Query 537021.9.peg.789_1
Match_columns 143
No_of_seqs 109 out of 6853
Neff 8.5
Searched_HMMs 23785
Date Wed May 25 00:26:12 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_789.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wr1_B Ubiquitin-like protein 19.9 36 0.0015 13.0 2.3 23 28-50 18-40 (58)
2 2bwb_A Ubiquitin-like protein 17.0 42 0.0018 12.6 2.9 24 26-49 5-29 (46)
3 1vej_A Riken cDNA 4931431F19; 14.5 49 0.0021 12.3 2.0 22 28-49 30-51 (74)
4 2knz_A Ubiquilin-4; cytoplasm, 13.9 51 0.0021 12.2 2.1 23 27-49 11-33 (53)
5 2jy5_A Ubiquilin-1; UBA, alter 13.7 52 0.0022 12.2 2.4 22 28-49 13-34 (52)
6 2dah_A Ubiquilin-3; UBA domain 12.7 56 0.0024 12.0 2.3 23 28-50 10-32 (54)
7 2dna_A Unnamed protein product 10.2 68 0.0029 11.6 2.0 22 28-49 20-41 (67)
8 2jpc_A SSRB; DNA binding prote 7.4 91 0.0038 10.9 1.7 21 27-47 2-22 (61)
9 3lti_A DNA-directed RNA polyme 7.3 87 0.0036 11.0 0.3 20 31-50 60-79 (296)
10 3dhw_A D-methionine transport 5.9 1.1E+02 0.0046 10.5 4.9 35 28-62 117-151 (217)
No 1
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=19.87 E-value=36 Score=13.00 Aligned_cols=23 Identities=13% Similarity=-0.035 Sum_probs=18.0
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 99999999807552222036888
Q 537021.9.peg.7 28 RRDIAILRTMGARISSIMSIFFM 50 (143)
Q Consensus 28 ~~eigilkalG~s~~~I~~~~~~ 50 (143)
.+|+..||.+|+++.+.-..-+.
T Consensus 18 ~~qL~~L~~MGF~d~~~N~~AL~ 40 (58)
T 1wr1_B 18 EHQLRQLNDMGFFDFDRNVAALR 40 (58)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 99999999959996899999999
No 2
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=17.01 E-value=42 Score=12.65 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=18.7
Q ss_pred HH-HHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 99-9999999980755222203688
Q 537021.9.peg.7 26 ER-RRDIAILRTMGARISSIMSIFF 49 (143)
Q Consensus 26 ~R-~~eigilkalG~s~~~I~~~~~ 49 (143)
+| .+|...||.+|+++.+.-..-+
T Consensus 5 ~ry~~QL~~L~~MGF~d~~~Ni~AL 29 (46)
T 2bwb_A 5 ERYEHQLRQLNDMGFFDFDRNVAAL 29 (46)
T ss_dssp HHTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 9999999999984999789999999
No 3
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=14.46 E-value=49 Score=12.29 Aligned_cols=22 Identities=9% Similarity=0.150 Sum_probs=17.6
Q ss_pred HHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 9999999980755222203688
Q 537021.9.peg.7 28 RRDIAILRTMGARISSIMSIFF 49 (143)
Q Consensus 28 ~~eigilkalG~s~~~I~~~~~ 49 (143)
++|...||.+|+++.+.-..-+
T Consensus 30 ~~QL~~L~~MGF~d~~~N~~AL 51 (74)
T 1vej_A 30 QQELEELKALGFANRDANLQAL 51 (74)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHH
T ss_conf 9999999994899789999999
No 4
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=13.93 E-value=51 Score=12.21 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=17.9
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 99999999980755222203688
Q 537021.9.peg.7 27 RRRDIAILRTMGARISSIMSIFF 49 (143)
Q Consensus 27 R~~eigilkalG~s~~~I~~~~~ 49 (143)
-.+|+..|+.+|+++++--..-+
T Consensus 11 y~~qL~~L~eMGF~D~~~Nl~AL 33 (53)
T 2knz_A 11 FQQQLEQLNSMGFINREANLQAL 33 (53)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99999999994999669999999
No 5
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=13.66 E-value=52 Score=12.17 Aligned_cols=22 Identities=14% Similarity=0.086 Sum_probs=17.2
Q ss_pred HHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 9999999980755222203688
Q 537021.9.peg.7 28 RRDIAILRTMGARISSIMSIFF 49 (143)
Q Consensus 28 ~~eigilkalG~s~~~I~~~~~ 49 (143)
.+|...|+.+|+++++.-..-+
T Consensus 13 ~~qL~~L~eMGF~d~~~n~~AL 34 (52)
T 2jy5_A 13 QQQLEQLSAMGFLNREANLQAL 34 (52)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHH
T ss_conf 9999999994999669999999
No 6
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=12.66 E-value=56 Score=12.01 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=18.1
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 99999999807552222036888
Q 537021.9.peg.7 28 RRDIAILRTMGARISSIMSIFFM 50 (143)
Q Consensus 28 ~~eigilkalG~s~~~I~~~~~~ 50 (143)
.+|...|+.+|+++.+.-..-+.
T Consensus 10 ~~qL~~L~~MGF~d~~~Nl~aL~ 32 (54)
T 2dah_A 10 QVQLEQLRSMGFLNREANLQALI 32 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 99999999949996899999999
No 7
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=10.23 E-value=68 Score=11.57 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=17.5
Q ss_pred HHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 9999999980755222203688
Q 537021.9.peg.7 28 RRDIAILRTMGARISSIMSIFF 49 (143)
Q Consensus 28 ~~eigilkalG~s~~~I~~~~~ 49 (143)
..|+..|+.+|+++.+.-..-+
T Consensus 20 ~~qL~~L~~MGF~d~~~nl~AL 41 (67)
T 2dna_A 20 SKEMECLQAMGFVNYNANLQAL 41 (67)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHH
T ss_conf 9999999994898699999999
No 8
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=7.37 E-value=91 Score=10.93 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=15.0
Q ss_pred HHHHHHHHHHCCCCCCCCCHH
Q ss_conf 999999999807552222036
Q 537021.9.peg.7 27 RRRDIAILRTMGARISSIMSI 47 (143)
Q Consensus 27 R~~eigilkalG~s~~~I~~~ 47 (143)
|.+|+--+-+-|.|.++|-..
T Consensus 2 RE~evl~ll~~G~s~~eIA~~ 22 (61)
T 2jpc_A 2 RERQVLKLIDEGYTNHGISEK 22 (61)
T ss_dssp HHHHHHHHHHTSCCSHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHH
T ss_conf 799999999827999999989
No 9
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=7.28 E-value=87 Score=11.04 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=15.5
Q ss_pred HHHHHHCCCCCCCCCHHHHH
Q ss_conf 99999807552222036888
Q 537021.9.peg.7 31 IAILRTMGARISSIMSIFFM 50 (143)
Q Consensus 31 igilkalG~s~~~I~~~~~~ 50 (143)
.-.|||+|++..++...++.
T Consensus 60 t~lLrAlG~~~~~il~~~~~ 79 (296)
T 3lti_A 60 TIILRALNYTTEQILDLFFE 79 (296)
T ss_dssp HHHHHHTTCCHHHHHHHHCC
T ss_pred HHHHHHHCCCHHHHHHHHCC
T ss_conf 99998710325667787516
No 10
>3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: f.58.1.1
Probab=5.92 E-value=1.1e+02 Score=10.51 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=24.4
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999807552222036888987653233456
Q 537021.9.peg.7 28 RRDIAILRTMGARISSIMSIFFMIGAFIGIAGTGM 62 (143)
Q Consensus 28 ~~eigilkalG~s~~~I~~~~~~E~~~l~~ig~i~ 62 (143)
++..-.-|++|+|++|+++...+=...-+++....
T Consensus 117 ~~~~eAA~~lGas~~q~f~~vilP~~~p~ii~~~~ 151 (217)
T 3dhw_A 117 TGLIEASRAMGATPMQIVRKVLLPEALPGLVNAAT 151 (217)
T ss_dssp TTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999987189898999697419978999999999
Done!