RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 537021.9.peg.788_1
(270 letters)
>d1e32a1 b.52.2.3 (A:21-106) Membrane fusion ATPase p97 N-terminal
domain , P97-Nn {Mouse (Mus musculus) [TaxId: 10090]}
Length = 86
Score = 28.6 bits (64), Expect = 0.58
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 140 VSNDFDRGKGVI-IGKDLARNLGISIGDKINI 170
V +D I + + + NL + +GD I+I
Sbjct: 51 VLSDDTCSDEKIRMNRVVRNNLRVRLGDVISI 82
>d1cz5a1 b.52.2.3 (A:1-91) N-terminal domain of VAT-N, VAT-Nn
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 91
Score = 28.2 bits (63), Expect = 0.81
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 140 VSNDFDRGKGVI-IGKDLARNLGISIGDKINI 170
+ D KG++ I + N G SIGDK+ +
Sbjct: 56 RARPEDENKGIVRIDSVMRNNCGASIGDKVKV 87
>d1ylea1 d.108.1.8 (A:1-338) Arginine N-succinyltransferase, alpha
chain, AstA {Pseudomonas aeruginosa [TaxId: 287]}
Length = 338
Score = 28.1 bits (63), Expect = 0.82
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 143 DFDRGKGVIIGKDLARNLGISIGDKINILS 172
D+ GK V + + A LG+ G + +++
Sbjct: 308 DWAPGKPVALSVEAAEALGVGEGASVRLVA 337
>g1gk9.1 d.153.1.2 (A:,B:) Penicillin acylase {Escherichia coli
[TaxId: 562]}
Length = 765
Score = 28.1 bits (61), Expect = 0.90
Identities = 6/53 (11%), Positives = 14/53 (26%), Gaps = 3/53 (5%)
Query: 99 FVSGQAFVSGLSSGGSGVLVRGI---SNSDFSYLQNSFSRFYGNVSNDFDRGK 148
V ++ VL + S F + + Y + ++
Sbjct: 688 GTENDMIVFSPTTSDRPVLAWDVVAPGQSGFIAPDGTVDKHYEDQLKMYENFG 740
>d1ddfa_ a.77.1.2 (A:) Fas {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 28.0 bits (62), Expect = 0.99
Identities = 8/64 (12%), Positives = 18/64 (28%), Gaps = 7/64 (10%)
Query: 154 KDLARNLGISIGDKINILSPYGDVTPMGMGIRSKSYTVLGMFRMRFPDYDN-GMVYMSLQ 212
K R G++ I + + +L + + + L+
Sbjct: 30 KGFVRKNGVNEAKIDEIKNDNVQ------DTAEQKVQLLRNWHQLHGKKEAYDTLIKDLK 83
Query: 213 EAQL 216
+A L
Sbjct: 84 KANL 87
>d1icha_ a.77.1.2 (A:) Tumor necrosis factor receptor-1 death domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 27.5 bits (61), Expect = 1.1
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 154 KDLARNLGISIGDKINILSPYGDVTPMGMGIRSKSYTVLGMFRMRFPDYDN 204
K+ + LG+S + + G +R Y++L +R R P +
Sbjct: 17 KEFVKRLGLSDHEIDRLELQNGR------CLREAQYSMLATWRRRTPRREA 61
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase
subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 538
Score = 27.5 bits (61), Expect = 1.4
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 22 NAFISIASFISFIGVMIGVMALIVVMSVMNG 52
N S+ +F+SF + ++ ++ G
Sbjct: 481 NFVSSLGAFLSFASFLF--FLGVIFYTLTRG 509
>g1cp9.1 d.153.1.2 (A:,B:) Penicillin acylase {Providencia rettgeri
[TaxId: 587]}
Length = 750
Score = 27.3 bits (59), Expect = 1.4
Identities = 14/82 (17%), Positives = 22/82 (26%), Gaps = 8/82 (9%)
Query: 75 YPLVDYQFIANRLDFIPDVIKVLPFVSGQAFVSGLSS-----GGSGVLVRGI---SNSDF 126
P F N IP + F + G + GV + S F
Sbjct: 644 TPATALTFRENNFFGIPQALPQENFHQNEYHNRGTENDLIVFTEEGVSAWDVVAPGQSGF 703
Query: 127 SYLQNSFSRFYGNVSNDFDRGK 148
Q S Y + + + +
Sbjct: 704 ISPQGKPSPHYQDQLSLYQQFG 725
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase
subunit I {Thermus thermophilus [TaxId: 274]}
Length = 549
Score = 26.9 bits (59), Expect = 1.9
Identities = 4/40 (10%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 15 YLFSNRKNAFISIASFISFIGVMIGVMALIVVMSVMNGFR 54
Y + F +A + + +++ + +++ R
Sbjct: 447 YPHAAVPMVFNVLAGIVLLVALLL--FIYGLFSVLLSRER 484
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I
{Cow (Bos taurus) [TaxId: 9913]}
Length = 514
Score = 26.3 bits (58), Expect = 3.2
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 22 NAFISIASFISFIGVMIGVMALIVVMSVMNG 52
N S+ SFIS VM+ M I+ + +
Sbjct: 451 NTISSMGSFISLTAVML--MVFIIWEAFASK 479
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I
{Escherichia coli [TaxId: 562]}
Length = 501
Score = 26.1 bits (57), Expect = 3.3
Identities = 2/33 (6%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 22 NAFISIASFISFIGVMIGVMALIVVMSVMNGFR 54
+ + + +G++ + + + +S+ + +
Sbjct: 444 LMIAASGAVLIALGILC--LVIQMYVSIRDRDQ 474
>d2f1ka1 a.100.1.12 (A:166-279) Prephenate dehydrogenase TyrA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 114
Score = 25.7 bits (56), Expect = 4.6
Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 104 AFVSGLSSGGSGVLVRGISNSDFSYLQNSFSRFYGNVSNDFDRGKGVIIGKDLARNLGIS 163
A++S L S L++ + + + D R + G + ++
Sbjct: 10 AWISHLPVMVSAALIQACAGEKDGDILKLAQNLASSGFRDTSR----VGGGNPELGTMMA 65
Query: 164 IGDKINIL 171
++ +L
Sbjct: 66 TYNQRALL 73
>d1mvfd_ b.129.1.1 (D:) MazE {Escherichia coli [TaxId: 562]}
Length = 44
Score = 25.3 bits (56), Expect = 5.3
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 148 KGVIIGKDLARNLGISIGDKINI 170
V I L + L ++I D++ I
Sbjct: 10 PAVRIPATLMQALNLNIDDEVKI 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.143 0.419
Gapped
Lambda K H
0.267 0.0417 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,095,058
Number of extensions: 54085
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 22
Length of query: 270
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,254,276
Effective search space: 233295336
Effective search space used: 233295336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)