RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= 537021.9.peg.789_1 (143 letters) >d3seba1 b.40.2.2 (A:1-121) Staphylococcal enterotoxin B, SEB {Staphylococcus aureus [TaxId: 1280]} Length = 121 Score = 27.6 bits (61), Expect = 0.48 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 4/35 (11%) Query: 73 NVEAIRKFFLHTLGVVIFDTEA----YLLTELPSK 103 NV++I +F L I DT+ + E +K Sbjct: 37 NVKSIDQFLYFDLIYSIKDTKLGNYDNVRVEFKNK 71 >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Length = 96 Score = 24.9 bits (54), Expect = 2.7 Identities = 10/22 (45%), Positives = 13/22 (59%) Query: 54 FIGIAGTGMGMIVGILISCNVE 75 FIGI G GM I IL++ + Sbjct: 13 FIGIGGAGMSGIAEILLNEGYQ 34 >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 Score = 23.9 bits (51), Expect = 5.8 Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 6/41 (14%) Query: 75 EAIRKFFLHTLGVVI------FDTEAYLLTELPSKISWVEV 109 AI +F + V + D L ++ +++V++ Sbjct: 86 AAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDI 126 >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Length = 89 Score = 23.7 bits (51), Expect = 6.2 Identities = 6/16 (37%), Positives = 8/16 (50%) Query: 54 FIGIAGTGMGMIVGIL 69 F+GI G GM + Sbjct: 6 FVGIGGIGMSAVALHE 21 >d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]} Length = 297 Score = 23.7 bits (51), Expect = 7.1 Identities = 6/31 (19%), Positives = 12/31 (38%) Query: 41 ISSIMSIFFMIGAFIGIAGTGMGMIVGILIS 71 +++S + G + G M + L S Sbjct: 248 FGAVLSFLPISGLAVTALGVIGIMTISYLSS 278 >d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]} Length = 360 Score = 23.0 bits (48), Expect = 9.5 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 9/66 (13%) Query: 17 ISSLVMLVQERRRDIAILRTMGARISSIMSIFFMIGAFIGIAGTGMGMIVGILISCNVEA 76 I +L + + AR++ F I GT G ++ +IS E Sbjct: 18 IIPATILEFLEGQLQEMDNNADARLADY---------FDVIGGTSTGGLLTAMISTPNEN 68 Query: 77 IRKFFL 82 R F Sbjct: 69 NRPFAA 74 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.332 0.143 0.411 Gapped Lambda K H 0.267 0.0582 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 513,839 Number of extensions: 21983 Number of successful extensions: 76 Number of sequences better than 10.0: 1 Number of HSP's gapped: 76 Number of HSP's successfully gapped: 20 Length of query: 143 Length of database: 2,407,596 Length adjustment: 77 Effective length of query: 66 Effective length of database: 1,350,386 Effective search space: 89125476 Effective search space used: 89125476 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 48 (22.6 bits)