HHsearch alignment for GI: peg_816 and conserved domain: pfam04002

>pfam04002 DUF2466 Protein of unknown function (DUF2466). This family was named initially with reference to the E. coli radC102 mutation which suggested that RadC was involved in repair of DNA lesions. However the relevant mutation has subsequently been shown to be in recG, where radC is in fact an allele of recG. In addition, a personal communication from Claverys, J-P, et al, indicates a total failure of all attempts to characterize a radiation-related function for RadC in Streptococcus pneumoniae, suggesting that it is not involved in repair of DNA lesions, in recombination during transformation, in gene conversion, nor in mismatch repair.
Probab=100.00  E-value=1.9e-39  Score=253.65  Aligned_cols=97  Identities=45%  Similarity=0.711  Sum_probs=95.8

Q ss_pred             CCCCCCCCEEEEEEEEECCCCEEEECHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             95156887734899854046358932999999999731968999955689898814778999999999997649889979
Q 537021.9.peg.8    1 LFLDKHNILIADEVQSRGTIDHVPVYIREIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDH   80 (97)
Q Consensus         1 l~Ld~~~~li~~e~i~~Gt~~~~~v~~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDH   80 (97)
T Consensus        27 l~Ld~~~~li~~~~i~~Gt~~~~~v~pReI~~~Al~~~A~~iIl~HNHPSG~~~PS~~D~~~T~~l~~a~~~l~I~llDH  106 (123)
T pfam04002        27 LYLDTQNRLIAVEEVSEGTVNSASVHPREIFKRALRLNAAAVILAHNHPSGDPTPSQADIELTKRLKEAGELLGIRLLDH  106 (123)
T ss_pred             EEECCCCCEEEEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             99879998898999735788467887999999999838986999831899989958879999999999997689879738


Q ss_pred             EEECCCCEEEHHHCCCC
Q ss_conf             99859959974525899
Q 537021.9.peg.8   81 IIIGKDAFVSFKGLRII   97 (97)
Q Consensus        81 iIv~~~~~~S~re~gll   97 (97)
T Consensus       107 iIv~~~~~~S~~e~g~l  123 (123)
T pfam04002       107 IIIGDGGYFSFAEEGLL  123 (123)
T ss_pred             EEEECCCEEEHHHCCCC
T ss_conf             99969939985534789