HHsearch alignment for GI: peg_789 and conserved domain: TIGR03434
>TIGR03434 ADOP Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.
Probab=99.93 E-value=4.5e-25 Score=145.88 Aligned_cols=118 Identities=27% Similarity=0.484 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999999999999999999999999980755222203688898765323345667887531000000001200026
Q 537021.9.peg.7 6 ALIVLVAALNIISSLVMLVQERRRDIAILRTMGARISSIMSIFFMIGAFIGIAGTGMGMIVGILISCNVEAIRKFFLHTL 85 (143)
Q Consensus 6 ~~i~~i~~~~i~~~~~~~i~~R~~eigilkalG~s~~~I~~~~~~E~~~l~~ig~i~G~~lg~~l~~~i~~~~~~~~~~~ 85 (143)
T Consensus 686 ~lailia~lGl~gl~~~~v~~R~kEIgIRkalGAs~~~I~~ll~~e~l~l~~ig~~ig~~la~~~~~~l~~~~------~ 759 (803)
T TIGR03434 686 ALALLLAAIGLYGVLAYSVAQRTREIGIRMALGAQRGDVLRLVLRQGLRLAAAGLAIGLAAALALARLLASLL------F 759 (803)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------C
T ss_conf 9999999999999999999999999998274289888999999999999999999999999999999999871------6
Q ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCC
Q ss_conf 8513680022331057044069999999999999999999999998299999982187
Q 537021.9.peg.7 86 GVVIFDTEAYLLTELPSKISWVEVSWIISMALALSLLATIFPSWKASRIDPVKVLRGE 143 (143)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pa~~~~k~~p~~~lr~e 143 (143)
T Consensus 760 ~-------------~-~~~~~~~f~~~~~~~~~i~lla~~~pa~rAa~~nPv~aLr~E 803 (803)
T TIGR03434 760 G-------------V-SPTDPLTFAAVAALLLAVALLACYLPARRAARVDPMIALRAE 803 (803)
T ss_pred C-------------C-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCC
T ss_conf 6-------------8-877779999999999999999999999999853999896278