BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 537021.9.peg.788_1
(270 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>537021.9.peg.788_1
Length = 270
Score = 540 bits (1390), Expect = e-155, Method: Compositional matrix adjust.
Identities = 270/270 (100%), Positives = 270/270 (100%)
Query: 1 MSIFSRFEVIVAWRYLFSNRKNAFISIASFISFIGVMIGVMALIVVMSVMNGFREDMIKR 60
MSIFSRFEVIVAWRYLFSNRKNAFISIASFISFIGVMIGVMALIVVMSVMNGFREDMIKR
Sbjct: 1 MSIFSRFEVIVAWRYLFSNRKNAFISIASFISFIGVMIGVMALIVVMSVMNGFREDMIKR 60
Query: 61 VLGINGHVVIQQKYYPLVDYQFIANRLDFIPDVIKVLPFVSGQAFVSGLSSGGSGVLVRG 120
VLGINGHVVIQQKYYPLVDYQFIANRLDFIPDVIKVLPFVSGQAFVSGLSSGGSGVLVRG
Sbjct: 61 VLGINGHVVIQQKYYPLVDYQFIANRLDFIPDVIKVLPFVSGQAFVSGLSSGGSGVLVRG 120
Query: 121 ISNSDFSYLQNSFSRFYGNVSNDFDRGKGVIIGKDLARNLGISIGDKINILSPYGDVTPM 180
ISNSDFSYLQNSFSRFYGNVSNDFDRGKGVIIGKDLARNLGISIGDKINILSPYGDVTPM
Sbjct: 121 ISNSDFSYLQNSFSRFYGNVSNDFDRGKGVIIGKDLARNLGISIGDKINILSPYGDVTPM 180
Query: 181 GMGIRSKSYTVLGMFRMRFPDYDNGMVYMSLQEAQLYFNLENAVSGIEVFVKDPDAIEKT 240
GMGIRSKSYTVLGMFRMRFPDYDNGMVYMSLQEAQLYFNLENAVSGIEVFVKDPDAIEKT
Sbjct: 181 GMGIRSKSYTVLGMFRMRFPDYDNGMVYMSLQEAQLYFNLENAVSGIEVFVKDPDAIEKT 240
Query: 241 HENIVRILGNGVVVIDWQQRYQIFFSCYES 270
HENIVRILGNGVVVIDWQQRYQIFFSCYES
Sbjct: 241 HENIVRILGNGVVVIDWQQRYQIFFSCYES 270
>gi|254780767|ref|YP_003065180.1| lipid-A-disaccharide synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 383
Score = 24.6 bits (52), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 240 THENIVRILGNG-----VVVIDWQQRYQIFFSC 267
+ EN+VR + + ++ID +Q+ Q+F +C
Sbjct: 236 SQENLVRCIVSKWDISPEIIIDKEQKKQVFMTC 268
>gi|254780836|ref|YP_003065249.1| putative type I restriction-modification system DNA methylase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 674
Score = 23.9 bits (50), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 215 QLYFNLENAVSGIEVFVKDPDAIEKTHEN 243
+ ++ L N G + + KD DA+EK H+N
Sbjct: 291 RFHYCLSNPPFG-KKWEKDKDAVEKEHKN 318
Score = 23.9 bits (50), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 199 FPDYDNGMVYMSLQEAQLYFNLENAVSGIEVFVKD-PDAI-EKTHENIVRILGNGV 252
F D+D L++A L + + SGIE+ PD + +E+++R G+ V
Sbjct: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
>gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 23.1 bits (48), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 154 KDLARNLGISIGDK 167
+DLAR +G+ I DK
Sbjct: 201 RDLAREMGLDIADK 214
>gi|254780661|ref|YP_003065074.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62]
Length = 471
Score = 22.7 bits (47), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 230 FVKDPDAIEKTHENIVRILGNGVVVIDWQQRYQIFFS 266
++ DP+A+ T + L +GVV ++ +R FFS
Sbjct: 51 YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFS 87
>gi|254780954|ref|YP_003065367.1| hypothetical protein CLIBASIA_04265 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 380
Score = 22.3 bits (46), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 137 YGNVSNDFDRGKGVIIGKDLARNLGISI 164
+ + DF+R +I+GK +A GI I
Sbjct: 29 WTDFREDFERQATLIVGKKIAVKGGIKI 56
>gi|254780755|ref|YP_003065168.1| octaprenyl-diphosphate synthase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 322
Score = 22.3 bits (46), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 83 IANRLDFIPDVIKVLPFVSGQ 103
I + ++ IPDV+K L F G+
Sbjct: 23 ICSDVEMIPDVVKYLIFSGGK 43
>gi|254780967|ref|YP_003065380.1| probable multidrug resistance transporter protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 398
Score = 22.3 bits (46), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 121 ISNSDFSYLQNSFSRFYGNVSNDFDRGKGVIIGKD 155
IS FS+L + S +G ++ G+IIG+
Sbjct: 326 ISMEPFSHLAGTASSIFGFINTVISTILGIIIGQS 360
>gi|254780788|ref|YP_003065201.1| transcription elongation factor NusA [Candidatus Liberibacter
asiaticus str. psy62]
Length = 526
Score = 22.3 bits (46), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 137 YGNVSNDFDRGKGVIIGKDLARNLGISIGDKINILSPYGDVT-----PMGMGIRSKSYTV 191
YGNV D GVI + + GD++ S DV P + R+ +
Sbjct: 151 YGNVIVDLGNSDGVIRRDETISRENLRPGDRVK--SYIYDVRREQRGPQVLLSRTHPQFM 208
Query: 192 LGMFRMRFPDYDNGMVYMS 210
+ +F M P+ NG+V +
Sbjct: 209 VKLFHMEVPEIYNGIVQVK 227
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.326 0.143 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,313
Number of Sequences: 1233
Number of extensions: 8227
Number of successful extensions: 43
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 16
length of query: 270
length of database: 328,796
effective HSP length: 72
effective length of query: 198
effective length of database: 240,020
effective search space: 47523960
effective search space used: 47523960
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 37 (18.9 bits)