HHsearch results for GI: peg_788 and protein with PDBid: 3is6_A
>3is6_A Putative permease protein, ABC transporter; domain, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.95A {Porphyromonas gingivalis W83}
Probab=97.60 E-value=5.3e-05 Score=46.38 Aligned_cols=149 Identities=11% Similarity=0.032 Sum_probs=83.1
Q ss_pred HHCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHH-HCCC
Q ss_conf 4226410346654200-1111122233221011124310000012001100277542111123421013454554-2133
Q 537021.9.peg.7 87 LDFIPDVIKVLPFVSG-QAFVSGLSSGGSGVLVRGISNSDFSYLQNSFSRFYGNVSNDFDRGKGVIIGKDLARNL-GISI 164 (270)
Q Consensus 87 l~~~~~V~~~~p~i~~-~~~i~~~~~~~~~v~i~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiG~~lA~~L-~l~v 164 (270)
.+..|+|+.++.+... .......++......+..+|+++++.+... ...|+........+.|+|++.+|++| +=.+
T Consensus 48 ~~~~P~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~ff~~f~~~--~l~G~~~~~l~~~~~vvIse~~A~klFgd~i 125 (244)
T 3is6_A 48 QEEIPGVELATRTTLYGTSKMILEDNKTYETKTLLAEPAFLDMFGVE--LIAGVRDSALRDNMTCLISESLARKMGGDVL 125 (244)
T ss_dssp HHHCTTEEEEEEEEEEEEEEEEETTTEEEEEEEEEECTHHHHHTTCC--EEEECGGGTTCSTTEEEEEHHHHHHTTSCCT
T ss_pred HHHCHHHHEEEEEEECCCCEEEECCCEEEEEEEEEECHHHHHHCCCC--EECCCHHHHHCCCCEEEECHHHHHHHCCCCC
T ss_conf 98690452999999728713897188777741799898599764985--3347842564389989984899997528745
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE--ECCCCCCCEEEEEHHHHHHHCCC---CCCEEEEEEEECCHHHHHH
Q ss_conf 320231134421000122110000122102331--02445551689854889997189---9871079999569889999
Q 537021.9.peg.7 165 GDKINILSPYGDVTPMGMGIRSKSYTVLGMFRM--RFPDYDNGMVYMSLQEAQLYFNL---ENAVSGIEVFVKDPDAIEK 239 (270)
Q Consensus 165 GD~i~l~~~~~~~~~~~~~~~~~~f~V~GI~~s--g~~~~D~~~v~~~l~~~q~l~~~---~~~~~~i~i~l~d~~~~~~ 239 (270)
|.++.+.... ..+.|+|+||++- ..+.+... +++|+......... .+......|+++++.+.+.
T Consensus 126 Gk~l~~~~~~----------~~~~~~V~GV~~d~p~nS~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~ 194 (244)
T 3is6_A 126 GKRLRPAESK----------SDRAITIGGVFEDLPHNSSIQAD-MLLPITWMPAESLNNWIGNDRYIAYVRLRPGVSPES 194 (244)
T ss_dssp TCEEEETTCC----------SSCCEEEEEEECCCCSSBSCCCS-EEEEGGGSCHHHHTCCSSCCCBEEEEEECTTCCGGG
T ss_pred CCEEEEECCC----------CCCEEEEEEEECCCCCCCCCCEE-EEEECCCCCHHCCCCCCCCCCEEEEEEECCCCCHHH
T ss_conf 6889850168----------98648999996899766766444-999863321101688777873789999999999999
Q ss_pred HHHHHHHHC
Q ss_conf 999999861
Q 537021.9.peg.7 240 THENIVRIL 248 (270)
Q Consensus 240 ~~~~i~~~l 248 (270)
+.++|++.+
T Consensus 195 ~~~~l~~~~ 203 (244)
T 3is6_A 195 LDEALLEMQ 203 (244)
T ss_dssp GHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999