Query 537021.9.peg.816_1 Match_columns 97 No_of_seqs 103 out of 1329 Neff 5.7 Searched_HMMs 33803 Date Wed May 25 01:43:33 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_816.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2qlc_A DNA repair protein RAD 100.0 6E-38 1.8E-42 244.5 11.7 97 1-97 30-126 (126) 2 >1oi0_A AF2198, hypothetical p 93.2 0.1 3E-06 31.2 3.8 36 28-63 52-87 (124) 3 >2kcq_A MOV34/MPN/PAD-1 family 89.3 0.71 2.1E-05 26.2 4.8 36 27-62 64-99 (153) 4 >2kks_A Uncharacterized protei 84.5 1.5 4.5E-05 24.2 4.3 47 16-62 48-97 (146) 5 >1gvf_A Tagatose-bisphosphate 72.3 8.2 0.00024 19.9 6.5 49 28-81 87-135 (286) 6 >1q79_A Poly(A) polymerase alp 59.9 11 0.00032 19.2 3.6 27 49-75 25-51 (198) 7 >3c4u_A Fructose-bisphosphate 59.2 15 0.00044 18.4 6.5 49 28-81 87-135 (307) 8 >1rvg_A Fructose-1,6-bisphosph 53.8 18 0.00055 17.9 6.5 50 27-81 84-133 (305) 9 >2isw_A Putative fructose-1,6- 52.9 19 0.00056 17.8 6.3 50 27-81 87-136 (323) 10 >1v8f_A Pantoate-beta-alanine 49.6 14 0.00043 18.5 2.8 65 12-76 17-83 (179) 11 >3lot_A Uncharacterized protei 49.1 6.1 0.00018 20.7 0.9 51 22-72 26-81 (314) 12 >1iho_A Pantoate--beta-alanine 46.9 23 0.00067 17.3 3.5 65 13-77 23-89 (185) 13 >3chv_A Prokaryotic domain of 46.1 11 0.00034 19.1 1.9 51 22-72 28-82 (284) 14 >1oxj_A RNA-binding protein sm 42.6 21 0.00061 17.6 2.7 37 40-76 27-65 (109) 15 >3c6c_A 3-keto-5-aminohexanoat 39.0 10 0.00031 19.3 0.8 49 22-70 42-95 (316) 16 >3e49_A Uncharacterized protei 38.0 9.2 0.00027 19.6 0.4 51 22-72 26-81 (311) 17 >2wvv_A Alpha-L-fucosidase; al 34.8 37 0.0011 16.1 4.3 59 20-78 73-142 (351) 18 >3bho_A Cleavage and polyadeny 34.1 33 0.00097 16.4 2.7 50 35-85 57-124 (208) 19 >3elf_A Fructose-bisphosphate 33.6 39 0.0011 16.0 4.2 50 27-81 113-162 (349) 20 >1dos_A Aldolase class II; lya 32.0 41 0.0012 15.8 5.5 51 27-82 126-176 (358) 21 >1qz9_A Kynureninase; kynureni 29.9 45 0.0013 15.6 3.4 46 26-78 91-137 (210) 22 >3cog_A Cystathionine gamma-ly 26.6 51 0.0015 15.2 3.3 44 28-78 141-185 (261) 23 >2dkj_A Serine hydroxymethyltr 25.8 53 0.0016 15.2 5.3 44 28-78 120-163 (244) 24 >3cov_A Pantothenate synthetas 25.0 55 0.0016 15.1 3.7 65 12-76 33-100 (195) 25 >1o69_A Aminotransferase; stru 24.1 57 0.0017 15.0 4.1 62 11-79 93-154 (394) 26 >2jx0_A ARF GTPase-activating 24.0 57 0.0017 14.9 3.1 24 50-73 6-37 (135) No 1 >>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: DNA; 2.30A {Chlorobium tepidum tls} (A:) Probab=100.00 E-value=6e-38 Score=244.46 Aligned_cols=97 Identities=37% Similarity=0.587 Sum_probs=95.9 Q ss_pred CCCCCCCCEEEEEEEEECCCCEEEECHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE Q ss_conf 95156887734899854046358932999999999731968999955689898814778999999999997649889979 Q 537021.9.peg.8 1 LFLDKHNILIADEVQSRGTIDHVPVYIREIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDH 80 (97) Q Consensus 1 l~Ld~~~~li~~e~i~~Gt~~~~~v~~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDH 80 (97) +|||++|++++++.+++||++++.++||+||++||+.+|+++|++||||||+++||++|+++|++|+++|+.+||+|+|| T Consensus 30 l~Ld~~~~ii~~~~i~~Gt~~~~~v~~R~i~~~al~~~A~~vil~HNHPsG~~~PS~~D~~~T~~l~~a~~~l~I~llDH 109 (126) T 2qlc_A 30 LFLSTKNQILRHETITIGTLTASLIHPREIFKAAIRESAHSIILVHNHPSGDVQPSNADKQVTSILKKAGDLLQIELLDH 109 (126) T ss_dssp EEECTTCBEEEEEEEEESSCCGGGCCHHHHHHHHHHTTCSEEEEEEECSSSCCSCCHHHHHHHHHHHHHHHHHTCEEEEE T ss_pred EEECCCCCEEEEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE T ss_conf 99879998878999715777457883999999999816975999987477889978667999999999997689889769 Q ss_pred EEECCCCEEEHHHCCCC Q ss_conf 99859959974525899 Q 537021.9.peg.8 81 IIIGKDAFVSFKGLRII 97 (97) Q Consensus 81 iIv~~~~~~S~re~gll 97 (97) +|||+++||||||+|+| T Consensus 110 iIi~~~~~~S~~e~gll 126 (126) T 2qlc_A 110 VIVGNNDWFSFRDHALL 126 (126) T ss_dssp EEECSSCEEETTTTTCC T ss_pred EEEECCEEEEHHHCCCC T ss_conf 99929909986635789 No 2 >>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} (A:) Probab=93.24 E-value=0.1 Score=31.19 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=31.2 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHH Q ss_conf 999999997319689999556898988147789999 Q 537021.9.peg.8 28 REIVQRCLELSATSIILVHNHPSGNPNPSDADINMT 63 (97) Q Consensus 28 r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T 63 (97) ...+..+...+-.-+-..|-||+|.+.||..|++.- T Consensus 52 ~~~~~~~~~~~~~~vG~~HSHP~~~~~PS~~D~~~~ 87 (124) T 1oi0_A 52 AVIHLDMLPIGMKVFGTVHSHPSPSCRPSEEDLSLF 87 (124) T ss_dssp ---------CCCEEEEEEEEESSSCCSCCHHHHHHH T ss_pred EEEEECHHHCCCEEEEEEEECCCCCCCCCHHHHHHH T ss_conf 334506111688089999858999897798999740 No 3 >>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855} (A:) Probab=89.31 E-value=0.71 Score=26.18 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=30.5 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHH Q ss_conf 999999999731968999955689898814778999 Q 537021.9.peg.8 27 IREIVQRCLELSATSIILVHNHPSGNPNPSDADINM 62 (97) Q Consensus 27 ~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~ 62 (97) -.++.+.+-..+-.-+-..|-||.+.+.||..|+.. T Consensus 64 ~~~~~~~~~~~g~~~VG~~HSHP~~~~~pS~~D~~~ 99 (153) T 2kcq_A 64 YRAADAAAQEQGLDVVGVYHSHPDHPARPSATDLEE 99 (153) T ss_dssp HHHHHHHHHHHTCEEEEEEEECSSSSSSCCHHHHHT T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHH T ss_conf 999999877559728999972899999989999996 No 4 >>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiative; NMR {Desulfitobacterium hafniense Y51} (A:) Probab=84.50 E-value=1.5 Score=24.22 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=36.9 Q ss_pred EECCCCEEEECHHHHHH---HHHHHCCCEEEEEEECCCCCCCCCHHHHHH Q ss_conf 54046358932999999---999731968999955689898814778999 Q 537021.9.peg.8 16 SRGTIDHVPVYIREIVQ---RCLELSATSIILVHNHPSGNPNPSDADINM 62 (97) Q Consensus 16 ~~Gt~~~~~v~~r~i~~---~al~~~A~~vilaHNHPsG~~~PS~~Di~~ 62 (97) ..++.++..+++++..+ .+...+-.-+-..|-||.+.+.||..|+.. T Consensus 48 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vG~~HSHP~~~~~pS~~D~~~ 97 (146) T 2kks_A 48 LDQSPEHFSMDPREQLTAVKDMRKNGWVMLGNFHSHPATPARPSAEDKRL 97 (146) T ss_dssp CSCCSSSCCCCHHHHHHHHHHHHHHTCEEEEEEEEESSSCSSCCHHHHTT T ss_pred CCCCCCEEEECHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHH T ss_conf 78898479988899999999997489879999974999999899899997 No 5 >>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} (A:) Probab=72.29 E-value=8.2 Score=19.92 Aligned_cols=49 Identities=10% Similarity=0.269 Sum_probs=44.1 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 999999997319689999556898988147789999999999976498899799 Q 537021.9.peg.8 28 REIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDHI 81 (97) Q Consensus 28 r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDHi 81 (97) -+..++|++.+-+++.+ -|+..|-++.+..|+++.+.+...|+.+---+ T Consensus 87 ~e~i~~ai~~GftSVMi-----DgS~lp~eeNi~~T~evv~~ah~~gv~VEaEl 135 (286) T 1gvf_A 87 LDDIRRKVHAGVRSAMI-----DGSHFPFAENVKLVKSVVDFCHSQDCSVEAEL 135 (286) T ss_dssp HHHHHHHHHTTCCEEEE-----CCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEE T ss_pred HHHHHHHHCCCCCEEEE-----ECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 99999985579975887-----48978999999999999998574231487864 No 6 >>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase; HET: 3AT; 2.15A {Bos taurus} (A:1-50,A:215-362) Probab=59.89 E-value=11 Score=19.24 Aligned_cols=27 Identities=30% Similarity=0.559 Sum_probs=22.7 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC Q ss_conf 898988147789999999999976498 Q 537021.9.peg.8 49 PSGNPNPSDADINMTQNIITTLNPLNI 75 (97) Q Consensus 49 PsG~~~PS~~Di~~T~~l~~a~~~l~i 75 (97) |-....|.+.|...|++|.++++..|= T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~P 51 (198) T 1q79_A 25 PISLAAPKETDXLLTQKLVETLKPFGP 51 (198) T ss_dssp CSCCCCCCHHHHHHHHHHHHHHGGGTS T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC T ss_conf 843589986889988999999987183 No 7 >>3c4u_A Fructose-bisphosphate aldolase; FBP aldolase, class II, zinc, glycolysis, lyase, metal- binding; 1.83A {Helicobacter pylori} PDB: 3c52_A* 3c56_A* (A:) Probab=59.24 E-value=15 Score=18.39 Aligned_cols=49 Identities=10% Similarity=0.293 Sum_probs=43.9 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 999999997319689999556898988147789999999999976498899799 Q 537021.9.peg.8 28 REIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDHI 81 (97) Q Consensus 28 r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDHi 81 (97) .+.++.|++.+-+++.+ -|+..|=++.++.|+++.+.+...|+.+---+ T Consensus 87 ~e~i~~ai~~GftSVMi-----DgS~lp~eeNi~~T~evv~~ah~~gv~VEaEl 135 (307) T 3c4u_A 87 FESCEKAVKAGFTSVMI-----DASHHAFEENLELTSKVVKMAHNAGVSVEAEL 135 (307) T ss_dssp HHHHHHHHHHTCSEEEE-----CCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEE T ss_pred HHHHHHHHHCCCCEEEE-----CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 99999998579864886-----18856789999999999999997598678864 No 8 >>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} (A:) Probab=53.78 E-value=18 Score=17.85 Aligned_cols=50 Identities=16% Similarity=0.307 Sum_probs=44.2 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 9999999997319689999556898988147789999999999976498899799 Q 537021.9.peg.8 27 IREIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDHI 81 (97) Q Consensus 27 ~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDHi 81 (97) -.+.++.+++.+-+++.+ -|+..|=++.++.|+++.+.+...|+.+---+ T Consensus 84 ~~e~i~~ai~~GftSvMi-----DgS~lp~eeNi~~T~evv~~a~~~gv~VE~El 133 (305) T 1rvg_A 84 SYESVLRALRAGFTSVMI-----DKSHEDFETNVRETRRVVEAAHAVGVTVEAEL 133 (305) T ss_dssp SHHHHHHHHHTTCSEEEE-----CCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEE T ss_pred CHHHHHHHHHCCCCEEEE-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCE T ss_conf 877776876468766886-----78622377789999999998788654011000 No 9 >>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3gay_A* 3gak_A* 3gb6_A* (A:) Probab=52.91 E-value=19 Score=17.77 Aligned_cols=50 Identities=16% Similarity=0.393 Sum_probs=44.3 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 9999999997319689999556898988147789999999999976498899799 Q 537021.9.peg.8 27 IREIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDHI 81 (97) Q Consensus 27 ~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDHi 81 (97) -.+.++.|++.+-+||.+ -|+..|=++.++.|+++.+.+...|+.+---+ T Consensus 87 ~~e~i~~ai~~GftSVMi-----DgS~lp~eeNi~~T~evv~~ah~~gv~VEaEl 136 (323) T 2isw_A 87 TLESVKMAIDLGFSSVMI-----DASHHPFDENVRITKEVVAYAHARSVSVEAEL 136 (323) T ss_dssp SHHHHHHHHHTTCSEEEE-----CCTTSCHHHHHHHHHHHHHHHHTTTCEEEEEE T ss_pred CHHHHHHHHHCCCCEEEE-----ECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 799999997548856885-----07879769899999999986444571489865 No 10 >>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} (A:1-179) Probab=49.64 E-value=14 Score=18.49 Aligned_cols=65 Identities=12% Similarity=-0.019 Sum_probs=46.1 Q ss_pred EEEEEECCCCEEEECHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHH--HHHHHHHHHHHHCCCE Q ss_conf 8998540463589329999999997319689999556898988147789--9999999999764988 Q 537021.9.peg.8 12 DEVQSRGTIDHVPVYIREIVQRCLELSATSIILVHNHPSGNPNPSDADI--NMTQNIITTLNPLNII 76 (97) Q Consensus 12 ~e~i~~Gt~~~~~v~~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di--~~T~~l~~a~~~l~i~ 76 (97) ...++.|+-|....-=+.++++|-..+...++....||+....+...-. ...++-.+.++.+|+. T Consensus 17 ~~Vv~iG~FDgiH~GH~~ll~~Ak~~~~~~vV~f~~~p~~~~~~~~~~~~l~~~e~k~~ll~~~gVD 83 (179) T 1v8f_A 17 EGVGFVPTMGYLHRGHLALVERARRENPFVVVSVFVNPLQFGPGEDYHRYPRDLERDRALLQEAGVD 83 (179) T ss_dssp SCEEEEEECSSCCHHHHHHHHHHHHHCSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHTTCS T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHCCCC T ss_conf 9889986876075899999999987489789999846877897310221262177778899867996 No 11 >>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus} (A:) Probab=49.10 E-value=6.1 Score=20.67 Aligned_cols=51 Identities=18% Similarity=0.263 Sum_probs=37.5 Q ss_pred EEEECHHHHHHHHHHHCCCEEEEEEECCCC--CCCCCHH--HH-HHHHHHHHHHHH Q ss_conf 589329999999997319689999556898--9881477--89-999999999976 Q 537021.9.peg.8 22 HVPVYIREIVQRCLELSATSIILVHNHPSG--NPNPSDA--DI-NMTQNIITTLNP 72 (97) Q Consensus 22 ~~~v~~r~i~~~al~~~A~~vilaHNHPsG--~~~PS~~--Di-~~T~~l~~a~~~ 72 (97) ..++-|-||.+.|..+-..+--++|-|+-. +-+||.. +. ++...+++.|.. T Consensus 26 ~lP~TpeEia~~A~~c~~AGAsivHlH~Rdp~dG~~s~d~~~y~eii~~Ir~~~d~ 81 (314) T 3lot_A 26 YLPVTPDQIVEEAVKAAEAGAGXVHIHARDPKDGRPTTDVEVFRYICREIKKQSDV 81 (314) T ss_dssp TSCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHHHCCC T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 99899999999999999825638997725777898178989999999999861897 No 12 >>1iho_A Pantoate--beta-alanine ligase; rossman fold, dimer, APO, high, KSMKS, flexible domains, multidomain; 1.70A {Escherichia coli} (A:1-185) Probab=46.91 E-value=23 Score=17.31 Aligned_cols=65 Identities=14% Similarity=0.088 Sum_probs=49.9 Q ss_pred EEEEECCCCEEEECHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHH--HHHHHHHHHCCCEE Q ss_conf 998540463589329999999997319689999556898988147789999--99999997649889 Q 537021.9.peg.8 13 EVQSRGTIDHVPVYIREIVQRCLELSATSIILVHNHPSGNPNPSDADINMT--QNIITTLNPLNIIV 77 (97) Q Consensus 13 e~i~~Gt~~~~~v~~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T--~~l~~a~~~l~i~l 77 (97) ..++.|+-|....-=+.+++.|-..+...++....+|+-...+.....-+| ++-....+..++.. T Consensus 23 ~vv~~G~FDglH~GH~~ll~~Ak~~g~~~vv~~~~~~~~~~~~~~~~~~lt~~er~~~l~~~~gVd~ 89 (185) T 1iho_A 23 RVALVPTMGNLHDGHMKLVDEAKARADVVVVSIFVNPMQFDRPEDLARYPRTLQEDCEKLNKRKVDL 89 (185) T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHHCSEEEEEECCCGGGCSSHHHHHHSCCCHHHHHHHHHHTTCSE T ss_pred CEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCE T ss_conf 0999758740648999999999986990999995377767984568877999899999998769989 No 13 >>3chv_A Prokaryotic domain of unknown function (DUF849) with A TIM barrel fold; YP_164873.1; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A (A:) Probab=46.13 E-value=11 Score=19.08 Aligned_cols=51 Identities=22% Similarity=0.350 Sum_probs=40.2 Q ss_pred EEEECHHHHHHHHHHHCCCEEEEEEEC---CCCCCCCCHHHH-HHHHHHHHHHHH Q ss_conf 589329999999997319689999556---898988147789-999999999976 Q 537021.9.peg.8 22 HVPVYIREIVQRCLELSATSIILVHNH---PSGNPNPSDADI-NMTQNIITTLNP 72 (97) Q Consensus 22 ~~~v~~r~i~~~al~~~A~~vilaHNH---PsG~~~PS~~Di-~~T~~l~~a~~~ 72 (97) ..++-|.||.+.|..+-..+--++|-| |.|.+....++. ++...+++.|.- T Consensus 28 ~lP~TpeEia~~a~~c~~AGAaivHlH~R~~dG~~s~d~~~y~e~i~~Ir~~~pd 82 (284) T 3chv_A 28 AVPITVSEQVESTQEAFEAGAAIAHCHVRNDDGTPSSDPDRFARLTEGLHTHCPG 82 (284) T ss_dssp TCCCSHHHHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTT T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 9989989999999999981886899873289949777889999999999986682 No 14 >>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} (A:65-173) Probab=42.56 E-value=21 Score=17.57 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=29.7 Q ss_pred CEEEEEEECCCCCCCCCHHHH--HHHHHHHHHHHHCCCE Q ss_conf 689999556898988147789--9999999999764988 Q 537021.9.peg.8 40 TSIILVHNHPSGNPNPSDADI--NMTQNIITTLNPLNII 76 (97) Q Consensus 40 ~~vilaHNHPsG~~~PS~~Di--~~T~~l~~a~~~l~i~ 76 (97) +.+++.--.|+|...|-++|+ ++|+-+-+.|..+-+. T Consensus 27 ~~Iv~TPmKp~~~~~~~eeDip~qFtkVmgkvct~L~~~ 65 (109) T 1oxj_A 27 TNIVLTPMKPLESPGPPEENIGLRFLKVIDIVTNTLQQD 65 (109) T ss_dssp HTTTTSCCCCTTCCSCGGGCHHHHHHHHHHHHHHHHHTC T ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC T ss_conf 899714650357899961112168999999999999862 No 15 >>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; YP_293392.1, prokaryotic protein of unknown function (DUF849), structural genomics; HET: MSE; 1.72A {Ralstonia eutropha JMP134} (A:) Probab=39.00 E-value=10 Score=19.32 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=34.8 Q ss_pred EEEECHHHHHHHHHHHCCCEEEEEEECCCC--CCCCCH--HHH-HHHHHHHHHH Q ss_conf 589329999999997319689999556898--988147--789-9999999999 Q 537021.9.peg.8 22 HVPVYIREIVQRCLELSATSIILVHNHPSG--NPNPSD--ADI-NMTQNIITTL 70 (97) Q Consensus 22 ~~~v~~r~i~~~al~~~A~~vilaHNHPsG--~~~PS~--~Di-~~T~~l~~a~ 70 (97) .+++-|.||.+.|..+-..+--++|-|+-. +-.||. ++. ++...+++.| T Consensus 42 ~lP~TpeEIa~~A~~c~~AGAaivHlH~Rd~~dG~~s~d~~~y~eii~~IR~~~ 95 (316) T 3c6c_A 42 SXPITPAQIADACVEAAKAGASVAHIHVRDPKTGGGSRDPVLFKEVVDRVRSSG 95 (316) T ss_dssp TCCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHTTT T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC T ss_conf 998998999999999998187389987558888996789999999999999873 No 16 >>3e49_A Uncharacterized protein DUF849 with A TIM barrel fold; YP_556190.1; HET: MSE; 1.75A {Burkholderia xenovorans LB400} (A:) Probab=38.00 E-value=9.2 Score=19.64 Aligned_cols=51 Identities=16% Similarity=0.315 Sum_probs=38.1 Q ss_pred EEEECHHHHHHHHHHHCCCEEEEEEECCCC--CCCCCHH--HH-HHHHHHHHHHHH Q ss_conf 589329999999997319689999556898--9881477--89-999999999976 Q 537021.9.peg.8 22 HVPVYIREIVQRCLELSATSIILVHNHPSG--NPNPSDA--DI-NMTQNIITTLNP 72 (97) Q Consensus 22 ~~~v~~r~i~~~al~~~A~~vilaHNHPsG--~~~PS~~--Di-~~T~~l~~a~~~ 72 (97) ..++-|.||.+.|..+-..+--++|-|+-. +-+||.. +. ++..++++.|.. T Consensus 26 ~lP~TpeEia~~a~~c~~AGAsivHlH~Rd~~dG~~s~d~~~y~eii~~IR~~~d~ 81 (311) T 3e49_A 26 YLPVTPDEVAQASIGAAEAGAAVIHLHARDPRDGRPTQDPAAFAEFLPRIKSNTDA 81 (311) T ss_dssp TSCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTHHHHHHHHCCC T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 99899899999999999818738997735777799078999999999999860896 No 17 >>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A* (A:1-351) Probab=34.80 E-value=37 Score=16.07 Aligned_cols=59 Identities=12% Similarity=0.187 Sum_probs=46.5 Q ss_pred CCEEEECHHHHHHHHHHHCCCEEEEEEECCCC-------CCC----CCHHHHHHHHHHHHHHHHCCCEEE Q ss_conf 63589329999999997319689999556898-------988----147789999999999976498899 Q 537021.9.peg.8 20 IDHVPVYIREIVQRCLELSATSIILVHNHPSG-------NPN----PSDADINMTQNIITTLNPLNIIVH 78 (97) Q Consensus 20 ~~~~~v~~r~i~~~al~~~A~~vilaHNHPsG-------~~~----PS~~Di~~T~~l~~a~~~l~i~ll 78 (97) -+...++|.+.++.+-..+|..+|+.=-|=.| ... .+.....+.+.+.+||+.-||++- T Consensus 73 f~p~~fD~~~wv~~~k~aGakyvvltakHHdGf~lw~S~~~~~~~~~~~~~rDiv~el~~A~rk~Glk~g 142 (351) T 2wvv_A 73 WNPTKFDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKRDILGELVKAYNDEGIDVH 142 (351) T ss_dssp CCCTTCCHHHHHHHHHHHTCSEEEEEEECTTCCBSSCCTTCSCBGGGSTTCSCHHHHHHHHHHHTTCEEE T ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC T ss_conf 5966599999999999849967997666237853447899998554678876648999999986598652 No 18 >>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 2cl3_A 2j8q_A (A:) Probab=34.06 E-value=33 Score=16.39 Aligned_cols=50 Identities=20% Similarity=0.405 Sum_probs=33.5 Q ss_pred HHHCCCEEEEEEEC-----------------CCCCCCCCHHHHHH-HHHHHHHHHHCCCEEEEEEEECC Q ss_conf 97319689999556-----------------89898814778999-99999999764988997999859 Q 537021.9.peg.8 35 LELSATSIILVHNH-----------------PSGNPNPSDADINM-TQNIITTLNPLNIIVHDHIIIGK 85 (97) Q Consensus 35 l~~~A~~vilaHNH-----------------PsG~~~PS~~Di~~-T~~l~~a~~~l~i~llDHiIv~~ 85 (97) ++....+|+++|-| |+|.+.|.+.+++- -|+|.+-+... =...+++.||+ T Consensus 57 mRrsVegVllvh~h~~PHVLLLq~~n~~fkLPGg~l~~gE~e~egLkRkL~~~l~~~-~~~~~~w~Vgd 124 (208) T 3bho_A 57 MRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQ-DGVLQDWVIDD 124 (208) T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEETTEEECSEEECCTTCCHHHHHHHHHHHHHCCC-C-----CEEEE T ss_pred CCEEEEEEEEEEECCCCEEEEEEECCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCC-CCCCCCCCHHH T ss_conf 821789999998079986999981792798988421699756899999999853875-57766428344 No 19 >>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, mechanism, dihydroxyacetone, glyceraldehyde-3-phosphate, aldol condensation, glycolysis; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* (A:) Probab=33.57 E-value=39 Score=15.95 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=40.3 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 9999999997319689999556898988147789999999999976498899799 Q 537021.9.peg.8 27 IREIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDHI 81 (97) Q Consensus 27 ~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDHi 81 (97) -.+.++.++..+-+++.+ -|+..|-++.++.|+++.+.+...++.+---+ T Consensus 113 ~~~~i~~~i~~GftSvMi-----D~S~~~~eeNi~~T~evve~a~~~~~~vE~Ei 162 (349) T 3elf_A 113 SAQRVSKGGNPLFQSHMW-----DGSAVPIDENLAIAQELLKAAAAAKIILEIEI 162 (349) T ss_dssp HHHHHHTTCCCSCSEEEE-----CCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEE T ss_pred HHHHHHHHHHCCCCCCCC-----CCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 699999865347751204-----58879999999999999974322796268875 No 20 >>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} (A:) Probab=32.00 E-value=41 Score=15.80 Aligned_cols=51 Identities=4% Similarity=0.031 Sum_probs=43.5 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE Q ss_conf 99999999973196899995568989881477899999999999764988997999 Q 537021.9.peg.8 27 IREIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDHII 82 (97) Q Consensus 27 ~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDHiI 82 (97) ..+.++.++..+-+++.+ -|+..|-++.++.|+++.+.+...|+.+---+- T Consensus 126 ~~~~i~~ai~~Gf~SvMi-----D~S~lp~eeNi~~T~evv~~ah~~gv~vE~ElG 176 (358) T 1dos_A 126 GEKHFAATGKPLFSSHMI-----DLSEESLQENIEICSKYLERMSKIGMTLEIELG 176 (358) T ss_dssp HHHHHHHHSSCSCSEEEE-----CCTTSCHHHHHHHHHHHHHHHHHTTCEEEEECC T ss_pred HHHHHHHHCCCCCCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEE T ss_conf 999999827787765667-----888787899999999999997464776897202 No 21 >>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'- phosphate, hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} (A:63-272) Probab=29.87 E-value=45 Score=15.58 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=35.5 Q ss_pred CHHHHHHHHHHHCCCEEEEEE-ECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEE Q ss_conf 299999999973196899995-56898988147789999999999976498899 Q 537021.9.peg.8 26 YIREIVQRCLELSATSIILVH-NHPSGNPNPSDADINMTQNIITTLNPLNIIVH 78 (97) Q Consensus 26 ~~r~i~~~al~~~A~~vilaH-NHPsG~~~PS~~Di~~T~~l~~a~~~l~i~ll 78 (97) ..-+-++.++..+...+++.| |.|.|...| .++|.+.++..++.++ T Consensus 91 ~~~~~~~~ai~~~t~~v~~~~~~n~tG~~~~-------l~~i~~~~~~~~~~v~ 137 (210) T 1qz9_A 91 DSPEELPQAIDQDTAVVMLTHVNYKTGYMHD-------MQALTALSHECGALAI 137 (210) T ss_dssp SSGGGHHHHCSTTEEEEEEESBCTTTCBBCC-------HHHHHHHHHHHTCEEE T ss_pred CCHHHHHHHCCCCCEEEEEEEECCCCCCEEC-------HHHHHHHHHHCCCEEE T ss_conf 8999999746888359999752488774616-------9999988620574289 No 22 >>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genomics, SGC stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B (A:1-261) Probab=26.64 E-value=51 Score=15.24 Aligned_cols=44 Identities=5% Similarity=0.120 Sum_probs=35.4 Q ss_pred HHHHHHHHHHCCCEEEEEE-ECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEE Q ss_conf 9999999973196899995-56898988147789999999999976498899 Q 537021.9.peg.8 28 REIVQRCLELSATSIILVH-NHPSGNPNPSDADINMTQNIITTLNPLNIIVH 78 (97) Q Consensus 28 r~i~~~al~~~A~~vilaH-NHPsG~~~PS~~Di~~T~~l~~a~~~l~i~ll 78 (97) -+-++.++..+...+.+.| ++|.|...| + ++|.+.|+.-|+.++ T Consensus 141 ~~~l~~~i~~~t~~v~i~~~~~~~G~~~d------i-~~i~~la~~~g~~vi 185 (261) T 3cog_A 141 IKLLEAAITPETKLVWIETPTNPTQKVID------I-EGCAHIVHKHGDIIL 185 (261) T ss_dssp HHHHHHHCCTTEEEEEEESSCTTTCCCCC------H-HHHHHHHTSSSCCEE T ss_pred HHHHHHHCCCCCCEEEEECCCCCCCEECC------H-HHHHHHHHHCCCCEE T ss_conf 99999746568868999788898886376------7-999999987189717 No 23 >>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics, NPPSFA; HET: PLP; 1.15A {Thermus thermophilus HB8} (A:33-276) Probab=25.82 E-value=53 Score=15.15 Aligned_cols=44 Identities=9% Similarity=-0.047 Sum_probs=36.6 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEE Q ss_conf 999999997319689999556898988147789999999999976498899 Q 537021.9.peg.8 28 REIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVH 78 (97) Q Consensus 28 r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~ll 78 (97) -+-++.++..+...+++.++|+.|...| -++|.+.|+.-|+.++ T Consensus 120 ~~~l~~~i~~~t~~v~~~~~~~~G~~~~-------i~~i~~la~~~g~~l~ 163 (244) T 2dkj_A 120 LEEVRRLALEHRPKVIVAGASAYPRFWD-------FKAFREIADEVGAYLV 163 (244) T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCC-------HHHHHHHHHHHTCEEE T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCC-------HHHHHHHHHHCCCEEE T ss_conf 9999999986399989825545655557-------8999987631185787 No 24 >>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzymes, ligase, drug design, ATP-binding, cytoplasm, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} (A:1-195) Probab=24.98 E-value=55 Score=15.06 Aligned_cols=65 Identities=11% Similarity=0.078 Sum_probs=46.3 Q ss_pred EEEEEECCCCEEEECHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCHHHHHH--HHHHHHHHHHCCCE Q ss_conf 89985404635893299999999973196-8999955689898814778999--99999999764988 Q 537021.9.peg.8 12 DEVQSRGTIDHVPVYIREIVQRCLELSAT-SIILVHNHPSGNPNPSDADINM--TQNIITTLNPLNII 76 (97) Q Consensus 12 ~e~i~~Gt~~~~~v~~r~i~~~al~~~A~-~vilaHNHPsG~~~PS~~Di~~--T~~l~~a~~~l~i~ 76 (97) ...++.|+-|....-=..++++|-..+.. .++....||+-...|......+ .++-...+...|+. T Consensus 33 ~~vvtiG~FDglH~GH~~Ll~~Ak~~g~~~vV~tf~~~p~~~~~~~~~~~~l~~~e~k~~l~~~~gvD 100 (195) T 3cov_A 33 RRVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAEGVE 100 (195) T ss_dssp CEEEEEEECSCCCHHHHHHHHHHHTSTTEEEEEEECCCGGGCCSSSHHHHSCCCHHHHHHHHHHTTCC T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC T ss_conf 90899938841538999999998752699799998406302587666766998889876676415874 No 25 >>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} (A:) Probab=24.08 E-value=57 Score=14.95 Aligned_cols=62 Identities=13% Similarity=0.115 Sum_probs=40.8 Q ss_pred EEEEEEECCCCEEEECHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE Q ss_conf 489985404635893299999999973196899995568989881477899999999999764988997 Q 537021.9.peg.8 11 ADEVQSRGTIDHVPVYIREIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHD 79 (97) Q Consensus 11 ~~e~i~~Gt~~~~~v~~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llD 79 (97) +.+.++...-..-.+++.++-+..-.....-++..-|+|.|...| + +++.+.|+.-|+.++- T Consensus 93 g~~~~~v~~~~~~~~~~~~le~~l~~~~~~v~~~~~~n~~G~~~~------l-~~i~~l~~~~g~~liv 154 (394) T 1o69_A 93 KAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAK------M-DEIVEICKENDIVLIE 154 (394) T ss_dssp TCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEECGGGCCCC------H-HHHHHHHHHTTCEEEE T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCH------H-HHHHHHHHHCCCEEEE T ss_conf 607887236665322203355554103568679998246788605------8-9999999975960796 No 26 >>2jx0_A ARF GTPase-activating protein GIT1; paxillin binding domain homologue, ANK repeat, cytoplasm, GTPase activation, metal-binding; NMR {Rattus norvegicus} (A:) Probab=24.01 E-value=57 Score=14.95 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=17.5 Q ss_pred CCC---CCCCHHHH-----HHHHHHHHHHHHC Q ss_conf 989---88147789-----9999999999764 Q 537021.9.peg.8 50 SGN---PNPSDADI-----NMTQNIITTLNPL 73 (97) Q Consensus 50 sG~---~~PS~~Di-----~~T~~l~~a~~~l 73 (97) .|+ ..||.+|+ ++|++|++.++.+ T Consensus 6 ~g~~~~~lPs~EdVir~TE~ITr~IqeLl~Aa 37 (135) T 2jx0_A 6 DGDPDPGLPSTEDVILKTEQVTKNIQELLRAA 37 (135) T ss_dssp CSSCBSSCSCHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 79989899972589999999999999999998 Done!