RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= 537021.9.peg.789_1
(143 letters)
>gnl|CDD|34229 COG4591, LolE, ABC-type transport system, involved in lipoprotein
release, permease component [Cell envelope biogenesis,
outer membrane].
Length = 408
Score = 132 bits (333), Expect = 4e-32
Identities = 67/143 (46%), Positives = 97/143 (67%), Gaps = 6/143 (4%)
Query: 1 MFVILALIVLVAALNIISSLVMLVQERRRDIAILRTMGARISSIMSIFFMIGAFIGIAGT 60
MF+IL LI+LVAA NIISSL MLV+E+ R+IAILR MGA S IM IF + G IG+ G
Sbjct: 272 MFIILVLIILVAAFNIISSLTMLVKEKTREIAILRAMGASPSHIMRIFLLQGLIIGLIGA 331
Query: 61 GMGMIVGILISCNVEAIRKFFLHTLGVVIFDTEAYLLTELPSKISWVEVSWIISMALALS 120
+G+I+G+L++ N+ +I F LG ++ LP ++S ++V ++ AL LS
Sbjct: 332 LLGVILGVLLALNLNSIIIFIEPLLGHTFG------ISTLPIELSLLDVVLVLVFALLLS 385
Query: 121 LLATIFPSWKASRIDPVKVLRGE 143
LLAT++P+ +AS++DP + LR E
Sbjct: 386 LLATLYPARRASKLDPAEALRYE 408
>gnl|CDD|145704 pfam02687, FtsX, Predicted permease. This is a family of predicted
permeases and hypothetical transmembrane proteins. The
lipoprotein-releasing system transmembrane protein lolC
from Buchnera aphidicola has been shown to transport
lipids targeted to the outer membrane across the inner
membrane. Both lolC and an ATP-binding cassette
transporter-like protein from Streptococcus cristatus
have been shown to require ATP.
Length = 174
Score = 46.3 bits (110), Expect = 3e-06
Identities = 30/136 (22%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 1 MFVILALIVLVAALNIISSLVMLVQERRRDIAILRTMGARISSIMSIFFMIGAFIGIAGT 60
+ ++ L++L+A L +++ L + + ERRR+I IL+ +GA I + + +G+ G+
Sbjct: 53 LSLLAVLLLLLALLILLNLLSISIAERRREIGILKALGASKKQIFKLLLLEALLLGLIGS 112
Query: 61 GMGMIVGILISCNVEAIRKFFLHTLGVVIFDTEAYLLTELPSKISWVEVSWIISMALALS 120
+G+++G L++ ++ + LP I + + ++ + L ++
Sbjct: 113 LLGLLLGFLLA--------------YLLSSAIGYFSGFSLPLVIDPIVILLVLLLILLIA 158
Query: 121 LLATIFPSWKASRIDP 136
LLA++ P+ + +I P
Sbjct: 159 LLASLLPARRILKISP 174
>gnl|CDD|30922 COG0577, SalY, ABC-type antimicrobial peptide transport system,
permease component [Defense mechanisms].
Length = 419
Score = 36.7 bits (83), Expect = 0.002
Identities = 37/143 (25%), Positives = 75/143 (52%), Gaps = 12/143 (8%)
Query: 1 MFVILALIVLVAALNIISSLVMLVQERRRDIAILRTMGARISSIMSIFFMIGAFIGIAGT 60
I + ++V A+ I + L++ V ER R+I IL+ +GA I+ F + +G+ G
Sbjct: 289 DKAIAVISLIVGAIGIYNILLVSVLERTREIGILKALGATRREILLQFLLEALILGLIGG 348
Query: 61 GMGMIVGILISCNVEAIRKFFLHTLGVVIFDTEAYLLTELPSKISWVEVSWIISMALALS 120
+G+++G+ +S L ++ + L LP +S + + + +AL +
Sbjct: 349 LLGILLGLGLS------------LLLALLLIASLFFLLALPILLSPLLILLALIVALLVG 396
Query: 121 LLATIFPSWKASRIDPVKVLRGE 143
++A + P+ KA+++DP++ LR E
Sbjct: 397 VIAGLLPARKAAKLDPIEALRKE 419
>gnl|CDD|32360 COG2177, FtsX, Cell division protein [Cell division and chromosome
partitioning].
Length = 297
Score = 35.6 bits (82), Expect = 0.005
Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 5/121 (4%)
Query: 2 FVILALIVLVAALNIISSLVMLVQERRRDIAILRTMGARISSIMSIFFMIGAFIGIAGTG 61
+ L+ L A L I +++ + + RRR+I +++ +GA S I F G IG+ G
Sbjct: 171 IGLSILLALAAVLLIGNTIRLAIFSRRREIEVMKLVGATDSFIRRPFLYEGMLIGLLGAL 230
Query: 62 MGMIVGILISCNVEAIRK-----FFLHTLGVVIFDTEAYLLTELPSKISWVEVSWIISMA 116
+ + + L+ + F + + E LL + I +
Sbjct: 231 IALALAALLLAGYRSSVNNVAPQFGQAFGLLGLGLDEVLLLLGILLLIGVLIAWLASLRH 290
Query: 117 L 117
L
Sbjct: 291 L 291
>gnl|CDD|32941 COG3127, COG3127, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, permease component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 829
Score = 33.3 bits (76), Expect = 0.026
Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 21/140 (15%)
Query: 3 VILALIVLVAALNIISSLVMLVQERRRDIAILRTMGARISSIMSIFFMIGAFIGIAGTGM 62
V L + L + ++L + R ++ +LRT+GA + + + + A +G+ +
Sbjct: 710 VAAVLALAAGVLVLAAALAAGNRARVQEAVVLRTLGATRALLRTTLWAEYALLGLVAGLV 769
Query: 63 GMIVGILISCNVEAIRKFFLHTLGVVIFDTEAYLLTELPSKISWVEVSWIISMALALSLL 122
I + + A +FD LP W + ++ AL ++
Sbjct: 770 AAIGAEAAAWVLVAK-----------VFD--------LPWSPDWALWTIVL--ALVGAVG 808
Query: 123 ATIFPSWKASRIDPVKVLRG 142
+ W VLR
Sbjct: 809 LGLAGGWLVLGQKAAPVLRQ 828
Score = 30.2 bits (68), Expect = 0.23
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 23/143 (16%)
Query: 5 LALIVLVAALNIISSLVMLVQ---ERRRD-IAILRTMGARISSIMSIFFMIGAFIGIAGT 60
L L+ L+A L ++ V+ + R D IAIL+ +GA + ++ + + + G
Sbjct: 257 LTLVGLLALLLAGVAVANAVRHYLDSRYDAIAILKCLGASRGQLRLLYLLQILMVLLLGI 316
Query: 61 GMGMIVGILISCNVEAIRKFFLHTLGVVIFDTEAYLLTELPSKISWVEVSWIISMA--LA 118
+G+++G L + L + L LP+ W W +++A
Sbjct: 317 AIGLVLGALA----PLVLMALL----------ASLLPVPLPAGGLW---PWALALAALFL 359
Query: 119 LSLLATIFPSWKASRIDPVKVLR 141
++L + P + R+ P+ VLR
Sbjct: 360 IALAFALLPLGRLRRVPPLAVLR 382
>gnl|CDD|145925 pfam03035, RNA_capsid, Calicivirus putative RNA polymerase/capsid
protein.
Length = 226
Score = 29.3 bits (66), Expect = 0.43
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 50 MIGAFI-GIAGTGMGMIVGILISCNVEAI 77
M GAFI G+AG +G VG LI+ AI
Sbjct: 1 MAGAFIAGLAGDVLGSGVGSLINAGANAI 29
>gnl|CDD|36330 KOG1114, KOG1114, KOG1114, Tripeptidyl peptidase II
[Posttranslational modification, protein turnover,
chaperones].
Length = 1304
Score = 27.2 bits (60), Expect = 1.7
Identities = 8/43 (18%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 71 SCNVEAIRKFFLHTLGVV----IFDTEAYLLTELPSKISWVEV 109
S ++E+ +F++HT ++ + + E + +PS +
Sbjct: 731 STSLESTNRFWIHTNQLIPQRKLREAETEKIMSVPSNNETSKA 773
>gnl|CDD|34564 COG4956, COG4956, Integral membrane protein (PIN domain
superfamily) [General function prediction only].
Length = 356
Score = 26.7 bits (59), Expect = 2.4
Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 4/127 (3%)
Query: 1 MFVILALIVLVAALNIISSLVMLVQERRRDIAILRTMGARISSIMSIFFMI-GAFIGIAG 59
+IL I++ A L +L +D A L IFF+I F
Sbjct: 4 WIIILLFIIIGAVLGFAVIPELLADLGIQDTAFLNNEYVDALIGAIIFFLISFWFGKYVL 63
Query: 60 TGMGMIVGILISCNVEAIRKFFLHTLGVVIFDTEAYLLTELPSKISWVEVSWIISMALAL 119
+ + + V I T+G++I A LL+ + +S II + L +
Sbjct: 64 NWLKRLEEQIRKLPVTTI---LFGTIGLIIGLLIAVLLSSPLFLLPIPFISTIIPVILTI 120
Query: 120 SLLATIF 126
L F
Sbjct: 121 ILAYFGF 127
>gnl|CDD|31116 COG0773, MurC, UDP-N-acetylmuramate-alanine ligase [Cell envelope
biogenesis, outer membrane].
Length = 459
Score = 26.3 bits (58), Expect = 3.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 54 FIGIAGTGMGMIVGIL 69
FIGI G GM + IL
Sbjct: 12 FIGIGGIGMSGLAEIL 27
>gnl|CDD|34102 COG4395, COG4395, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 281
Score = 25.7 bits (56), Expect = 4.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 45 MSIFFMIGAFIGIAGTGMGMIVGILISCNVEAIRKFF 81
+S F G F GIA + +++ LI + +FF
Sbjct: 44 LSGMFFGGLFFGIAAFLIFLLLITLIGFVIMLEMRFF 80
>gnl|CDD|177168 MTH00106, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 115
Score = 24.9 bits (55), Expect = 7.7
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 79 KFFLHTLGVVIFDTEAYLLTELPSKISWVEVSWIISMALAL-SLLA 123
KFFL + ++FD E LL LP ++ +++MAL L SLLA
Sbjct: 54 KFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALLLISLLA 99
>gnl|CDD|30129 cd01556, EPSP_synthase, EPSP synthase domain. 3-phosphoshikimate
1-carboxyvinyltransferase
(5-enolpyruvylshikimate-3-phosphate synthase) (EC
2.5.1.19) catalyses the reaction between
shikimate-3-phosphate (S3P) and phosphoenolpyruvate
(PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP),
an intermediate in the shikimate pathway leading to
aromatic amino acid biosynthesis. The reaction is
phosphoenolpyruvate + 3-phosphoshikimate = phosphate +
5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in
bacteria and plants but not animals. The enzyme is the
target of the widely used herbicide glyphosate, which
has been shown to occupy the active site. In bacteria
and plants, it is a single domain protein, while in
fungi, the domain is found as part of a multidomain
protein with functions that are all part of the
shikimate pathway..
Length = 409
Score = 24.8 bits (54), Expect = 9.1
Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 12/68 (17%)
Query: 10 LVAAL----NIISSLVMLVQERRRDIAILRTMGARISSIMSIFFMIGAFIGIAGTGMGMI 65
L AA I+ V L I +L+ MGA I IG + G +
Sbjct: 234 LAAAAITGSEIVIKNVGLNSGDTGIIDVLKEMGADIE--------IGNEDTVVVESGGKL 285
Query: 66 VGILISCN 73
GI I N
Sbjct: 286 KGIDIDGN 293
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.332 0.143 0.411
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,727,271
Number of extensions: 92898
Number of successful extensions: 631
Number of sequences better than 10.0: 1
Number of HSP's gapped: 611
Number of HSP's successfully gapped: 153
Length of query: 143
Length of database: 6,263,737
Length adjustment: 85
Effective length of query: 58
Effective length of database: 4,426,972
Effective search space: 256764376
Effective search space used: 256764376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 52 (23.9 bits)