Query         537021.9.peg.813_1
Match_columns 41
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed May 25 00:10:53 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_813.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1kama_ c.26.1.3 (A:) Nicotina   6.8      66  0.0048   13.5   0.7   16   13-28      1-18  (189)
  2 d1eara1 b.107.1.1 (A:1-74) Ure   4.2      86  0.0063   12.9  -0.1   10    1-10      1-10  (74)
  3 d1rbli_ d.73.1.1 (I:) Ribulose   2.9      45  0.0033   14.2  -2.4   13   13-25     83-95  (109)
  4 d1tzaa_ b.1.23.1 (A:) ApaG {Sh   2.9 1.9E+02   0.013   11.4   2.2   20    9-28    105-124 (132)
  5 d1xvsa_ b.1.23.1 (A:) ApaG {Vi   2.4 2.1E+02   0.016   11.1   2.1   17    9-25    107-123 (124)
  6 d2pp6a1 b.106.1.2 (A:1-93) Gif   2.4 2.2E+02   0.016   11.0   0.7   10   10-19     80-89  (93)
  7 d1qd1a1 d.58.34.1 (A:2-180) Fo   2.4 2.2E+02   0.016   11.0   1.0   23    4-26     75-97  (179)
  8 d1xq4a_ b.1.23.1 (A:) ApaG {Bo   2.3 2.3E+02   0.017   10.9   2.2   17    9-25    106-122 (123)
  9 d3cx5d2 f.23.11.1 (D:261-307)    2.2   2E+02   0.014   11.2   0.1   11   15-25     36-46  (47)
 10 d1ppjd2 f.23.11.1 (D:196-241)    2.1   2E+02   0.015   11.2   0.1   11   15-25     36-46  (46)

No 1  
>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Probab=6.79  E-value=66  Score=13.48  Aligned_cols=16  Identities=50%  Similarity=0.941  Sum_probs=9.0

Q ss_pred             CEEEEEE--EECCCCCCC
Q ss_conf             1068999--831898655
Q 537021.9.peg.8   13 NAKIRIF--SFVPPKASH   28 (41)
Q Consensus        13 nakirif--sfvppkash   28 (41)
                      |-||-+|  ||-||...|
T Consensus         1 ~kkIalfgGSFdP~H~GH   18 (189)
T d1kama_           1 SKKIGIFGGTFDPPHNGH   18 (189)
T ss_dssp             CCEEEEEEECCSSCCHHH
T ss_pred             CCEEEEECCCCCCCCHHH
T ss_conf             977999663769898899


No 2  
>d1eara1 b.107.1.1 (A:1-74) Urease metallochaperone UreE, N-terminal domain {Bacillus pasteurii [TaxId: 1474]}
Probab=4.16  E-value=86  Score=12.94  Aligned_cols=10  Identities=50%  Similarity=0.777  Sum_probs=7.6

Q ss_pred             CEEEECCCCC
Q ss_conf             9775414898
Q 537021.9.peg.8    1 MIITNISGNH   10 (41)
Q Consensus         1 miitnisgnh   10 (41)
                      ||++.|.||-
T Consensus         1 mii~~IlGni   10 (74)
T d1eara1           1 MVITKIVGHI   10 (74)
T ss_dssp             CEECSCCEEC
T ss_pred             CEEEEEEECC
T ss_conf             9778986250


No 3  
>d1rbli_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Synechococcus sp., strain pcc 6301 [TaxId: 1131]}
Probab=2.93  E-value=45  Score=14.25  Aligned_cols=13  Identities=31%  Similarity=0.368  Sum_probs=6.9

Q ss_pred             CEEEEEEEECCCC
Q ss_conf             1068999831898
Q 537021.9.peg.8   13 NAKIRIFSFVPPK   25 (41)
Q Consensus        13 nakirifsfvppk   25 (41)
                      |.-||+..|-|-+
T Consensus        83 ~~YVRliG~D~~~   95 (109)
T d1rbli_          83 DCYIRVAGFDNIK   95 (109)
T ss_dssp             TSEEEEEEEETTT
T ss_pred             CCEEEEEEEECCC
T ss_conf             6778999980877


No 4  
>d1tzaa_ b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 70863]}
Probab=2.92  E-value=1.9e+02  Score=11.36  Aligned_cols=20  Identities=35%  Similarity=0.552  Sum_probs=16.3

Q ss_pred             CCCCCEEEEEEEECCCCCCC
Q ss_conf             98631068999831898655
Q 537021.9.peg.8    9 NHPFNAKIRIFSFVPPKASH   28 (41)
Q Consensus         9 nhpfnakirifsfvppkash   28 (41)
                      ..+|.+.|--|++..|.+-|
T Consensus       105 g~~F~v~Ip~F~L~~P~~ln  124 (132)
T d1tzaa_         105 GEHFNAIIKPFRLATPGLLH  124 (132)
T ss_dssp             CCEEEEEEEEEEEECTTSSC
T ss_pred             CCEEEEECCCEECCCCCHHH
T ss_conf             99999988787877980554


No 5  
>d1xvsa_ b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]}
Probab=2.44  E-value=2.1e+02  Score=11.06  Aligned_cols=17  Identities=24%  Similarity=0.532  Sum_probs=11.0

Q ss_pred             CCCCCEEEEEEEECCCC
Q ss_conf             98631068999831898
Q 537021.9.peg.8    9 NHPFNAKIRIFSFVPPK   25 (41)
Q Consensus         9 nhpfnakirifsfvppk   25 (41)
                      ...|.+.|--|++..|.
T Consensus       107 g~~F~v~Ip~F~L~~P~  123 (124)
T d1xvsa_         107 GESFTVEIEPFRLAVPH  123 (124)
T ss_dssp             SCEEEEEEEEEEEECCC
T ss_pred             CCEEEEECCCEECCCCC
T ss_conf             99999988788863898


No 6  
>d2pp6a1 b.106.1.2 (A:1-93) Gifsy-2 prophage protein STM1035 {Salmonella typhimurium [TaxId: 90371]}
Probab=2.39  E-value=2.2e+02  Score=11.03  Aligned_cols=10  Identities=30%  Similarity=0.458  Sum_probs=5.3

Q ss_pred             CCCCEEEEEE
Q ss_conf             8631068999
Q 537021.9.peg.8   10 HPFNAKIRIF   19 (41)
Q Consensus        10 hpfnakirif   19 (41)
                      +-||.|++||
T Consensus        80 ~~~ngk~~i~   89 (93)
T d2pp6a1          80 RRFNGKPQLT   89 (93)
T ss_dssp             EEETTEEEEE
T ss_pred             EEECCCEEEE
T ss_conf             9878938999


No 7  
>d1qd1a1 d.58.34.1 (A:2-180) Formiminotransferase domain of formiminotransferase-cyclodeaminase. {Pig (Sus scrofa) [TaxId: 9823]}
Probab=2.37  E-value=2.2e+02  Score=11.02  Aligned_cols=23  Identities=22%  Similarity=0.573  Sum_probs=18.2

Q ss_pred             EECCCCCCCCEEEEEEEECCCCC
Q ss_conf             54148986310689998318986
Q 537021.9.peg.8    4 TNISGNHPFNAKIRIFSFVPPKA   26 (41)
Q Consensus         4 tnisgnhpfnakirifsfvppka   26 (41)
                      ++-+|.||--.-+-...|+|-+.
T Consensus        75 ~~H~G~HPR~GavDv~PfiPl~~   97 (179)
T d1qd1a1          75 SRHHGEHPRMGALDVCPFIPVRG   97 (179)
T ss_dssp             GGCCCSSCCSBSEEEEEEEEEES
T ss_pred             HHCCCCCCCCCCCCEEEEECCCC
T ss_conf             31345588675313366415789


No 8  
>d1xq4a_ b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 520]}
Probab=2.27  E-value=2.3e+02  Score=10.94  Aligned_cols=17  Identities=29%  Similarity=0.565  Sum_probs=0.0

Q ss_pred             CCCCCEEEEEEEECCCC
Q ss_conf             98631068999831898
Q 537021.9.peg.8    9 NHPFNAKIRIFSFVPPK   25 (41)
Q Consensus         9 nhpfnakirifsfvppk   25 (41)
                      +.+|++.|--|.+.+|.
T Consensus       106 g~~f~v~Ip~F~L~~P~  122 (123)
T d1xq4a_         106 GIPFEVPIAEFLLAMPR  122 (123)
T ss_dssp             SCEEEEEEEEEEEECTT
T ss_pred             CCEEEEECCCEECCCCC
T ss_conf             99999987786857998


No 9  
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.19  E-value=2e+02  Score=11.22  Aligned_cols=11  Identities=64%  Similarity=1.041  Sum_probs=0.0

Q ss_pred             EEEEEEECCCC
Q ss_conf             68999831898
Q 537021.9.peg.8   15 KIRIFSFVPPK   25 (41)
Q Consensus        15 kirifsfvppk   25 (41)
                      |-|-+.|.|||
T Consensus        36 KsRKi~y~Ppk   46 (47)
T d3cx5d2          36 KTRKFVFNPPK   46 (47)
T ss_dssp             HTCEEEECCCC
T ss_pred             CCCEEEECCCC
T ss_conf             34226637999


No 10 
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.15  E-value=2e+02  Score=11.17  Aligned_cols=11  Identities=45%  Similarity=0.866  Sum_probs=0.0

Q ss_pred             EEEEEEECCCC
Q ss_conf             68999831898
Q 537021.9.peg.8   15 KIRIFSFVPPK   25 (41)
Q Consensus        15 kirifsfvppk   25 (41)
                      |-|-+.|.|||
T Consensus        36 KsrKi~y~ppk   46 (46)
T d1ppjd2          36 KSRKLAYRPPK   46 (46)
T ss_dssp             HTCEEEECCCC
T ss_pred             CCCEEEECCCC
T ss_conf             36325407989


Done!