BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 537021.9.peg.788_1 (270 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >537021.9.peg.788_1 Length = 270 Score = 540 bits (1390), Expect = e-155, Method: Compositional matrix adjust. Identities = 270/270 (100%), Positives = 270/270 (100%) Query: 1 MSIFSRFEVIVAWRYLFSNRKNAFISIASFISFIGVMIGVMALIVVMSVMNGFREDMIKR 60 MSIFSRFEVIVAWRYLFSNRKNAFISIASFISFIGVMIGVMALIVVMSVMNGFREDMIKR Sbjct: 1 MSIFSRFEVIVAWRYLFSNRKNAFISIASFISFIGVMIGVMALIVVMSVMNGFREDMIKR 60 Query: 61 VLGINGHVVIQQKYYPLVDYQFIANRLDFIPDVIKVLPFVSGQAFVSGLSSGGSGVLVRG 120 VLGINGHVVIQQKYYPLVDYQFIANRLDFIPDVIKVLPFVSGQAFVSGLSSGGSGVLVRG Sbjct: 61 VLGINGHVVIQQKYYPLVDYQFIANRLDFIPDVIKVLPFVSGQAFVSGLSSGGSGVLVRG 120 Query: 121 ISNSDFSYLQNSFSRFYGNVSNDFDRGKGVIIGKDLARNLGISIGDKINILSPYGDVTPM 180 ISNSDFSYLQNSFSRFYGNVSNDFDRGKGVIIGKDLARNLGISIGDKINILSPYGDVTPM Sbjct: 121 ISNSDFSYLQNSFSRFYGNVSNDFDRGKGVIIGKDLARNLGISIGDKINILSPYGDVTPM 180 Query: 181 GMGIRSKSYTVLGMFRMRFPDYDNGMVYMSLQEAQLYFNLENAVSGIEVFVKDPDAIEKT 240 GMGIRSKSYTVLGMFRMRFPDYDNGMVYMSLQEAQLYFNLENAVSGIEVFVKDPDAIEKT Sbjct: 181 GMGIRSKSYTVLGMFRMRFPDYDNGMVYMSLQEAQLYFNLENAVSGIEVFVKDPDAIEKT 240 Query: 241 HENIVRILGNGVVVIDWQQRYQIFFSCYES 270 HENIVRILGNGVVVIDWQQRYQIFFSCYES Sbjct: 241 HENIVRILGNGVVVIDWQQRYQIFFSCYES 270 >gi|254780767|ref|YP_003065180.1| lipid-A-disaccharide synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 383 Score = 24.6 bits (52), Expect = 1.9, Method: Compositional matrix adjust. Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 5/33 (15%) Query: 240 THENIVRILGNG-----VVVIDWQQRYQIFFSC 267 + EN+VR + + ++ID +Q+ Q+F +C Sbjct: 236 SQENLVRCIVSKWDISPEIIIDKEQKKQVFMTC 268 >gi|254780836|ref|YP_003065249.1| putative type I restriction-modification system DNA methylase [Candidatus Liberibacter asiaticus str. psy62] Length = 674 Score = 23.9 bits (50), Expect = 2.7, Method: Compositional matrix adjust. Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Query: 215 QLYFNLENAVSGIEVFVKDPDAIEKTHEN 243 + ++ L N G + + KD DA+EK H+N Sbjct: 291 RFHYCLSNPPFG-KKWEKDKDAVEKEHKN 318 Score = 23.9 bits (50), Expect = 3.1, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Query: 199 FPDYDNGMVYMSLQEAQLYFNLENAVSGIEVFVKD-PDAI-EKTHENIVRILGNGV 252 F D+D L++A L + + SGIE+ PD + +E+++R G+ V Sbjct: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170 >gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter asiaticus str. psy62] Length = 408 Score = 23.1 bits (48), Expect = 5.9, Method: Compositional matrix adjust. Identities = 8/14 (57%), Positives = 11/14 (78%) Query: 154 KDLARNLGISIGDK 167 +DLAR +G+ I DK Sbjct: 201 RDLAREMGLDIADK 214 >gi|254780661|ref|YP_003065074.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62] Length = 471 Score = 22.7 bits (47), Expect = 7.7, Method: Compositional matrix adjust. Identities = 12/37 (32%), Positives = 21/37 (56%) Query: 230 FVKDPDAIEKTHENIVRILGNGVVVIDWQQRYQIFFS 266 ++ DP+A+ T + L +GVV ++ +R FFS Sbjct: 51 YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFS 87 >gi|254780954|ref|YP_003065367.1| hypothetical protein CLIBASIA_04265 [Candidatus Liberibacter asiaticus str. psy62] Length = 380 Score = 22.3 bits (46), Expect = 8.6, Method: Compositional matrix adjust. Identities = 10/28 (35%), Positives = 16/28 (57%) Query: 137 YGNVSNDFDRGKGVIIGKDLARNLGISI 164 + + DF+R +I+GK +A GI I Sbjct: 29 WTDFREDFERQATLIVGKKIAVKGGIKI 56 >gi|254780755|ref|YP_003065168.1| octaprenyl-diphosphate synthase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 322 Score = 22.3 bits (46), Expect = 8.7, Method: Compositional matrix adjust. Identities = 9/21 (42%), Positives = 14/21 (66%) Query: 83 IANRLDFIPDVIKVLPFVSGQ 103 I + ++ IPDV+K L F G+ Sbjct: 23 ICSDVEMIPDVVKYLIFSGGK 43 >gi|254780967|ref|YP_003065380.1| probable multidrug resistance transporter protein [Candidatus Liberibacter asiaticus str. psy62] Length = 398 Score = 22.3 bits (46), Expect = 9.0, Method: Compositional matrix adjust. Identities = 11/35 (31%), Positives = 18/35 (51%) Query: 121 ISNSDFSYLQNSFSRFYGNVSNDFDRGKGVIIGKD 155 IS FS+L + S +G ++ G+IIG+ Sbjct: 326 ISMEPFSHLAGTASSIFGFINTVISTILGIIIGQS 360 >gi|254780788|ref|YP_003065201.1| transcription elongation factor NusA [Candidatus Liberibacter asiaticus str. psy62] Length = 526 Score = 22.3 bits (46), Expect = 9.4, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 7/79 (8%) Query: 137 YGNVSNDFDRGKGVIIGKDLARNLGISIGDKINILSPYGDVT-----PMGMGIRSKSYTV 191 YGNV D GVI + + GD++ S DV P + R+ + Sbjct: 151 YGNVIVDLGNSDGVIRRDETISRENLRPGDRVK--SYIYDVRREQRGPQVLLSRTHPQFM 208 Query: 192 LGMFRMRFPDYDNGMVYMS 210 + +F M P+ NG+V + Sbjct: 209 VKLFHMEVPEIYNGIVQVK 227 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.326 0.143 0.419 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 182,313 Number of Sequences: 1233 Number of extensions: 8227 Number of successful extensions: 43 Number of sequences better than 100.0: 14 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 16 length of query: 270 length of database: 328,796 effective HSP length: 72 effective length of query: 198 effective length of database: 240,020 effective search space: 47523960 effective search space used: 47523960 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 37 (18.9 bits)