RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.813_1
         (41 letters)



>gnl|CDD|38837 KOG3631, KOG3631, KOG3631, Alpha-parvin and related focal adhesion
           proteins [Cytoskeleton].
          Length = 365

 Score = 26.5 bits (58), Expect = 1.6
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 4   TNISGNHPFNAKIRIFSFVPPKASHHKSIFFSFVN 38
           T++ G    +A   +F   P K +  K    +FVN
Sbjct: 233 TDLDGRPERDAFDTLFDHAPDKLNVVKKSLITFVN 267


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.331    0.140    0.443 

Gapped
Lambda     K      H
   0.267   0.0559    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 524,730
Number of extensions: 15410
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 2
Length of query: 41
Length of database: 6,263,737
Length adjustment: 15
Effective length of query: 26
Effective length of database: 5,939,602
Effective search space: 154429652
Effective search space used: 154429652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 51 (23.8 bits)