BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.813_1
         (41 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.813_1 
          Length = 41

 Score = 81.6 bits (200), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/41 (100%), Positives = 41/41 (100%)

Query: 1  MIITNISGNHPFNAKIRIFSFVPPKASHHKSIFFSFVNISC 41
          MIITNISGNHPFNAKIRIFSFVPPKASHHKSIFFSFVNISC
Sbjct: 1  MIITNISGNHPFNAKIRIFSFVPPKASHHKSIFFSFVNISC 41


>gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 497

 Score = 23.5 bits (49), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 12  FNAKIRIFSFVPPKAS 27
           FNAK+R+F  + PK S
Sbjct: 227 FNAKMRLFEELLPKES 242


>gi|254780915|ref|YP_003065328.1| oligoendopeptidase F [Candidatus Liberibacter asiaticus str. psy62]
          Length = 626

 Score = 20.0 bits (40), Expect = 8.3,   Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 9   NHPFNAKIRIFSFV 22
           +H FN    IFSF+
Sbjct: 246 SHTFNKSSHIFSFI 259


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.331    0.140    0.443 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,854
Number of Sequences: 1233
Number of extensions: 556
Number of successful extensions: 5
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 41
length of database: 328,796
effective HSP length: 15
effective length of query: 26
effective length of database: 310,301
effective search space:  8067826
effective search space used:  8067826
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 31 (16.5 bits)