>TIGR03434 ADOP Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.

Probab=99.27 E-value=8.5e-11 Score=80.45 Aligned_cols=212 Identities=14% Similarity=0.134 Sum_probs=105.7 Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCC--CEEECCC------CCCC Q ss_conf 999999875225545468999999999999999999999999876999996311102-453--0000000------0012 Q 537021.9.peg.7 8 EVIVAWRYLFSNRKNAFISIASFISFIGVMIGVMALIVVMSVMNGFREDMIKRVLGI-NGH--VVIQQKY------YPLV 78 (270) Q Consensus 8 ~~~iA~R~l~~~k~r~~~~~is~ls~lgI~igv~~li~~lsv~~G~~~~i~~~i~~~-~~~--i~i~~~~------~~~~ 78 (270) T Consensus 4 dlK~A~R~L~k~k~~s~------inI~gLalGi~~~~~if~~v~~~---~~~-~l~y~~~dri~~v~~~~~~~~~~~~~~ 73 (803) T TIGR03434 4 DLRYALRTLRRSPGFTA------VAVLTLALGIGANTAIFSVVNAV---LLR-PLPYPDPDRLVALWERGPGAGSPGGNF 73 (803) T ss_pred HHHHHHHHHHHCHHHHH------HHHHHHHHHHHHHHHHHHHHHHH---HCC-CCCCCCCCEEEEEEEECCCCCCCCCCC T ss_conf 89999999987748899------99999999999999999999999---556-889898451899998778888788888 Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC----CCCCCCCCCCHH Q ss_conf 1366655542264103466542001111122233221011124310000012001100277542----111123421013 Q 537021.9.peg.7 79 DYQFIANRLDFIPDVIKVLPFVSGQAFVSGLSSGGSGVLVRGISNSDFSYLQNSFSRFYGNVSN----DFDRGKGVIIGK 154 (270) Q Consensus 79 ~~~~~~~~l~~~~~V~~~~p~i~~~~~i~~~~~~~~~v~i~Gv~~~~~~~~~~~~~~~~~~~~~----~~~~~~~iiiG~ 154 (270) T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vd~~fF~~f~~~--~l~Gr~~~~~~~~~~~~~~vvlS~ 150 (803) T TIGR03434 74 SYPDYEDWRAQNRSFSSLAAYSGASFNLTG-GGEPERVRGALVSANFFPVLGVQ--PALGRLFTPEDDRPGAPPVVVLSY 150 (803) T ss_pred CHHHHHHHHHHCHHHHHHHEEECCEEEECC-CCCCEEEEEEEECCCHHHHCCCC--CCCCCCCCCCHHCCCCCCEEEECH T ss_conf 978999999846167776704132058606-88744877899985369775986--025888895001369999899829 Q ss_pred HHHHHH-H-CC--CCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC-CCCEEEEEHHHHHHHCCCCC---CEEE Q ss_conf 454554-2-13--332023113442100012211000012210233102445-55168985488999718998---7107 Q 537021.9.peg.7 155 DLARNL-G-IS--IGDKINILSPYGDVTPMGMGIRSKSYTVLGMFRMRFPDY-DNGMVYMSLQEAQLYFNLEN---AVSG 226 (270) Q Consensus 155 ~lA~~L-~-l~--vGD~i~l~~~~~~~~~~~~~~~~~~f~V~GI~~sg~~~~-D~~~v~~~l~~~q~l~~~~~---~~~~ 226 (270) T Consensus 151 ~~a~k~Fg~d~~~iGkti~~--------------~~~~~~V~GV~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 216 (803) T TIGR03434 151 ALWQRRFGGDPAVVGRTIRL--------------NGRPYTVVGVMPPGFRFPGRDPDVWVPLAMDPALLAGADRGSHWLR 216 (803) T ss_pred HHHHHHHCCCCCCCCCEEEE--------------CCEEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEE T ss_conf 99999838992004887999--------------9977899999779878889885499987444100245788870289 Q ss_pred EEEEECCHHHHHHHHHHHHH Q ss_conf 99995698899999999998 Q 537021.9.peg.7 227 IEVFVKDPDAIEKTHENIVR 246 (270) Q Consensus 227 i~i~l~d~~~~~~~~~~i~~ 246 (270) T Consensus 217 ~~~~L~~g~~~~~~~~~l~~ 236 (803) T TIGR03434 217 VIGRLKPGVTLAQAQAELDA 236 (803) T ss_pred EEEEECCCCCHHHHHHHHHH T ss_conf 99996899999999999999

HHsearch alignment for GI: peg_788 and conserved domain: TIGR03434