HHsearch alignment for GI: peg_816 and conserved domain: pfam04002
>pfam04002 DUF2466 Protein of unknown function (DUF2466). This family was named initially with reference to the E. coli radC102 mutation which suggested that RadC was involved in repair of DNA lesions. However the relevant mutation has subsequently been shown to be in recG, where radC is in fact an allele of recG. In addition, a personal communication from Claverys, J-P, et al, indicates a total failure of all attempts to characterize a radiation-related function for RadC in Streptococcus pneumoniae, suggesting that it is not involved in repair of DNA lesions, in recombination during transformation, in gene conversion, nor in mismatch repair.
Probab=100.00 E-value=1.9e-39 Score=253.65 Aligned_cols=97 Identities=45% Similarity=0.711 Sum_probs=95.8
Q ss_pred CCCCCCCCEEEEEEEEECCCCEEEECHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 95156887734899854046358932999999999731968999955689898814778999999999997649889979
Q 537021.9.peg.8 1 LFLDKHNILIADEVQSRGTIDHVPVYIREIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDH 80 (97)
Q Consensus 1 l~Ld~~~~li~~e~i~~Gt~~~~~v~~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDH 80 (97)
T Consensus 27 l~Ld~~~~li~~~~i~~Gt~~~~~v~pReI~~~Al~~~A~~iIl~HNHPSG~~~PS~~D~~~T~~l~~a~~~l~I~llDH 106 (123)
T pfam04002 27 LYLDTQNRLIAVEEVSEGTVNSASVHPREIFKRALRLNAAAVILAHNHPSGDPTPSQADIELTKRLKEAGELLGIRLLDH 106 (123)
T ss_pred EEECCCCCEEEEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99879998898999735788467887999999999838986999831899989958879999999999997689879738
Q ss_pred EEECCCCEEEHHHCCCC
Q ss_conf 99859959974525899
Q 537021.9.peg.8 81 IIIGKDAFVSFKGLRII 97 (97)
Q Consensus 81 iIv~~~~~~S~re~gll 97 (97)
T Consensus 107 iIv~~~~~~S~~e~g~l 123 (123)
T pfam04002 107 IIIGDGGYFSFAEEGLL 123 (123)
T ss_pred EEEECCCEEEHHHCCCC
T ss_conf 99969939985534789