Query         537021.9.peg.816_1
Match_columns 97
No_of_seqs    103 out of 1329
Neff          5.7 
Searched_HMMs 33803
Date          Wed May 25 01:43:33 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_816.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2qlc_A DNA repair protein RAD 100.0   6E-38 1.8E-42  244.5  11.7   97    1-97     30-126 (126)
  2 >1oi0_A AF2198, hypothetical p  93.2     0.1   3E-06   31.2   3.8   36   28-63     52-87  (124)
  3 >2kcq_A MOV34/MPN/PAD-1 family  89.3    0.71 2.1E-05   26.2   4.8   36   27-62     64-99  (153)
  4 >2kks_A Uncharacterized protei  84.5     1.5 4.5E-05   24.2   4.3   47   16-62     48-97  (146)
  5 >1gvf_A Tagatose-bisphosphate   72.3     8.2 0.00024   19.9   6.5   49   28-81     87-135 (286)
  6 >1q79_A Poly(A) polymerase alp  59.9      11 0.00032   19.2   3.6   27   49-75     25-51  (198)
  7 >3c4u_A Fructose-bisphosphate   59.2      15 0.00044   18.4   6.5   49   28-81     87-135 (307)
  8 >1rvg_A Fructose-1,6-bisphosph  53.8      18 0.00055   17.9   6.5   50   27-81     84-133 (305)
  9 >2isw_A Putative fructose-1,6-  52.9      19 0.00056   17.8   6.3   50   27-81     87-136 (323)
 10 >1v8f_A Pantoate-beta-alanine   49.6      14 0.00043   18.5   2.8   65   12-76     17-83  (179)
 11 >3lot_A Uncharacterized protei  49.1     6.1 0.00018   20.7   0.9   51   22-72     26-81  (314)
 12 >1iho_A Pantoate--beta-alanine  46.9      23 0.00067   17.3   3.5   65   13-77     23-89  (185)
 13 >3chv_A Prokaryotic domain of   46.1      11 0.00034   19.1   1.9   51   22-72     28-82  (284)
 14 >1oxj_A RNA-binding protein sm  42.6      21 0.00061   17.6   2.7   37   40-76     27-65  (109)
 15 >3c6c_A 3-keto-5-aminohexanoat  39.0      10 0.00031   19.3   0.8   49   22-70     42-95  (316)
 16 >3e49_A Uncharacterized protei  38.0     9.2 0.00027   19.6   0.4   51   22-72     26-81  (311)
 17 >2wvv_A Alpha-L-fucosidase; al  34.8      37  0.0011   16.1   4.3   59   20-78     73-142 (351)
 18 >3bho_A Cleavage and polyadeny  34.1      33 0.00097   16.4   2.7   50   35-85     57-124 (208)
 19 >3elf_A Fructose-bisphosphate   33.6      39  0.0011   16.0   4.2   50   27-81    113-162 (349)
 20 >1dos_A Aldolase class II; lya  32.0      41  0.0012   15.8   5.5   51   27-82    126-176 (358)
 21 >1qz9_A Kynureninase; kynureni  29.9      45  0.0013   15.6   3.4   46   26-78     91-137 (210)
 22 >3cog_A Cystathionine gamma-ly  26.6      51  0.0015   15.2   3.3   44   28-78    141-185 (261)
 23 >2dkj_A Serine hydroxymethyltr  25.8      53  0.0016   15.2   5.3   44   28-78    120-163 (244)
 24 >3cov_A Pantothenate synthetas  25.0      55  0.0016   15.1   3.7   65   12-76     33-100 (195)
 25 >1o69_A Aminotransferase; stru  24.1      57  0.0017   15.0   4.1   62   11-79     93-154 (394)
 26 >2jx0_A ARF GTPase-activating   24.0      57  0.0017   14.9   3.1   24   50-73      6-37  (135)

No 1  
>>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: DNA; 2.30A {Chlorobium tepidum tls} (A:)
Probab=100.00  E-value=6e-38  Score=244.46  Aligned_cols=97  Identities=37%  Similarity=0.587  Sum_probs=95.9

Q ss_pred             CCCCCCCCEEEEEEEEECCCCEEEECHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             95156887734899854046358932999999999731968999955689898814778999999999997649889979
Q 537021.9.peg.8    1 LFLDKHNILIADEVQSRGTIDHVPVYIREIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDH   80 (97)
Q Consensus         1 l~Ld~~~~li~~e~i~~Gt~~~~~v~~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDH   80 (97)
                      +|||++|++++++.+++||++++.++||+||++||+.+|+++|++||||||+++||++|+++|++|+++|+.+||+|+||
T Consensus        30 l~Ld~~~~ii~~~~i~~Gt~~~~~v~~R~i~~~al~~~A~~vil~HNHPsG~~~PS~~D~~~T~~l~~a~~~l~I~llDH  109 (126)
T 2qlc_A           30 LFLSTKNQILRHETITIGTLTASLIHPREIFKAAIRESAHSIILVHNHPSGDVQPSNADKQVTSILKKAGDLLQIELLDH  109 (126)
T ss_dssp             EEECTTCBEEEEEEEEESSCCGGGCCHHHHHHHHHHTTCSEEEEEEECSSSCCSCCHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred             EEECCCCCEEEEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             99879998878999715777457883999999999816975999987477889978667999999999997689889769


Q ss_pred             EEECCCCEEEHHHCCCC
Q ss_conf             99859959974525899
Q 537021.9.peg.8   81 IIIGKDAFVSFKGLRII   97 (97)
Q Consensus        81 iIv~~~~~~S~re~gll   97 (97)
                      +|||+++||||||+|+|
T Consensus       110 iIi~~~~~~S~~e~gll  126 (126)
T 2qlc_A          110 VIVGNNDWFSFRDHALL  126 (126)
T ss_dssp             EEECSSCEEETTTTTCC
T ss_pred             EEEECCEEEEHHHCCCC
T ss_conf             99929909986635789


No 2  
>>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} (A:)
Probab=93.24  E-value=0.1  Score=31.19  Aligned_cols=36  Identities=28%  Similarity=0.382  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHH
Q ss_conf             999999997319689999556898988147789999
Q 537021.9.peg.8   28 REIVQRCLELSATSIILVHNHPSGNPNPSDADINMT   63 (97)
Q Consensus        28 r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T   63 (97)
                      ...+..+...+-.-+-..|-||+|.+.||..|++.-
T Consensus        52 ~~~~~~~~~~~~~~vG~~HSHP~~~~~PS~~D~~~~   87 (124)
T 1oi0_A           52 AVIHLDMLPIGMKVFGTVHSHPSPSCRPSEEDLSLF   87 (124)
T ss_dssp             ---------CCCEEEEEEEEESSSCCSCCHHHHHHH
T ss_pred             EEEEECHHHCCCEEEEEEEECCCCCCCCCHHHHHHH
T ss_conf             334506111688089999858999897798999740


No 3  
>>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855} (A:)
Probab=89.31  E-value=0.71  Score=26.18  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHH
Q ss_conf             999999999731968999955689898814778999
Q 537021.9.peg.8   27 IREIVQRCLELSATSIILVHNHPSGNPNPSDADINM   62 (97)
Q Consensus        27 ~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~   62 (97)
                      -.++.+.+-..+-.-+-..|-||.+.+.||..|+..
T Consensus        64 ~~~~~~~~~~~g~~~VG~~HSHP~~~~~pS~~D~~~   99 (153)
T 2kcq_A           64 YRAADAAAQEQGLDVVGVYHSHPDHPARPSATDLEE   99 (153)
T ss_dssp             HHHHHHHHHHHTCEEEEEEEECSSSSSSCCHHHHHT
T ss_pred             HHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHH
T ss_conf             999999877559728999972899999989999996


No 4  
>>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiative; NMR {Desulfitobacterium hafniense Y51} (A:)
Probab=84.50  E-value=1.5  Score=24.22  Aligned_cols=47  Identities=19%  Similarity=0.215  Sum_probs=36.9

Q ss_pred             EECCCCEEEECHHHHHH---HHHHHCCCEEEEEEECCCCCCCCCHHHHHH
Q ss_conf             54046358932999999---999731968999955689898814778999
Q 537021.9.peg.8   16 SRGTIDHVPVYIREIVQ---RCLELSATSIILVHNHPSGNPNPSDADINM   62 (97)
Q Consensus        16 ~~Gt~~~~~v~~r~i~~---~al~~~A~~vilaHNHPsG~~~PS~~Di~~   62 (97)
                      ..++.++..+++++..+   .+...+-.-+-..|-||.+.+.||..|+..
T Consensus        48 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vG~~HSHP~~~~~pS~~D~~~   97 (146)
T 2kks_A           48 LDQSPEHFSMDPREQLTAVKDMRKNGWVMLGNFHSHPATPARPSAEDKRL   97 (146)
T ss_dssp             CSCCSSSCCCCHHHHHHHHHHHHHHTCEEEEEEEEESSSCSSCCHHHHTT
T ss_pred             CCCCCCEEEECHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHH
T ss_conf             78898479988899999999997489879999974999999899899997


No 5  
>>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} (A:)
Probab=72.29  E-value=8.2  Score=19.92  Aligned_cols=49  Identities=10%  Similarity=0.269  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             999999997319689999556898988147789999999999976498899799
Q 537021.9.peg.8   28 REIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDHI   81 (97)
Q Consensus        28 r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDHi   81 (97)
                      -+..++|++.+-+++.+     -|+..|-++.+..|+++.+.+...|+.+---+
T Consensus        87 ~e~i~~ai~~GftSVMi-----DgS~lp~eeNi~~T~evv~~ah~~gv~VEaEl  135 (286)
T 1gvf_A           87 LDDIRRKVHAGVRSAMI-----DGSHFPFAENVKLVKSVVDFCHSQDCSVEAEL  135 (286)
T ss_dssp             HHHHHHHHHTTCCEEEE-----CCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHCCCCCEEEE-----ECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             99999985579975887-----48978999999999999998574231487864


No 6  
>>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase; HET: 3AT; 2.15A {Bos taurus} (A:1-50,A:215-362)
Probab=59.89  E-value=11  Score=19.24  Aligned_cols=27  Identities=30%  Similarity=0.559  Sum_probs=22.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf             898988147789999999999976498
Q 537021.9.peg.8   49 PSGNPNPSDADINMTQNIITTLNPLNI   75 (97)
Q Consensus        49 PsG~~~PS~~Di~~T~~l~~a~~~l~i   75 (97)
                      |-....|.+.|...|++|.++++..|=
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~P   51 (198)
T 1q79_A           25 PISLAAPKETDXLLTQKLVETLKPFGP   51 (198)
T ss_dssp             CSCCCCCCHHHHHHHHHHHHHHGGGTS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             843589986889988999999987183


No 7  
>>3c4u_A Fructose-bisphosphate aldolase; FBP aldolase, class II, zinc, glycolysis, lyase, metal- binding; 1.83A {Helicobacter pylori} PDB: 3c52_A* 3c56_A* (A:)
Probab=59.24  E-value=15  Score=18.39  Aligned_cols=49  Identities=10%  Similarity=0.293  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             999999997319689999556898988147789999999999976498899799
Q 537021.9.peg.8   28 REIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDHI   81 (97)
Q Consensus        28 r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDHi   81 (97)
                      .+.++.|++.+-+++.+     -|+..|=++.++.|+++.+.+...|+.+---+
T Consensus        87 ~e~i~~ai~~GftSVMi-----DgS~lp~eeNi~~T~evv~~ah~~gv~VEaEl  135 (307)
T 3c4u_A           87 FESCEKAVKAGFTSVMI-----DASHHAFEENLELTSKVVKMAHNAGVSVEAEL  135 (307)
T ss_dssp             HHHHHHHHHHTCSEEEE-----CCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHCCCCEEEE-----CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             99999998579864886-----18856789999999999999997598678864


No 8  
>>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} (A:)
Probab=53.78  E-value=18  Score=17.85  Aligned_cols=50  Identities=16%  Similarity=0.307  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             9999999997319689999556898988147789999999999976498899799
Q 537021.9.peg.8   27 IREIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDHI   81 (97)
Q Consensus        27 ~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDHi   81 (97)
                      -.+.++.+++.+-+++.+     -|+..|=++.++.|+++.+.+...|+.+---+
T Consensus        84 ~~e~i~~ai~~GftSvMi-----DgS~lp~eeNi~~T~evv~~a~~~gv~VE~El  133 (305)
T 1rvg_A           84 SYESVLRALRAGFTSVMI-----DKSHEDFETNVRETRRVVEAAHAVGVTVEAEL  133 (305)
T ss_dssp             SHHHHHHHHHTTCSEEEE-----CCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CHHHHHHHHHCCCCEEEE-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_conf             877776876468766886-----78622377789999999998788654011000


No 9  
>>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3gay_A* 3gak_A* 3gb6_A* (A:)
Probab=52.91  E-value=19  Score=17.77  Aligned_cols=50  Identities=16%  Similarity=0.393  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             9999999997319689999556898988147789999999999976498899799
Q 537021.9.peg.8   27 IREIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDHI   81 (97)
Q Consensus        27 ~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDHi   81 (97)
                      -.+.++.|++.+-+||.+     -|+..|=++.++.|+++.+.+...|+.+---+
T Consensus        87 ~~e~i~~ai~~GftSVMi-----DgS~lp~eeNi~~T~evv~~ah~~gv~VEaEl  136 (323)
T 2isw_A           87 TLESVKMAIDLGFSSVMI-----DASHHPFDENVRITKEVVAYAHARSVSVEAEL  136 (323)
T ss_dssp             SHHHHHHHHHTTCSEEEE-----CCTTSCHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CHHHHHHHHHCCCCEEEE-----ECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             799999997548856885-----07879769899999999986444571489865


No 10 
>>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} (A:1-179)
Probab=49.64  E-value=14  Score=18.49  Aligned_cols=65  Identities=12%  Similarity=-0.019  Sum_probs=46.1

Q ss_pred             EEEEEECCCCEEEECHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHH--HHHHHHHHHHHHCCCE
Q ss_conf             8998540463589329999999997319689999556898988147789--9999999999764988
Q 537021.9.peg.8   12 DEVQSRGTIDHVPVYIREIVQRCLELSATSIILVHNHPSGNPNPSDADI--NMTQNIITTLNPLNII   76 (97)
Q Consensus        12 ~e~i~~Gt~~~~~v~~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di--~~T~~l~~a~~~l~i~   76 (97)
                      ...++.|+-|....-=+.++++|-..+...++....||+....+...-.  ...++-.+.++.+|+.
T Consensus        17 ~~Vv~iG~FDgiH~GH~~ll~~Ak~~~~~~vV~f~~~p~~~~~~~~~~~~l~~~e~k~~ll~~~gVD   83 (179)
T 1v8f_A           17 EGVGFVPTMGYLHRGHLALVERARRENPFVVVSVFVNPLQFGPGEDYHRYPRDLERDRALLQEAGVD   83 (179)
T ss_dssp             SCEEEEEECSSCCHHHHHHHHHHHHHCSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHTTCS
T ss_pred             CCEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHCCCC
T ss_conf             9889986876075899999999987489789999846877897310221262177778899867996


No 11 
>>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus} (A:)
Probab=49.10  E-value=6.1  Score=20.67  Aligned_cols=51  Identities=18%  Similarity=0.263  Sum_probs=37.5

Q ss_pred             EEEECHHHHHHHHHHHCCCEEEEEEECCCC--CCCCCHH--HH-HHHHHHHHHHHH
Q ss_conf             589329999999997319689999556898--9881477--89-999999999976
Q 537021.9.peg.8   22 HVPVYIREIVQRCLELSATSIILVHNHPSG--NPNPSDA--DI-NMTQNIITTLNP   72 (97)
Q Consensus        22 ~~~v~~r~i~~~al~~~A~~vilaHNHPsG--~~~PS~~--Di-~~T~~l~~a~~~   72 (97)
                      ..++-|-||.+.|..+-..+--++|-|+-.  +-+||..  +. ++...+++.|..
T Consensus        26 ~lP~TpeEia~~A~~c~~AGAsivHlH~Rdp~dG~~s~d~~~y~eii~~Ir~~~d~   81 (314)
T 3lot_A           26 YLPVTPDQIVEEAVKAAEAGAGXVHIHARDPKDGRPTTDVEVFRYICREIKKQSDV   81 (314)
T ss_dssp             TSCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHHHCCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             99899999999999999825638997725777898178989999999999861897


No 12 
>>1iho_A Pantoate--beta-alanine ligase; rossman fold, dimer, APO, high, KSMKS, flexible domains, multidomain; 1.70A {Escherichia coli} (A:1-185)
Probab=46.91  E-value=23  Score=17.31  Aligned_cols=65  Identities=14%  Similarity=0.088  Sum_probs=49.9

Q ss_pred             EEEEECCCCEEEECHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHH--HHHHHHHHHCCCEE
Q ss_conf             998540463589329999999997319689999556898988147789999--99999997649889
Q 537021.9.peg.8   13 EVQSRGTIDHVPVYIREIVQRCLELSATSIILVHNHPSGNPNPSDADINMT--QNIITTLNPLNIIV   77 (97)
Q Consensus        13 e~i~~Gt~~~~~v~~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T--~~l~~a~~~l~i~l   77 (97)
                      ..++.|+-|....-=+.+++.|-..+...++....+|+-...+.....-+|  ++-....+..++..
T Consensus        23 ~vv~~G~FDglH~GH~~ll~~Ak~~g~~~vv~~~~~~~~~~~~~~~~~~lt~~er~~~l~~~~gVd~   89 (185)
T 1iho_A           23 RVALVPTMGNLHDGHMKLVDEAKARADVVVVSIFVNPMQFDRPEDLARYPRTLQEDCEKLNKRKVDL   89 (185)
T ss_dssp             CEEEEEECSCCCHHHHHHHHHHHHHCSEEEEEECCCGGGCSSHHHHHHSCCCHHHHHHHHHHTTCSE
T ss_pred             CEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCE
T ss_conf             0999758740648999999999986990999995377767984568877999899999998769989


No 13 
>>3chv_A Prokaryotic domain of unknown function (DUF849) with A TIM barrel fold; YP_164873.1; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A (A:)
Probab=46.13  E-value=11  Score=19.08  Aligned_cols=51  Identities=22%  Similarity=0.350  Sum_probs=40.2

Q ss_pred             EEEECHHHHHHHHHHHCCCEEEEEEEC---CCCCCCCCHHHH-HHHHHHHHHHHH
Q ss_conf             589329999999997319689999556---898988147789-999999999976
Q 537021.9.peg.8   22 HVPVYIREIVQRCLELSATSIILVHNH---PSGNPNPSDADI-NMTQNIITTLNP   72 (97)
Q Consensus        22 ~~~v~~r~i~~~al~~~A~~vilaHNH---PsG~~~PS~~Di-~~T~~l~~a~~~   72 (97)
                      ..++-|.||.+.|..+-..+--++|-|   |.|.+....++. ++...+++.|.-
T Consensus        28 ~lP~TpeEia~~a~~c~~AGAaivHlH~R~~dG~~s~d~~~y~e~i~~Ir~~~pd   82 (284)
T 3chv_A           28 AVPITVSEQVESTQEAFEAGAAIAHCHVRNDDGTPSSDPDRFARLTEGLHTHCPG   82 (284)
T ss_dssp             TCCCSHHHHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             9989989999999999981886899873289949777889999999999986682


No 14 
>>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} (A:65-173)
Probab=42.56  E-value=21  Score=17.57  Aligned_cols=37  Identities=27%  Similarity=0.392  Sum_probs=29.7

Q ss_pred             CEEEEEEECCCCCCCCCHHHH--HHHHHHHHHHHHCCCE
Q ss_conf             689999556898988147789--9999999999764988
Q 537021.9.peg.8   40 TSIILVHNHPSGNPNPSDADI--NMTQNIITTLNPLNII   76 (97)
Q Consensus        40 ~~vilaHNHPsG~~~PS~~Di--~~T~~l~~a~~~l~i~   76 (97)
                      +.+++.--.|+|...|-++|+  ++|+-+-+.|..+-+.
T Consensus        27 ~~Iv~TPmKp~~~~~~~eeDip~qFtkVmgkvct~L~~~   65 (109)
T 1oxj_A           27 TNIVLTPMKPLESPGPPEENIGLRFLKVIDIVTNTLQQD   65 (109)
T ss_dssp             HTTTTSCCCCTTCCSCGGGCHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             899714650357899961112168999999999999862


No 15 
>>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; YP_293392.1, prokaryotic protein of unknown function (DUF849), structural genomics; HET: MSE; 1.72A {Ralstonia eutropha JMP134} (A:)
Probab=39.00  E-value=10  Score=19.32  Aligned_cols=49  Identities=14%  Similarity=0.241  Sum_probs=34.8

Q ss_pred             EEEECHHHHHHHHHHHCCCEEEEEEECCCC--CCCCCH--HHH-HHHHHHHHHH
Q ss_conf             589329999999997319689999556898--988147--789-9999999999
Q 537021.9.peg.8   22 HVPVYIREIVQRCLELSATSIILVHNHPSG--NPNPSD--ADI-NMTQNIITTL   70 (97)
Q Consensus        22 ~~~v~~r~i~~~al~~~A~~vilaHNHPsG--~~~PS~--~Di-~~T~~l~~a~   70 (97)
                      .+++-|.||.+.|..+-..+--++|-|+-.  +-.||.  ++. ++...+++.|
T Consensus        42 ~lP~TpeEIa~~A~~c~~AGAaivHlH~Rd~~dG~~s~d~~~y~eii~~IR~~~   95 (316)
T 3c6c_A           42 SXPITPAQIADACVEAAKAGASVAHIHVRDPKTGGGSRDPVLFKEVVDRVRSSG   95 (316)
T ss_dssp             TCCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             998998999999999998187389987558888996789999999999999873


No 16 
>>3e49_A Uncharacterized protein DUF849 with A TIM barrel fold; YP_556190.1; HET: MSE; 1.75A {Burkholderia xenovorans LB400} (A:)
Probab=38.00  E-value=9.2  Score=19.64  Aligned_cols=51  Identities=16%  Similarity=0.315  Sum_probs=38.1

Q ss_pred             EEEECHHHHHHHHHHHCCCEEEEEEECCCC--CCCCCHH--HH-HHHHHHHHHHHH
Q ss_conf             589329999999997319689999556898--9881477--89-999999999976
Q 537021.9.peg.8   22 HVPVYIREIVQRCLELSATSIILVHNHPSG--NPNPSDA--DI-NMTQNIITTLNP   72 (97)
Q Consensus        22 ~~~v~~r~i~~~al~~~A~~vilaHNHPsG--~~~PS~~--Di-~~T~~l~~a~~~   72 (97)
                      ..++-|.||.+.|..+-..+--++|-|+-.  +-+||..  +. ++..++++.|..
T Consensus        26 ~lP~TpeEia~~a~~c~~AGAsivHlH~Rd~~dG~~s~d~~~y~eii~~IR~~~d~   81 (311)
T 3e49_A           26 YLPVTPDEVAQASIGAAEAGAAVIHLHARDPRDGRPTQDPAAFAEFLPRIKSNTDA   81 (311)
T ss_dssp             TSCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTHHHHHHHHCCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             99899899999999999818738997735777799078999999999999860896


No 17 
>>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A* (A:1-351)
Probab=34.80  E-value=37  Score=16.07  Aligned_cols=59  Identities=12%  Similarity=0.187  Sum_probs=46.5

Q ss_pred             CCEEEECHHHHHHHHHHHCCCEEEEEEECCCC-------CCC----CCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             63589329999999997319689999556898-------988----147789999999999976498899
Q 537021.9.peg.8   20 IDHVPVYIREIVQRCLELSATSIILVHNHPSG-------NPN----PSDADINMTQNIITTLNPLNIIVH   78 (97)
Q Consensus        20 ~~~~~v~~r~i~~~al~~~A~~vilaHNHPsG-------~~~----PS~~Di~~T~~l~~a~~~l~i~ll   78 (97)
                      -+...++|.+.++.+-..+|..+|+.=-|=.|       ...    .+.....+.+.+.+||+.-||++-
T Consensus        73 f~p~~fD~~~wv~~~k~aGakyvvltakHHdGf~lw~S~~~~~~~~~~~~~rDiv~el~~A~rk~Glk~g  142 (351)
T 2wvv_A           73 WNPTKFDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKRDILGELVKAYNDEGIDVH  142 (351)
T ss_dssp             CCCTTCCHHHHHHHHHHHTCSEEEEEEECTTCCBSSCCTTCSCBGGGSTTCSCHHHHHHHHHHHTTCEEE
T ss_pred             CCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf             5966599999999999849967997666237853447899998554678876648999999986598652


No 18 
>>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 2cl3_A 2j8q_A (A:)
Probab=34.06  E-value=33  Score=16.39  Aligned_cols=50  Identities=20%  Similarity=0.405  Sum_probs=33.5

Q ss_pred             HHHCCCEEEEEEEC-----------------CCCCCCCCHHHHHH-HHHHHHHHHHCCCEEEEEEEECC
Q ss_conf             97319689999556-----------------89898814778999-99999999764988997999859
Q 537021.9.peg.8   35 LELSATSIILVHNH-----------------PSGNPNPSDADINM-TQNIITTLNPLNIIVHDHIIIGK   85 (97)
Q Consensus        35 l~~~A~~vilaHNH-----------------PsG~~~PS~~Di~~-T~~l~~a~~~l~i~llDHiIv~~   85 (97)
                      ++....+|+++|-|                 |+|.+.|.+.+++- -|+|.+-+... =...+++.||+
T Consensus        57 mRrsVegVllvh~h~~PHVLLLq~~n~~fkLPGg~l~~gE~e~egLkRkL~~~l~~~-~~~~~~w~Vgd  124 (208)
T 3bho_A           57 MRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQ-DGVLQDWVIDD  124 (208)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEEEEETTEEECSEEECCTTCCHHHHHHHHHHHHHCCC-C-----CEEEE
T ss_pred             CCEEEEEEEEEEECCCCEEEEEEECCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCC-CCCCCCCCHHH
T ss_conf             821789999998079986999981792798988421699756899999999853875-57766428344


No 19 
>>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, mechanism, dihydroxyacetone, glyceraldehyde-3-phosphate, aldol condensation, glycolysis; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* (A:)
Probab=33.57  E-value=39  Score=15.95  Aligned_cols=50  Identities=18%  Similarity=0.244  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             9999999997319689999556898988147789999999999976498899799
Q 537021.9.peg.8   27 IREIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDHI   81 (97)
Q Consensus        27 ~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDHi   81 (97)
                      -.+.++.++..+-+++.+     -|+..|-++.++.|+++.+.+...++.+---+
T Consensus       113 ~~~~i~~~i~~GftSvMi-----D~S~~~~eeNi~~T~evve~a~~~~~~vE~Ei  162 (349)
T 3elf_A          113 SAQRVSKGGNPLFQSHMW-----DGSAVPIDENLAIAQELLKAAAAAKIILEIEI  162 (349)
T ss_dssp             HHHHHHTTCCCSCSEEEE-----CCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHCCCCCCCC-----CCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             699999865347751204-----58879999999999999974322796268875


No 20 
>>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} (A:)
Probab=32.00  E-value=41  Score=15.80  Aligned_cols=51  Identities=4%  Similarity=0.031  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             99999999973196899995568989881477899999999999764988997999
Q 537021.9.peg.8   27 IREIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDHII   82 (97)
Q Consensus        27 ~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDHiI   82 (97)
                      ..+.++.++..+-+++.+     -|+..|-++.++.|+++.+.+...|+.+---+-
T Consensus       126 ~~~~i~~ai~~Gf~SvMi-----D~S~lp~eeNi~~T~evv~~ah~~gv~vE~ElG  176 (358)
T 1dos_A          126 GEKHFAATGKPLFSSHMI-----DLSEESLQENIEICSKYLERMSKIGMTLEIELG  176 (358)
T ss_dssp             HHHHHHHHSSCSCSEEEE-----CCTTSCHHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             HHHHHHHHCCCCCCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_conf             999999827787765667-----888787899999999999997464776897202


No 21 
>>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'- phosphate, hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} (A:63-272)
Probab=29.87  E-value=45  Score=15.58  Aligned_cols=46  Identities=13%  Similarity=0.188  Sum_probs=35.5

Q ss_pred             CHHHHHHHHHHHCCCEEEEEE-ECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             299999999973196899995-56898988147789999999999976498899
Q 537021.9.peg.8   26 YIREIVQRCLELSATSIILVH-NHPSGNPNPSDADINMTQNIITTLNPLNIIVH   78 (97)
Q Consensus        26 ~~r~i~~~al~~~A~~vilaH-NHPsG~~~PS~~Di~~T~~l~~a~~~l~i~ll   78 (97)
                      ..-+-++.++..+...+++.| |.|.|...|       .++|.+.++..++.++
T Consensus        91 ~~~~~~~~ai~~~t~~v~~~~~~n~tG~~~~-------l~~i~~~~~~~~~~v~  137 (210)
T 1qz9_A           91 DSPEELPQAIDQDTAVVMLTHVNYKTGYMHD-------MQALTALSHECGALAI  137 (210)
T ss_dssp             SSGGGHHHHCSTTEEEEEEESBCTTTCBBCC-------HHHHHHHHHHHTCEEE
T ss_pred             CCHHHHHHHCCCCCEEEEEEEECCCCCCEEC-------HHHHHHHHHHCCCEEE
T ss_conf             8999999746888359999752488774616-------9999988620574289


No 22 
>>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genomics, SGC stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B (A:1-261)
Probab=26.64  E-value=51  Score=15.24  Aligned_cols=44  Identities=5%  Similarity=0.120  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHCCCEEEEEE-ECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             9999999973196899995-56898988147789999999999976498899
Q 537021.9.peg.8   28 REIVQRCLELSATSIILVH-NHPSGNPNPSDADINMTQNIITTLNPLNIIVH   78 (97)
Q Consensus        28 r~i~~~al~~~A~~vilaH-NHPsG~~~PS~~Di~~T~~l~~a~~~l~i~ll   78 (97)
                      -+-++.++..+...+.+.| ++|.|...|      + ++|.+.|+.-|+.++
T Consensus       141 ~~~l~~~i~~~t~~v~i~~~~~~~G~~~d------i-~~i~~la~~~g~~vi  185 (261)
T 3cog_A          141 IKLLEAAITPETKLVWIETPTNPTQKVID------I-EGCAHIVHKHGDIIL  185 (261)
T ss_dssp             HHHHHHHCCTTEEEEEEESSCTTTCCCCC------H-HHHHHHHTSSSCCEE
T ss_pred             HHHHHHHCCCCCCEEEEECCCCCCCEECC------H-HHHHHHHHHCCCCEE
T ss_conf             99999746568868999788898886376------7-999999987189717


No 23 
>>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics, NPPSFA; HET: PLP; 1.15A {Thermus thermophilus HB8} (A:33-276)
Probab=25.82  E-value=53  Score=15.15  Aligned_cols=44  Identities=9%  Similarity=-0.047  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             999999997319689999556898988147789999999999976498899
Q 537021.9.peg.8   28 REIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVH   78 (97)
Q Consensus        28 r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~ll   78 (97)
                      -+-++.++..+...+++.++|+.|...|       -++|.+.|+.-|+.++
T Consensus       120 ~~~l~~~i~~~t~~v~~~~~~~~G~~~~-------i~~i~~la~~~g~~l~  163 (244)
T 2dkj_A          120 LEEVRRLALEHRPKVIVAGASAYPRFWD-------FKAFREIADEVGAYLV  163 (244)
T ss_dssp             HHHHHHHHHHHCCSEEEECCSSCCSCCC-------HHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCC-------HHHHHHHHHHCCCEEE
T ss_conf             9999999986399989825545655557-------8999987631185787


No 24 
>>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzymes, ligase, drug design, ATP-binding, cytoplasm, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} (A:1-195)
Probab=24.98  E-value=55  Score=15.06  Aligned_cols=65  Identities=11%  Similarity=0.078  Sum_probs=46.3

Q ss_pred             EEEEEECCCCEEEECHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCHHHHHH--HHHHHHHHHHCCCE
Q ss_conf             89985404635893299999999973196-8999955689898814778999--99999999764988
Q 537021.9.peg.8   12 DEVQSRGTIDHVPVYIREIVQRCLELSAT-SIILVHNHPSGNPNPSDADINM--TQNIITTLNPLNII   76 (97)
Q Consensus        12 ~e~i~~Gt~~~~~v~~r~i~~~al~~~A~-~vilaHNHPsG~~~PS~~Di~~--T~~l~~a~~~l~i~   76 (97)
                      ...++.|+-|....-=..++++|-..+.. .++....||+-...|......+  .++-...+...|+.
T Consensus        33 ~~vvtiG~FDglH~GH~~Ll~~Ak~~g~~~vV~tf~~~p~~~~~~~~~~~~l~~~e~k~~l~~~~gvD  100 (195)
T 3cov_A           33 RRVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAEGVE  100 (195)
T ss_dssp             CEEEEEEECSCCCHHHHHHHHHHHTSTTEEEEEEECCCGGGCCSSSHHHHSCCCHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf             90899938841538999999998752699799998406302587666766998889876676415874


No 25 
>>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} (A:)
Probab=24.08  E-value=57  Score=14.95  Aligned_cols=62  Identities=13%  Similarity=0.115  Sum_probs=40.8

Q ss_pred             EEEEEEECCCCEEEECHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             489985404635893299999999973196899995568989881477899999999999764988997
Q 537021.9.peg.8   11 ADEVQSRGTIDHVPVYIREIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHD   79 (97)
Q Consensus        11 ~~e~i~~Gt~~~~~v~~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llD   79 (97)
                      +.+.++...-..-.+++.++-+..-.....-++..-|+|.|...|      + +++.+.|+.-|+.++-
T Consensus        93 g~~~~~v~~~~~~~~~~~~le~~l~~~~~~v~~~~~~n~~G~~~~------l-~~i~~l~~~~g~~liv  154 (394)
T 1o69_A           93 KAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAK------M-DEIVEICKENDIVLIE  154 (394)
T ss_dssp             TCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEECGGGCCCC------H-HHHHHHHHHTTCEEEE
T ss_pred             CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCH------H-HHHHHHHHHCCCEEEE
T ss_conf             607887236665322203355554103568679998246788605------8-9999999975960796


No 26 
>>2jx0_A ARF GTPase-activating protein GIT1; paxillin binding domain homologue, ANK repeat, cytoplasm, GTPase activation, metal-binding; NMR {Rattus norvegicus} (A:)
Probab=24.01  E-value=57  Score=14.95  Aligned_cols=24  Identities=33%  Similarity=0.508  Sum_probs=17.5

Q ss_pred             CCC---CCCCHHHH-----HHHHHHHHHHHHC
Q ss_conf             989---88147789-----9999999999764
Q 537021.9.peg.8   50 SGN---PNPSDADI-----NMTQNIITTLNPL   73 (97)
Q Consensus        50 sG~---~~PS~~Di-----~~T~~l~~a~~~l   73 (97)
                      .|+   ..||.+|+     ++|++|++.++.+
T Consensus         6 ~g~~~~~lPs~EdVir~TE~ITr~IqeLl~Aa   37 (135)
T 2jx0_A            6 DGDPDPGLPSTEDVILKTEQVTKNIQELLRAA   37 (135)
T ss_dssp             CSSCBSSCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             79989899972589999999999999999998


Done!