Query 537021.9.peg.816_1
Match_columns 97
No_of_seqs 103 out of 1329
Neff 5.7
Searched_HMMs 23785
Date Wed May 25 04:35:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_816.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qlc_A DNA repair protein RADC 100.0 3.2E-39 1.3E-43 251.1 11.7 97 1-97 30-126 (126)
2 1oi0_A AF2198, hypothetical pr 95.5 0.013 5.5E-07 35.5 4.3 51 35-95 59-113 (124)
3 2kks_A Uncharacterized protein 92.5 0.12 5E-06 29.9 4.1 56 19-84 51-109 (146)
4 2kcq_A MOV34/MPN/PAD-1 family; 92.5 0.18 7.5E-06 28.8 5.0 55 20-84 54-111 (153)
5 1je0_A MTAP;, 5'-methylthioade 63.0 3.8 0.00016 21.0 2.5 42 49-90 121-162 (236)
6 2isw_A Putative fructose-1,6-b 60.7 9.9 0.00042 18.5 6.3 49 27-80 87-135 (323)
7 1z34_A Purine nucleoside phosp 47.4 7.8 0.00033 19.2 2.0 43 48-90 119-161 (235)
8 1q1g_A Uridine phosphorylase p 46.6 4.5 0.00019 20.6 0.7 40 53-92 127-166 (276)
9 1gvf_A Tagatose-bisphosphate a 45.4 18 0.00074 17.1 6.5 49 28-81 87-135 (286)
10 1ywx_A 30S ribosomal protein S 39.3 19 0.00079 16.9 2.9 38 40-81 17-55 (102)
11 2b94_A Purine nucleoside phosp 38.1 7.4 0.00031 19.3 0.7 40 53-92 148-187 (267)
12 1odk_A Purine nucleoside phosp 35.8 12 0.00052 18.0 1.5 40 51-90 122-161 (235)
13 3elf_A Fructose-bisphosphate a 34.1 27 0.0011 16.0 4.4 45 31-80 117-161 (349)
14 1rvg_A Fructose-1,6-bisphospha 33.7 27 0.0011 16.0 6.5 50 27-81 84-133 (305)
15 3n9r_A Fructose-bisphosphate a 32.2 29 0.0012 15.8 6.5 50 27-81 86-135 (307)
16 2znr_A AMSH-like protease; met 32.0 29 0.0012 15.8 7.8 54 17-70 59-113 (178)
17 1vr6_A Phospho-2-dehydro-3-deo 30.3 31 0.0013 15.6 5.7 50 28-77 293-349 (350)
18 1xn9_A 30S ribosomal protein S 30.1 31 0.0013 15.6 2.9 40 40-83 17-57 (101)
19 2xrf_A Uridine phosphorylase 2 29.0 19 0.0008 16.9 1.5 38 53-90 162-200 (303)
20 3ddo_A Urdpase, upase, uridine 28.9 22 0.00091 16.6 1.8 39 52-90 126-164 (253)
21 3kp1_A D-ornithine aminomutase 26.2 37 0.0015 15.2 3.8 52 23-83 642-695 (763)
22 2ac7_A Purine nucleoside phosp 25.8 34 0.0014 15.4 2.4 40 51-90 122-161 (235)
23 3bho_A Cleavage and polyadenyl 23.2 42 0.0018 14.8 2.7 50 35-85 57-124 (208)
24 3iv3_A Tagatose 1,6-diphosphat 22.9 42 0.0018 14.8 6.4 55 31-85 116-171 (332)
25 2wje_A CPS4B, tyrosine-protein 21.3 46 0.0019 14.6 4.2 37 39-78 2-41 (247)
26 2rpr_A Flywch-type zinc finger 20.2 37 0.0015 15.2 1.6 15 44-63 67-81 (87)
No 1
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=100.00 E-value=3.2e-39 Score=251.08 Aligned_cols=97 Identities=37% Similarity=0.587 Sum_probs=95.9
Q ss_pred CCCCCCCCEEEEEEEEECCCCEEEECHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 95156887734899854046358932999999999731968999955689898814778999999999997649889979
Q 537021.9.peg.8 1 LFLDKHNILIADEVQSRGTIDHVPVYIREIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDH 80 (97)
Q Consensus 1 l~Ld~~~~li~~e~i~~Gt~~~~~v~~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDH 80 (97)
+|||++|++|+++.+++||++++.++||+||++||..+|+++|++||||||+++||++|+++|++|+++|+.+||+|+||
T Consensus 30 l~Ld~~~~~i~~~~i~~Gt~~~~~v~pR~i~~~al~~~A~~vIlaHNHPSG~~~PS~~D~~~T~~l~~a~~~l~i~llDH 109 (126)
T 2qlc_A 30 LFLSTKNQILRHETITIGTLTASLIHPREIFKAAIRESAHSIILVHNHPSGDVQPSNADKQVTSILKKAGDLLQIELLDH 109 (126)
T ss_dssp EEECTTCBEEEEEEEEESSCCGGGCCHHHHHHHHHHTTCSEEEEEEECSSSCCSCCHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred EEECCCCCEEEEEEECCCCCCEEEECHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99869998997999775816688742999999999816875999986797989968899999999999998779779779
Q ss_pred EEECCCCEEEHHHCCCC
Q ss_conf 99859959974525899
Q 537021.9.peg.8 81 IIIGKDAFVSFKGLRII 97 (97)
Q Consensus 81 iIv~~~~~~S~re~gll 97 (97)
+|||+++||||||+|+|
T Consensus 110 iIv~~~~~~S~re~gll 126 (126)
T 2qlc_A 110 VIVGNNDWFSFRDHALL 126 (126)
T ss_dssp EEECSSCEEETTTTTCC
T ss_pred EEEECCCEEEHHHCCCC
T ss_conf 99939919982314789
No 2
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=95.52 E-value=0.013 Score=35.49 Aligned_cols=51 Identities=24% Similarity=0.430 Sum_probs=37.2
Q ss_pred HHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEC----CCCEEEHHHCC
Q ss_conf 97319689999556898988147789999999999976498899799985----99599745258
Q 537021.9.peg.8 35 LELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDHIIIG----KDAFVSFKGLR 95 (97)
Q Consensus 35 l~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDHiIv~----~~~~~S~re~g 95 (97)
...+-.-+-+.|-||.|.+.||..|+..... .+. =++||+ ...|..|...|
T Consensus 59 ~~~~~~ivgi~HSHP~~~a~PS~~D~~~~~~-------~~~---~~iIv~~p~~~~~~~~~~~~g 113 (124)
T 1oi0_A 59 LPIGMKVFGTVHSHPSPSCRPSEEDLSLFTR-------FGK---YHIIVCYPYDENSWKCYNRKG 113 (124)
T ss_dssp --CCCEEEEEEEEESSSCCSCCHHHHHHHHH-------SCS---EEEEEETTCCTTCEEEEETTS
T ss_pred CCCCCEEEEEEEECCCCCCCCCHHHHHHHHC-------CCC---EEEEEECCCCCCCEEEEECCC
T ss_conf 4478759999983899989879899875240-------595---799997889988799990887
No 3
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiative; NMR {Desulfitobacterium hafniense Y51}
Probab=92.50 E-value=0.12 Score=29.85 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=38.9
Q ss_pred CCCEEEECHHHHHH---HHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 46358932999999---9997319689999556898988147789999999999976498899799985
Q 537021.9.peg.8 19 TIDHVPVYIREIVQ---RCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDHIIIG 84 (97)
Q Consensus 19 t~~~~~v~~r~i~~---~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDHiIv~ 84 (97)
+.+.-.++|++.++ .+-..+-.-+-+.|-||.+.+.||..|++.- ..-+.. .+||+
T Consensus 51 ~~~~f~~dp~~~~~~~~~~~~~~~~ivG~~HSHP~~~a~PS~~D~~~~-------~~~~~~---~lIvs 109 (146)
T 2kks_A 51 SPEHFSMDPREQLTAVKDMRKNGWVMLGNFHSHPATPARPSAEDKRLA-------FDPSLS---YLIIS 109 (146)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHTCEEEEEEEEESSSCSSCCHHHHTTC-------CSSSCE---EEEEE
T ss_pred CCCEEEECHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHH-------HCCCCE---EEEEE
T ss_conf 985697088999999999985698799999579999999998999972-------758983---99999
No 4
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=92.46 E-value=0.18 Score=28.82 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=35.9
Q ss_pred CCEEEECHHHHHH---HHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 6358932999999---9997319689999556898988147789999999999976498899799985
Q 537021.9.peg.8 20 IDHVPVYIREIVQ---RCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDHIIIG 84 (97)
Q Consensus 20 ~~~~~v~~r~i~~---~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDHiIv~ 84 (97)
.+.-.++|++.++ .+-..+-.-+-+.|-||++.+.||..|++.- ..-++ -++||+
T Consensus 54 ~~~f~idp~~~~~a~~~~~~~~~~ivG~yHSHP~~~a~PS~~D~~~~-------~~~~~---~ylIvs 111 (153)
T 2kcq_A 54 TRRYELTADDYRAADAAAQEQGLDVVGVYHSHPDHPARPSATDLEEA-------TFPGF---TYVIVS 111 (153)
T ss_dssp SCCSSCCCCSHHHHHHHHHHHTCEEEEEEEECSSSSSSCCHHHHHTC-------CCTTS---EEEEEE
T ss_pred CCEEEECHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHH-------HCCCC---CEEEEE
T ss_conf 61599899999999999874697499999789999898898999962-------73898---299998
No 5
>1je0_A MTAP;, 5'-methylthioadenosine phosphorylase; alpha-beta protein, transferase; 1.60A {Sulfolobus solfataricus} SCOP: c.56.2.1 PDB: 1jdt_A* 1jdu_A 1jdv_A* 1jdz_A* 1jds_A 1je1_A* 1jp7_A 1jpv_A
Probab=63.04 E-value=3.8 Score=21.00 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=36.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEE
Q ss_conf 898988147789999999999976498899799985995997
Q 537021.9.peg.8 49 PSGNPNPSDADINMTQNIITTLNPLNIIVHDHIIIGKDAFVS 90 (97)
Q Consensus 49 PsG~~~PS~~Di~~T~~l~~a~~~l~i~llDHiIv~~~~~~S 90 (97)
|.+.+.|..+|.++++++.++++..++++.=-.|++.+.||+
T Consensus 121 ~~~~~~~~~~d~~l~~~l~~~~~~~~~~~~~G~i~s~D~F~~ 162 (236)
T 1je0_A 121 RDNACVASTPDFELTNKLVTSFSKRNLKYYVGNVFSSDAFYA 162 (236)
T ss_dssp SSCCBCCCCCCHHHHHHHHHHHHHTTCCEEEEEEEECSCTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 677765667899999999999997399943866741587776
No 6
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=60.73 E-value=9.9 Score=18.55 Aligned_cols=49 Identities=16% Similarity=0.382 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 999999999731968999955689898814778999999999997649889979
Q 537021.9.peg.8 27 IREIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDH 80 (97)
Q Consensus 27 ~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDH 80 (97)
--+.++.++..+-+||.+ .|+..|-++.++.|+++.+.+...|+.+---
T Consensus 87 ~~e~i~~ai~~GftSVMi-----DgS~lp~eeNI~~Tk~vv~~Ah~~gv~VEaE 135 (323)
T 2isw_A 87 TLESVKMAIDLGFSSVMI-----DASHHPFDENVRITKEVVAYAHARSVSVEAE 135 (323)
T ss_dssp SHHHHHHHHHTTCSEEEE-----CCTTSCHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CHHHHHHHHHHCCCEEEE-----CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 999999999718986998-----3882339999999999999986538718996
No 7
>1z34_A Purine nucleoside phosphorylase; alpha-beta-alpha sandwich, transferase; HET: 2FD; 2.40A {Trichomonas vaginalis} PDB: 1z33_A* 1z35_A* 1z36_A* 1z37_A* 1z38_A* 1z39_A* 2i4t_A* 2isc_A*
Probab=47.45 E-value=7.8 Score=19.16 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=36.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEE
Q ss_conf 6898988147789999999999976498899799985995997
Q 537021.9.peg.8 48 HPSGNPNPSDADINMTQNIITTLNPLNIIVHDHIIIGKDAFVS 90 (97)
Q Consensus 48 HPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDHiIv~~~~~~S 90 (97)
+.-+...|..+|..+++.+.++++.++++..-=.+++.+.||+
T Consensus 119 ~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~g~~~t~D~F~~ 161 (235)
T 1z34_A 119 RFMDHDYPATASFDVVCALVDAAKELNIPAKVGKGFSTDLFYN 161 (235)
T ss_dssp HTTTSCCCCBCCHHHHHHHHHHHHHTTCCCEEEEEEECSCSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 2456654776899999999998887099659961046786647
No 8
>1q1g_A Uridine phosphorylase putative; transition state complex, transferase; HET: MTI; 2.02A {Plasmodium falciparum 3D7} SCOP: c.56.2.1 PDB: 1nw4_A* 3fow_A*
Probab=46.63 E-value=4.5 Score=20.55 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEHH
Q ss_conf 8814778999999999997649889979998599599745
Q 537021.9.peg.8 53 PNPSDADINMTQNIITTLNPLNIIVHDHIIIGKDAFVSFK 92 (97)
Q Consensus 53 ~~PS~~Di~~T~~l~~a~~~l~i~llDHiIv~~~~~~S~r 92 (97)
..|..+|.++++.+.++++.++++..--.+++.+.||+-+
T Consensus 127 ~~p~~ad~~l~~~l~~aa~~~~~~~~~G~v~T~D~FY~~~ 166 (276)
T 1q1g_A 127 DFPAVGDFDVYDTLNKCAQELNVPVFNGISVSSDMYYPNK 166 (276)
T ss_dssp TSCEECCHHHHHHHHHHHHHTTCCCEEEEEEEESCSSCCS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC
T ss_conf 7587699999999999999819984265453477563785
No 9
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=45.45 E-value=18 Score=17.07 Aligned_cols=49 Identities=10% Similarity=0.269 Sum_probs=42.7
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 999999997319689999556898988147789999999999976498899799
Q 537021.9.peg.8 28 REIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDHI 81 (97)
Q Consensus 28 r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDHi 81 (97)
-+..+.++..+-+++.+ -|+..|=++.++.|+++.+.+...|+.+---+
T Consensus 87 ~e~i~~ai~~GftSVMi-----D~S~l~~eeNi~~Tk~vv~~ah~~gv~VEaEl 135 (286)
T 1gvf_A 87 LDDIRRKVHAGVRSAMI-----DGSHFPFAENVKLVKSVVDFCHSQDCSVEAEL 135 (286)
T ss_dssp HHHHHHHHHTTCCEEEE-----CCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHCCCCEEEE-----ECCCCCHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 78999986168864876-----48989999999999999999986424267644
No 10
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=39.26 E-value=19 Score=16.92 Aligned_cols=38 Identities=21% Similarity=0.391 Sum_probs=22.2
Q ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEE
Q ss_conf 68999955689898814778999999999997-6498899799
Q 537021.9.peg.8 40 TSIILVHNHPSGNPNPSDADINMTQNIITTLN-PLNIIVHDHI 81 (97)
Q Consensus 40 ~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~-~l~i~llDHi 81 (97)
.-+.+--+||+ ++||..|+. .+|.+..+ .-+.-+++.+
T Consensus 17 ~Ei~~~v~h~g--~tpsr~ei~--~kla~~~~~~~~~vvv~~~ 55 (102)
T 1ywx_A 17 REIKFTVSFDA--ATPSIKDVK--MKLVAVLNANKQVLVVDTL 55 (102)
T ss_dssp EEEEEEEECSS--CCCCHHHHH--HHHHHHHTSCSTTEEEEEE
T ss_pred EEEEEEEECCC--CCCCHHHHH--HHHHHHHCCCCCEEEEEEC
T ss_conf 89999998899--998999999--9999977939788999806
No 11
>2b94_A Purine nucleoside phosphorylase; SGPP, structural genomics, PSI, protein structure initiative, PNP, UDP, ontario/toronto SGC; 1.85A {Plasmodium knowlesi} PDB: 3emv_A 1sq6_A 2bsx_A* 3enz_A*
Probab=38.08 E-value=7.4 Score=19.31 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEHH
Q ss_conf 8814778999999999997649889979998599599745
Q 537021.9.peg.8 53 PNPSDADINMTQNIITTLNPLNIIVHDHIIIGKDAFVSFK 92 (97)
Q Consensus 53 ~~PS~~Di~~T~~l~~a~~~l~i~llDHiIv~~~~~~S~r 92 (97)
..|..+|..+++.+.++++.++++..=-.+++.+.||+-+
T Consensus 148 ~~p~~ad~~l~~~l~~~a~~~~~~~~~G~i~S~D~FY~~~ 187 (267)
T 2b94_A 148 DFPAVADFEVYDTLNKVAQELEVPVFNGISLSSDLYYPHK 187 (267)
T ss_dssp TSCEECCHHHHHHHHHHHHHTTCCCEEEEEEEESSHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC
T ss_conf 7476599999999999999829984011276457664776
No 12
>1odk_A Purine nucleoside phosphorylase; alpha-beta protein, transferase, riken structural genomics/proteomics initiative, RSGI; 1.9A {Thermus thermophilus} SCOP: c.56.2.1 PDB: 1odj_A* 1odi_A 1odl_A
Probab=35.82 E-value=12 Score=17.97 Aligned_cols=40 Identities=18% Similarity=0.265 Sum_probs=32.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEE
Q ss_conf 8988147789999999999976498899799985995997
Q 537021.9.peg.8 51 GNPNPSDADINMTQNIITTLNPLNIIVHDHIIIGKDAFVS 90 (97)
Q Consensus 51 G~~~PS~~Di~~T~~l~~a~~~l~i~llDHiIv~~~~~~S 90 (97)
+.+.|..+|..+++.+.++++.++++..--.+++.+.+|+
T Consensus 122 ~~~~~~~~d~~l~~~l~~~~~~~~~~~~~G~~~s~D~f~~ 161 (235)
T 1odk_A 122 GRPYAPVPDPEVFRALWRRAEALGYPHRVGLVASEDAFYA 161 (235)
T ss_dssp TCCCCCCCCHHHHHHHHHHHHHTTCCEEEEEEEEESCTTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCEEC
T ss_conf 5676763217999999999997599749988975361242
No 13
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A*
Probab=34.06 E-value=27 Score=16.00 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=35.3
Q ss_pred HHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 99999731968999955689898814778999999999997649889979
Q 537021.9.peg.8 31 VQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDH 80 (97)
Q Consensus 31 ~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDH 80 (97)
++.++..+=++|.+ -|+..|=++.+..|+++.+.+...|+.+---
T Consensus 117 i~~ai~~GftSVMi-----DgS~l~~eeNi~~Tk~vv~~Ah~~gv~VEaE 161 (349)
T 3elf_A 117 VSKGGNPLFQSHMW-----DGSAVPIDENLAIAQELLKAAAAAKIILEIE 161 (349)
T ss_dssp HHTTCCCSCSEEEE-----CCTTSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHCCCCCCCEEE-----CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 99836479882687-----6999989999999999997630367432032
No 14
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=33.68 E-value=27 Score=15.96 Aligned_cols=50 Identities=16% Similarity=0.307 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 9999999997319689999556898988147789999999999976498899799
Q 537021.9.peg.8 27 IREIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDHI 81 (97)
Q Consensus 27 ~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDHi 81 (97)
.-+.++.|+..+-+||.+ -|+..|=++.++.|+++.+.+...|+.+---+
T Consensus 84 ~~e~i~~ai~~GftSVMi-----DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaEl 133 (305)
T 1rvg_A 84 SYESVLRALRAGFTSVMI-----DKSHEDFETNVRETRRVVEAAHAVGVTVEAEL 133 (305)
T ss_dssp SHHHHHHHHHTTCSEEEE-----CCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHCCCCEEEE-----CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 988899998749987986-----49988889999999999998615188766502
No 15
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=32.23 E-value=29 Score=15.82 Aligned_cols=50 Identities=10% Similarity=0.284 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 9999999997319689999556898988147789999999999976498899799
Q 537021.9.peg.8 27 IREIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDHI 81 (97)
Q Consensus 27 ~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDHi 81 (97)
--+.++.++..+=++|.+ -|+..|=++.++.|+++.+.+...|+.+---+
T Consensus 86 ~~e~i~~ai~~GftSVMi-----DgS~lp~eeNi~~T~~vve~Ah~~gv~VEaEl 135 (307)
T 3n9r_A 86 TFESCEKAVKAGFTSVMI-----DASHHAFEENLELTSKVVKMAHNAGVSVEAEL 135 (307)
T ss_dssp SHHHHHHHHHHTCSEEEE-----CCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHCCCCEEEE-----ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 999999999719986886-----09989999999999999999825398289874
No 16
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=31.99 E-value=29 Score=15.80 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=39.9
Q ss_pred ECCCCEEEEC-HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 4046358932-99999999973196899995568989881477899999999999
Q 537021.9.peg.8 17 RGTIDHVPVY-IREIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTL 70 (97)
Q Consensus 17 ~Gt~~~~~v~-~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~ 70 (97)
.|+.+.+... .-++++..-..+-.-+-.-|-||+-.+.||..|+..-...+...
T Consensus 59 ~~t~~~~~~~~e~~~~~~~~~~~l~~VGWYHSHP~~~~flS~~Dl~tQ~~yQ~~~ 113 (178)
T 2znr_A 59 SAGPDYCDMENVEELFNVQDQHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLML 113 (178)
T ss_dssp EEETTEEEECCHHHHHHHHHHHTCEEEEEEEECSSSCSCCCHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 6999850356899999998617861257895378867507999999999998558
No 17
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for structural genomics, JCSG; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A*
Probab=30.30 E-value=31 Score=15.63 Aligned_cols=50 Identities=18% Similarity=0.239 Sum_probs=33.8
Q ss_pred HHHHHHHHHHCCCEEEE-EEECCCCCC------CCCHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 99999999731968999-955689898------814778999999999997649889
Q 537021.9.peg.8 28 REIVQRCLELSATSIIL-VHNHPSGNP------NPSDADINMTQNIITTLNPLNIIV 77 (97)
Q Consensus 28 r~i~~~al~~~A~~vil-aHNHPsG~~------~PS~~Di~~T~~l~~a~~~l~i~l 77 (97)
-.+-+.|+..+|.++++ .|..|.... .|-++=.++-+++++..+.+|-++
T Consensus 293 ~~larAAvA~GaDGlfiE~Hp~P~~AlsDg~q~l~l~~l~~ll~~l~~i~~~vg~~~ 349 (350)
T 1vr6_A 293 IPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGVKV 349 (350)
T ss_dssp HHHHHHHHHHTCSEEEEEBCSCGGGCSSCGGGCBCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999998299889997088801078884024799999999999999999966547
No 18
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=30.14 E-value=31 Score=15.61 Aligned_cols=40 Identities=23% Similarity=0.436 Sum_probs=23.3
Q ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEEEE
Q ss_conf 68999955689898814778999999999997-649889979998
Q 537021.9.peg.8 40 TSIILVHNHPSGNPNPSDADINMTQNIITTLN-PLNIIVHDHIII 83 (97)
Q Consensus 40 ~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~-~l~i~llDHiIv 83 (97)
.-+.+--+||+ ++||..|+. .+|.+..+ .-+.-+++.+--
T Consensus 17 ~Ei~~~v~h~g--~Tpsr~ei~--~kla~~~~~~~~~vvv~~~~t 57 (101)
T 1xn9_A 17 RELDFIVKYEG--STPSRNDVR--NKLAAMLNAPLELLVIQRIKT 57 (101)
T ss_dssp EEEEEEEECSS--SCCCHHHHH--HHHHHHTTCCTTTEEEEEEEE
T ss_pred EEEEEEEECCC--CCCCHHHHH--HHHHHHHCCCCCEEEEECCEE
T ss_conf 89999998899--998999999--999996792968899974771
No 19
>2xrf_A Uridine phosphorylase 2; transferase; 2.30A {Homo sapiens}
Probab=29.02 E-value=19 Score=16.87 Aligned_cols=38 Identities=8% Similarity=0.141 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEEEECCCCEEE
Q ss_conf 881477899999999999764-98899799985995997
Q 537021.9.peg.8 53 PNPSDADINMTQNIITTLNPL-NIIVHDHIIIGKDAFVS 90 (97)
Q Consensus 53 ~~PS~~Di~~T~~l~~a~~~l-~i~llDHiIv~~~~~~S 90 (97)
..|..+|.++++.+.++++.+ +++..--++++.++||+
T Consensus 162 ~~pa~ad~~l~~~l~~~a~el~~~~~~~G~t~S~D~FY~ 200 (303)
T 2xrf_A 162 TRSTELDKELSEELFNCSKEIPNFPTLVGHTMCTYDFYE 200 (303)
T ss_dssp EEECBCCHHHHHHHHHHHTTSTTCCEEEEEEEECSCSSG
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
T ss_conf 336879999999999999985599849988544486415
No 20
>3ddo_A Urdpase, upase, uridine phosphorylase; transferase, cytoplasm, glycosyltransferase; 1.50A {Salmonella typhimurium} PDB: 1ryz_A 1sj9_A* 1y1q_A* 1y1s_A 1y1r_A 1zl2_A* 2hn9_A 1y1t_A* 2hsw_A 2hwu_A* 2pga_A* 2hrd_A 3dps_A 3fwp_A* 3c74_A* 2qdk_A 2iq5_A 2oec_A* 2i8a_A 2rj3_A ...
Probab=28.88 E-value=22 Score=16.56 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEE
Q ss_conf 988147789999999999976498899799985995997
Q 537021.9.peg.8 52 NPNPSDADINMTQNIITTLNPLNIIVHDHIIIGKDAFVS 90 (97)
Q Consensus 52 ~~~PS~~Di~~T~~l~~a~~~l~i~llDHiIv~~~~~~S 90 (97)
...|-.+|..+++.+.++++.++++..==.+++.+.||+
T Consensus 126 ~~~p~~~d~~l~~~~~~~~~~~~~~~~~G~~~S~D~Fy~ 164 (253)
T 3ddo_A 126 MEFPAVADFACTTALVEAAKSIGATTHVGVTASSDTFYP 164 (253)
T ss_dssp TTSCEECCHHHHHHHHHHHHHTTCCEEEEEEEEESCSSG
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCEEC
T ss_conf 666755587899999998886499727999801584056
No 21
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=26.16 E-value=37 Score=15.19 Aligned_cols=52 Identities=27% Similarity=0.314 Sum_probs=39.6
Q ss_pred EEECHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHH--HHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 89329999999997319689999556898988147789--99999999997649889979998
Q 537021.9.peg.8 23 VPVYIREIVQRCLELSATSIILVHNHPSGNPNPSDADI--NMTQNIITTLNPLNIIVHDHIII 83 (97)
Q Consensus 23 ~~v~~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di--~~T~~l~~a~~~l~i~llDHiIv 83 (97)
..+.|-++.+.|+..+|..+.+. ..-|+.|. ....+|.++++.-|++ |.+|+
T Consensus 642 ~QVppEEiV~kAIE~dADaIlVS-------qlvTQ~d~H~tn~p~Lie~L~~~G~R--DkIiv 695 (763)
T 3kp1_A 642 TSVPVEKLVDAAIELKADAILAS-------TIISHDDIHYKNMKRIHELAVEKGIR--DKIMI 695 (763)
T ss_dssp SSBCHHHHHHHHHHTTCSEEEEE-------CCCCGGGHHHHHHHHHHHHHHHTTCT--TTSEE
T ss_pred CCCCHHHHHHHHHHCCCCEEEEE-------HHHHHHHHHHHHHHHHHHHHHHCCCC--CCEEE
T ss_conf 76898999999997699999966-------56540333988899999999963888--87599
No 22
>2ac7_A Purine nucleoside phosphorylase; alpha/beta fold, adenosine, sulfate ION, transferase; HET: ADN; 1.70A {Bacillus cereus} SCOP: c.56.2.1 PDB: 1xe3_A
Probab=25.78 E-value=34 Score=15.39 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=32.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEE
Q ss_conf 8988147789999999999976498899799985995997
Q 537021.9.peg.8 51 GNPNPSDADINMTQNIITTLNPLNIIVHDHIIIGKDAFVS 90 (97)
Q Consensus 51 G~~~PS~~Di~~T~~l~~a~~~l~i~llDHiIv~~~~~~S 90 (97)
|.+.|-.+|..+.+++.++++..+++..-=.+.+.+.+|+
T Consensus 122 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~~~T~D~f~~ 161 (235)
T 2ac7_A 122 GFDFAPAANFDLLKKAYDAGTEKGLHVRVGNVLTADVFYR 161 (235)
T ss_dssp TCCCCCBCCHHHHHHHHHHHHHHTCCEEEEEEEECSCSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEECCEECCCCCCC
T ss_conf 9975876899999999999997099636722323786622
No 23
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 2j8q_A
Probab=23.17 E-value=42 Score=14.85 Aligned_cols=50 Identities=20% Similarity=0.436 Sum_probs=32.0
Q ss_pred HHHCCCEEEEEEEC-----------------CCCCCCCCHHHHHHH-HHHHHHHHHCCCEEEEEEEECC
Q ss_conf 97319689999556-----------------898988147789999-9999999764988997999859
Q 537021.9.peg.8 35 LELSATSIILVHNH-----------------PSGNPNPSDADINMT-QNIITTLNPLNIIVHDHIIIGK 85 (97)
Q Consensus 35 l~~~A~~vilaHNH-----------------PsG~~~PS~~Di~~T-~~l~~a~~~l~i~llDHiIv~~ 85 (97)
++....+|+++|-| |+|.+.|.+++++-- |+|.+-+..-+ ...+.+.||+
T Consensus 57 mRrSVegVlLvh~h~~PHVLLLQ~~~~~fkLPGG~l~~gE~e~egLkR~L~~~l~~~~-~~~~~w~vge 124 (208)
T 3bho_A 57 MRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQD-GVLQDWVIDD 124 (208)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEETTEEECSEEECCTTCCHHHHHHHHHHHHHCCCC------CEEEE
T ss_pred CCEEEEEEEEEEECCCCEEEEEEECCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCEEHHH
T ss_conf 8127899999970799869999827906888874036998578999999998628655-7766417012
No 24
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolase, D-tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A*
Probab=22.94 E-value=42 Score=14.82 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=43.4
Q ss_pred HHHHHHHCCCEEE-EEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECC
Q ss_conf 9999973196899-995568989881477899999999999764988997999859
Q 537021.9.peg.8 31 VQRCLELSATSII-LVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDHIIIGK 85 (97)
Q Consensus 31 ~~~al~~~A~~vi-laHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDHiIv~~ 85 (97)
.+.+.+.+|.++- ++.-||.+++.--.+-++.-+++.+.|...|++++=.+|+-+
T Consensus 116 v~~~~~~GadaVK~lv~~~~d~~~e~~~~q~~~l~~l~~~c~~~gip~llE~l~~~ 171 (332)
T 3iv3_A 116 IKRLKEAGADAVKFLLYYDVDGDPQVNVQKQAYIERIGSECQAEDIPFFLEILTYD 171 (332)
T ss_dssp HHHHHHTTCSEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECB
T ss_pred HHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 99998567888999974599841999999999999999999975997599972157
No 25
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A
Probab=21.25 E-value=46 Score=14.62 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=17.9
Q ss_pred CCEEEEEEEC--CC-CCCCCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 9689999556--89-8988147789999999999976498899
Q 537021.9.peg.8 39 ATSIILVHNH--PS-GNPNPSDADINMTQNIITTLNPLNIIVH 78 (97)
Q Consensus 39 A~~vilaHNH--Ps-G~~~PS~~Di~~T~~l~~a~~~l~i~ll 78 (97)
|=++|=.||| || .|-.+|-++. .++.+.+...|+..+
T Consensus 2 ~m~miDlH~Ht~~s~~DG~~s~ee~---~~~~~~A~~~G~~~i 41 (247)
T 2wje_A 2 AMGMIDIHSHIVFDVDDGPKSREES---KALLAESYRQGVRTI 41 (247)
T ss_dssp --CEEECCBCCSTTSSSSCSSHHHH---HHHHHHHHHTTEEEE
T ss_pred CCCEEEEEECCCCCCCCCCCCHHHH---HHHHHHHHHCCCCEE
T ss_conf 4205887676778877898999999---999999998799999
No 26
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=20.21 E-value=37 Score=15.18 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=10.2
Q ss_pred EEEECCCCCCCCCHHHHHHH
Q ss_conf 99556898988147789999
Q 537021.9.peg.8 44 LVHNHPSGNPNPSDADINMT 63 (97)
Q Consensus 44 laHNHPsG~~~PS~~Di~~T 63 (97)
--|||| |..++++.-
T Consensus 67 ~~HnH~-----Pd~~~~~~~ 81 (87)
T 2rpr_A 67 RSHCHQ-----PDLAGLEAL 81 (87)
T ss_dssp SCCSSC-----CCHHHHHHH
T ss_pred CCCCCC-----CCHHHHHHH
T ss_conf 687896-----976788987
Done!