RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.813_1
         (41 letters)



>gnl|CDD|149357 pfam08245, Mur_ligase_M, Mur ligase middle domain. 
          Length = 188

 Score = 24.6 bits (54), Expect = 6.3
 Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 9/33 (27%)

Query: 2   IITNISGNHP---------FNAKIRIFSFVPPK 25
           +ITNIS +H            AK  IF  +P  
Sbjct: 76  VITNISPDHLDYHGTMENYAAAKAEIFEGLPED 108


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.331    0.140    0.443 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 649,065
Number of extensions: 21512
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 3
Length of query: 41
Length of database: 5,994,473
Length adjustment: 15
Effective length of query: 26
Effective length of database: 5,670,353
Effective search space: 147429178
Effective search space used: 147429178
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 50 (23.2 bits)