HHsearch alignment of GI: peg_788 and MMDB domain: 3is6_A_

>3is6_A (A:) Putative permease protein, ABC transporter; domain, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.95A {Porphyromonas gingivalis W83}
Probab=99.31  E-value=2e-13  Score=94.96  Aligned_cols=164  Identities=11%  Similarity=-0.023  Sum_probs=117.4

Q ss_pred             CCHHHHHHHHHCCCCHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             21366655542264103466542001111-12223322101112431000001200110027754211112342101345
Q 537021.9.peg.7   78 VDYQFIANRLDFIPDVIKVLPFVSGQAFV-SGLSSGGSGVLVRGISNSDFSYLQNSFSRFYGNVSNDFDRGKGVIIGKDL  156 (270)
Q Consensus        78 ~~~~~~~~~l~~~~~V~~~~p~i~~~~~i-~~~~~~~~~v~i~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiG~~l  156 (270)
                      ..++.+.+.+++.|+|+.++|+....+-. ...++....+.+.|++|++++....  ....|+.....+..+.|+||+.+
T Consensus        39 ~~~~~~~~l~~~~p~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~Gr~~~~~d~~~~vvi~~~~  116 (244)
T 3is6_A           39 VSGGVAPAIQEEIPGVELATRTTLYGTSKXILEDNKTYETKTLLAEPAFLDXFGV--ELIAGVRDSALRDNXTCLISESL  116 (244)
T ss_dssp             BCTTHHHHHHHHCTTEEEEEEEEEEEEEEEEETTTEEEEEEEEEECTHHHHHTTC--CEEEECGGGTTCSTTEEEEEHHH
T ss_pred             CCHHHHHHHHHHCHHHHEEEEEEECCCCEEEECCCEEEEEEEEEECHHHHHHCCC--CEEECCCCHHHCCCCEEEECHHH
T ss_conf             6577999999878223203677304761377548757750069989528977597--25605811454389989989999


Q ss_pred             HHHH-HCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECC-CCCCCEEEEEHHHHHHHCC---CCCCEEEEEEEE
Q ss_conf             4554-2133320231134421000122110000122102331024-4555168985488999718---998710799995
Q 537021.9.peg.7  157 ARNL-GISIGDKINILSPYGDVTPMGMGIRSKSYTVLGMFRMRFP-DYDNGMVYMSLQEAQLYFN---LENAVSGIEVFV  231 (270)
Q Consensus       157 A~~L-~l~vGD~i~l~~~~~~~~~~~~~~~~~~f~V~GI~~sg~~-~~D~~~v~~~l~~~q~l~~---~~~~~~~i~i~l  231 (270)
                      |+++ +..+|++|.+..+.+          .+.|+|+||++.... ...+..+++|+.+.+..+.   ..+..+.+.+++
T Consensus       117 A~~~f~~~iG~~i~~~~~~~----------~~~~~VvGV~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~i~v~~  186 (244)
T 3is6_A          117 ARKXGGDVLGKRLRPAESKS----------DRAITIGGVFEDLPHNSSIQADXLLPITWXPAESLNNWIGNDRYIAYVRL  186 (244)
T ss_dssp             HHHTTSCCTTCEEEETTCCS----------SCCEEEEEEECCCCSSBSCCCSEEEEGGGSCHHHHTCCSSCCCBEEEEEE
T ss_pred             HHHHCCCCCCCEEEECCCCC----------CCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf             99853655577798623578----------87419999947897567665339997523232245776678746999996


Q ss_pred             CCHHHHHHHHHHHHHHCCCCEE
Q ss_conf             6988999999999986199859
Q 537021.9.peg.7  232 KDPDAIEKTHENIVRILGNGVV  253 (270)
Q Consensus       232 ~d~~~~~~~~~~i~~~l~~~~~  253 (270)
                      ++..+.+++.++|++.+...+.
T Consensus       187 ~~~~~~~~~~~~i~~~l~~~~~  208 (244)
T 3is6_A          187 RPGVSPESLDEALLEXQKRHQD  208 (244)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHCC
T ss_conf             8999999999999999988446