Query         537021.9.peg.80_1
Match_columns 37
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Mon May 23 07:24:07 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_80.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3bvs_A Alkylpurine DNA glycos  12.5      83  0.0024   15.2   1.0   18    4-21      1-18  (61)
  2 >1mc3_A Glucose-1-phosphate th   9.9 1.4E+02  0.0042   14.1   1.5   22   16-37     22-43  (46)
  3 >2ayx_A Sensor kinase protein    8.8 1.5E+02  0.0045   13.9   1.3   18   18-35     16-33  (117)
  4 >3iyd_C DNA-directed RNA polym   8.3      99  0.0029   14.8   0.2   17    6-22     40-56  (146)
  5 >1qtn_B Caspase-8; complex (pr   7.2 1.3E+02  0.0039   14.2   0.4   21   15-35     27-47  (95)
  6 >2waq_B DNA-directed RNA polym   6.7 1.9E+02  0.0056   13.4   1.0   18    5-22     53-70  (163)
  7 >1sc3_B Interleukin-1 beta con   6.7 1.4E+02  0.0042   14.1   0.3   21   15-35     23-43  (88)
  8 >2g7j_A Putative cytoplasmic p   6.5   2E+02  0.0058   13.3   1.0   21   12-37     94-114 (124)
  9 >2aja_A Ankyrin repeat family    6.4 1.9E+02  0.0057   13.4   0.9   18   16-33     67-84  (156)
 10 >3bq0_A POL IV, DBH, DNA polym   5.9 2.4E+02  0.0071   12.9   1.2   11   26-36     39-49  (51)

No 1  
>>3bvs_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA repair, hydrolase; 2.10A {Bacillus cereus} (A:179-239)
Probab=12.49  E-value=83  Score=15.24  Aligned_cols=18  Identities=33%  Similarity=0.654  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             675688886127654213
Q 537021.9.peg.8    4 RKFTLLKAIGFSVRNDMR   21 (37)
Q Consensus         4 rkftllkaigfsvrndmr   21 (37)
                      +.|-+-||||...|.--+
T Consensus         1 kEfFIqKAIGWaLReysK   18 (61)
T 3bvs_A            1 KEFFIQKAIGWVLREYAK   18 (61)
T ss_dssp             CCHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHH
T ss_conf             189999999999999973


No 2  
>>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} (A:251-296)
Probab=9.86  E-value=1.4e+02  Score=14.06  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             6542135489999999850279
Q 537021.9.peg.8   16 VRNDMRNTCFIRYLLSLFRDKK   37 (37)
Q Consensus        16 vrndmrntcfiryllslfrdkk   37 (37)
                      .-+.|.++-+-+||+++.++++
T Consensus        22 ~a~~~~ks~YG~YL~~l~~~~~   43 (46)
T 1mc3_A           22 AASSLAKTGYGQYLLELLRARP   43 (46)
T ss_dssp             HHHHTTTSHHHHHHHHTSSCCC
T ss_pred             HHHHCCCCCHHHHHHHHHHHCC
T ss_conf             9987348958999999997276


No 3  
>>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} (A:1-117)
Probab=8.76  E-value=1.5e+02  Score=13.87  Aligned_cols=18  Identities=17%  Similarity=0.349  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHC
Q ss_conf             421354899999998502
Q 537021.9.peg.8   18 NDMRNTCFIRYLLSLFRD   35 (37)
Q Consensus        18 ndmrntcfiryllslfrd   35 (37)
                      -++||...-+||.++.+.
T Consensus        16 L~iRNa~Le~yL~~lL~~   33 (117)
T 2ayx_A           16 LAVRNASLCQFLETSLQR   33 (117)
T ss_dssp             EECCCHHHHHHHHHHHTT
T ss_pred             EECCCHHHHHHHHHHHHH
T ss_conf             981998999999999998


No 4  
>>3iyd_C DNA-directed RNA polymerase subunit beta; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12} (C:168-313)
Probab=8.26  E-value=99  Score=14.85  Aligned_cols=17  Identities=12%  Similarity=0.309  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             56888861276542135
Q 537021.9.peg.8    6 FTLLKAIGFSVRNDMRN   22 (37)
Q Consensus         6 ftllkaigfsvrndmrn   22 (37)
                      +++|+|+|+|-..-...
T Consensus        40 t~lLrAlG~s~~~Il~~   56 (146)
T 3iyd_C           40 TIILRALNYTTEQILDL   56 (146)
T ss_dssp             TTHHHHTSCCTTTSSSS
T ss_pred             HHHHHHCCCCHHHHHHH
T ss_conf             99998719987999987


No 5  
>>1qtn_B Caspase-8; complex (protease/inhibitor), apoptosis, dithiane-DIOL, caspase, cysteine-protease, tetramer; 1.20A {Homo sapiens} (B:)
Probab=7.17  E-value=1.3e+02  Score=14.20  Aligned_cols=21  Identities=33%  Similarity=0.464  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHC
Q ss_conf             765421354899999998502
Q 537021.9.peg.8   15 SVRNDMRNTCFIRYLLSLFRD   35 (37)
Q Consensus        15 svrndmrntcfiryllslfrd   35 (37)
                      |.|+.-.+.+||..|...|+.
T Consensus        27 a~R~~~~GSwfIq~L~~~l~~   47 (95)
T 1qtn_B           27 SYRNPAEGTWYIQSLCQSLRE   47 (95)
T ss_dssp             CEEETTTEEHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHH
T ss_conf             885599898999999999998


No 6  
>>2waq_B DNA-directed RNA polymerase RPO2 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_B 2pmz_B 3hkz_B (B:174-336)
Probab=6.72  E-value=1.9e+02  Score=13.42  Aligned_cols=18  Identities=22%  Similarity=0.375  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             756888861276542135
Q 537021.9.peg.8    5 KFTLLKAIGFSVRNDMRN   22 (37)
Q Consensus         5 kftllkaigfsvrndmrn   22 (37)
                      -+++|+|.|++--.++-+
T Consensus        53 i~~llrALG~~sd~eI~~   70 (163)
T 2waq_B           53 FVILMRALGILTDRDIVY   70 (163)
T ss_dssp             HHHHHHHTTCCCHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHH
T ss_conf             999998718774220243


No 7  
>>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} (B:)
Probab=6.65  E-value=1.4e+02  Score=14.07  Aligned_cols=21  Identities=24%  Similarity=0.374  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHC
Q ss_conf             765421354899999998502
Q 537021.9.peg.8   15 SVRNDMRNTCFIRYLLSLFRD   35 (37)
Q Consensus        15 svrndmrntcfiryllslfrd   35 (37)
                      |.|+.-.+..||..|...|++
T Consensus        23 a~r~~~~GS~fiq~l~~~l~~   43 (88)
T 1sc3_B           23 SWRHPTMGSVFIGRLIEHMQE   43 (88)
T ss_dssp             CCEETTTEEHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHH
T ss_conf             886699998889999999999


No 8  
>>2g7j_A Putative cytoplasmic protein; STR72, structure, autostructure, structural genomics, PSI, protein structure initiative; NMR {Salmonella typhimurium LT2} (A:)
Probab=6.52  E-value=2e+02  Score=13.33  Aligned_cols=21  Identities=52%  Similarity=0.738  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             61276542135489999999850279
Q 537021.9.peg.8   12 IGFSVRNDMRNTCFIRYLLSLFRDKK   37 (37)
Q Consensus        12 igfsvrndmrntcfiryllslfrdkk   37 (37)
                      -|||-|.-     .-|||-++|-+.+
T Consensus        94 HGFsSR~~-----L~ryl~~~Fg~~~  114 (124)
T 2g7j_A           94 HGFSSRIA-----LERYLNGLFGDEK  114 (124)
T ss_dssp             ECCSCHHH-----HHHHHHHHHTC--
T ss_pred             CCCCHHHH-----HHHHHHHHHCCCC
T ss_conf             56236999-----9999999746766


No 9  
>>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} (A:221-376)
Probab=6.37  E-value=1.9e+02  Score=13.38  Aligned_cols=18  Identities=44%  Similarity=0.338  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             654213548999999985
Q 537021.9.peg.8   16 VRNDMRNTCFIRYLLSLF   33 (37)
Q Consensus        16 vrndmrntcfiryllslf   33 (37)
                      -|||---+--||+|||+-
T Consensus        67 RRND~~l~DdiRfLLsIP   84 (156)
T 2aja_A           67 RRNDEVLLDDIRFLLSIP   84 (156)
T ss_dssp             HHCCGGGHHHHHHHHTST
T ss_pred             HHCCCCHHHHHHHHHHHH
T ss_conf             850578699999998646


No 10 
>>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} (A:185-235)
Probab=5.87  E-value=2.4e+02  Score=12.89  Aligned_cols=11  Identities=45%  Similarity=0.652  Sum_probs=8.9

Q ss_pred             HHHHHHHHHCC
Q ss_conf             99999985027
Q 537021.9.peg.8   26 IRYLLSLFRDK   36 (37)
Q Consensus        26 iryllslfrdk   36 (37)
                      -.||+||-||+
T Consensus        39 a~YL~~LA~n~   49 (51)
T 3bq0_A           39 ALYLLKLAQNK   49 (51)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHCC
T ss_conf             57889752023


Done!