HHsearch alignment for GI: peg_816 and conserved domain: TIGR00608

>TIGR00608 radc DNA repair protein RadC; InterPro: IPR001405 RadC is a DNA repair protein found in many bacteria. They share a region of similarity at the C-terminus that contains two perfectly conserved histidine residues.; GO: 0006281 DNA repair.
Probab=100.00  E-value=8.2e-43  Score=273.46  Aligned_cols=97  Identities=47%  Similarity=0.761  Sum_probs=96.0

Q ss_pred             CCCCCCCCEEEEEEEEECCCCEEEECHHHHHHHHHHHCCCEEEEEEECCCC--CCCCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             951568877348998540463589329999999997319689999556898--988147789999999999976498899
Q 537021.9.peg.8    1 LFLDKHNILIADEVQSRGTIDHVPVYIREIVQRCLELSATSIILVHNHPSG--NPNPSDADINMTQNIITTLNPLNIIVH   78 (97)
Q Consensus         1 l~Ld~~~~li~~e~i~~Gt~~~~~v~~r~i~~~al~~~A~~vilaHNHPsG--~~~PS~~Di~~T~~l~~a~~~l~i~ll   78 (97)
T Consensus       125 lfLD~~nrli~~~~~~~Gt~~~v~v~PREi~keA~k~~A~alI~aHNHPSGGl~p~PS~~D~~~T~~l~~aae~l~i~lL  204 (223)
T TIGR00608       125 LFLDLKNRLIAKEVVFIGTVNHVLVHPREIIKEALKLSASALILAHNHPSGGLEPSPSKEDILITERLLKAAELLGIELL  204 (223)
T ss_pred             EEECCCCCEECCEEEEEEEEEEEEECCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             87168541010024565412422366507877887617430255653755298998687779999999988866286241


Q ss_pred             EEEEECCCCEEEHHHCCCC
Q ss_conf             7999859959974525899
Q 537021.9.peg.8   79 DHIIIGKDAFVSFKGLRII   97 (97)
Q Consensus        79 DHiIv~~~~~~S~re~gll   97 (97)
T Consensus       205 DHLviG~g~~~Sfre~g~L  223 (223)
T TIGR00608       205 DHLVIGKGKYVSFREEGLL  223 (223)
T ss_pred             EEEEECCCCEECHHCCCCC
T ss_conf             1778538741214500689