         (58 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.759_1 
          Length = 58

 Score =  122 bits (305), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 58/58 (100%), Positives = 58/58 (100%)

Query: 1  MAKDIAALLIRRTTGEIEWQEVYIEFSPTPTDFKNHYPDEKFAIFFLNEEGFKQAKND 58
          MAKDIAALLIRRTTGEIEWQEVYIEFSPTPTDFKNHYPDEKFAIFFLNEEGFKQAKND
Sbjct: 1  MAKDIAALLIRRTTGEIEWQEVYIEFSPTPTDFKNHYPDEKFAIFFLNEEGFKQAKND 58


>gi|254780536|ref|YP_003064949.1| acyl-carrier-protein S-malonyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 314

 Score = 23.5 bits (49), Expect = 0.63,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 4   DIAALLIRRTTGEIEWQEVYIEFS 27
           +I+ LL+ + TG + W+E    F+
Sbjct: 244 EISRLLVEQVTGRVRWRETIQWFA 267


>gi|254780757|ref|YP_003065170.1| glycyl-tRNA synthetase subunit alpha [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 307

 Score = 21.6 bits (44), Expect = 3.0,   Method: Composition-based stats.
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 12 RTTGEIEWQEVYIEFSPTPTD 32
          R  G + W+  Y++ S  P D
Sbjct: 51 RALGPLSWKAAYVQPSRRPLD 71


>gi|254780306|ref|YP_003064719.1| DNA topoisomerase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 837

 Score = 21.2 bits (43), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 13  TTGEIEWQEVYIEF 26
           +TG++ W+EV  EF
Sbjct: 548 STGKLNWKEVLHEF 561


>gi|254780608|ref|YP_003065021.1| ribosomal large subunit pseudouridine synthase C [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 346

 Score = 20.8 bits (42), Expect = 4.1,   Method: Composition-based stats.
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 33 FKNHYPDEKF 42
          FKNHYP   F
Sbjct: 25 FKNHYPHINF 34


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.137    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,188
Number of Sequences: 1233
Number of extensions: 1266
Number of successful extensions: 5
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 58
length of database: 328,796
effective HSP length: 30
effective length of query: 28
effective length of database: 291,806
effective search space:  8170568
effective search space used:  8170568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 31 (16.5 bits)