RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= 537021.9.peg.816_1 (97 letters) >d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 121 Score = 27.3 bits (60), Expect = 0.38 Identities = 8/18 (44%), Positives = 14/18 (77%) Query: 45 VHNHPSGNPNPSDADINM 62 VH+HPS + PS+ D+++ Sbjct: 69 VHSHPSPSCRPSEEDLSL 86 >d1dmga_ c.22.1.1 (A:) Ribosomal protein L4 {Thermotoga maritima [TaxId: 2336]} Length = 225 Score = 25.9 bits (56), Expect = 1.1 Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Query: 35 LELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDHIIIGKDAF 88 ++LS ++ V + NPN S + I LN +++ +D++++ +D Sbjct: 166 VKLSGRNLPDVKVIIADNPNNSKNGEKAVR--IDGLNVFDMLKYDYLVLTRDMV 217 >d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Score = 25.4 bits (55), Expect = 1.5 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 3/46 (6%) Query: 34 CLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHD 79 C LS SI H D + + +N + +P+ I D Sbjct: 344 CYCLSGLSIA---QHFGSGAMLHDVVLGVPENALQPTHPVYNIGPD 386 >d1jzta_ c.104.1.1 (A:) Hypothetical protein YNL200c (YNU0_YEAST) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 243 Score = 24.3 bits (52), Expect = 2.9 Identities = 7/46 (15%), Positives = 17/46 (36%) Query: 6 HNILIADEVQSRGTIDHVPVYIREIVQRCLELSATSIILVHNHPSG 51 + I D + + + IV+ ++ I+ + P+G Sbjct: 129 KTLCIVDAIFGFSFKPPMREPFKGIVEELCKVQNIIPIVSVDVPTG 174 >d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 180 Score = 24.0 bits (52), Expect = 3.2 Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 1/28 (3%) Query: 27 IREIVQRCLELSATSIILVHNHPSGNPN 54 + E+ + + A I++V GNP Sbjct: 40 MEELAREAIIRGADRIVVVGERR-GNPG 66 >d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Length = 372 Score = 23.7 bits (50), Expect = 4.3 Identities = 8/77 (10%), Positives = 19/77 (24%) Query: 5 KHNILIADEVQSRGTIDHVPVYIREIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQ 64 L + ID + + + + ++ +H P + Sbjct: 149 GIEYLRKKGFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIG 208 Query: 65 NIITTLNPLNIIVHDHI 81 LNI + + Sbjct: 209 EGKGKGYNLNIPLPKGL 225 >d1wl7a1 b.67.2.1 (A:2-313) Arabinanase-TS {Bacillus thermodenitrificans [TaxId: 33940]} Length = 312 Score = 23.7 bits (50), Expect = 4.3 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 13/56 (23%) Query: 45 VHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDHIIIGKD----AFVSFKGLRI 96 VH HP GN N + D ++ ++ HD +I + F + G++I Sbjct: 1 VHFHPFGNVNFYEMDWSLKGDLWA---------HDPVIAKEGSRWYVFHTGSGIQI 47 >d2j01f1 c.22.1.1 (F:1-208) Ribosomal protein L4 {Thermus thermophilus [TaxId: 274]} Length = 208 Score = 23.6 bits (50), Expect = 4.9 Identities = 5/19 (26%), Positives = 12/19 (63%) Query: 70 LNPLNIIVHDHIIIGKDAF 88 LN +I+ + +++ DA+ Sbjct: 181 LNVYDIVRTERLVMDLDAW 199 >d1gnta_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein) {Desulfovibrio vulgaris [TaxId: 881]} Length = 553 Score = 23.2 bits (50), Expect = 6.3 Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 7/30 (23%) Query: 51 GNPNPSDADINMTQNIITTLNPLNIIVHDH 80 GNP + +I I++ H Sbjct: 222 GNPEITQVNIG-------VGKNPGILISGH 244 >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404 Score = 23.2 bits (49), Expect = 6.3 Identities = 7/14 (50%), Positives = 11/14 (78%), Gaps = 1/14 (7%) Query: 4 DKHNI-LIADEVQS 16 K+N+ +ADEVQ+ Sbjct: 217 KKYNVLFVADEVQT 230 >d1mgta1 a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransferase {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 81 Score = 23.0 bits (49), Expect = 6.7 Identities = 6/23 (26%), Positives = 10/23 (43%) Query: 71 NPLNIIVHDHIIIGKDAFVSFKG 93 NP I+V H ++ D + Sbjct: 45 NPYPIVVPCHRVVAHDGIGYYSS 67 >d2q07a2 c.18.1.4 (A:244-393) Uncharacterized protein AF0587 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 150 Score = 22.9 bits (49), Expect = 7.7 Identities = 5/24 (20%), Positives = 12/24 (50%) Query: 20 IDHVPVYIREIVQRCLELSATSII 43 + HV R++V+R + ++ Sbjct: 103 VAHVTGGYRKVVERVEDEVEAEVV 126 >d2gycc1 c.22.1.1 (C:1-198) Ribosomal protein L4 {Escherichia coli [TaxId: 562]} Length = 198 Score = 22.7 bits (48), Expect = 8.0 Identities = 5/18 (27%), Positives = 13/18 (72%) Query: 70 LNPLNIIVHDHIIIGKDA 87 ++P+++I D +++ DA Sbjct: 175 IDPVSLIAFDKVVMTADA 192 >d2zjrc1 c.22.1.1 (C:2-198) Ribosomal protein L4 {Deinococcus radiodurans [TaxId: 1299]} Length = 197 Score = 22.7 bits (48), Expect = 8.6 Identities = 6/19 (31%), Positives = 11/19 (57%) Query: 70 LNPLNIIVHDHIIIGKDAF 88 +N +I+ HD ++I A Sbjct: 174 VNVYDILRHDRLVIDAAAL 192 >d2f2ha3 b.71.1.4 (A:586-665) Putative glucosidase YicI, domain 3 {Escherichia coli [TaxId: 562]} Length = 80 Score = 22.5 bits (48), Expect = 9.5 Identities = 4/11 (36%), Positives = 7/11 (63%) Query: 19 TIDHVPVYIRE 29 +PVY+R+ Sbjct: 70 GFLSLPVYVRD 80 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.324 0.142 0.413 Gapped Lambda K H 0.267 0.0523 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 372,067 Number of extensions: 15366 Number of successful extensions: 58 Number of sequences better than 10.0: 1 Number of HSP's gapped: 58 Number of HSP's successfully gapped: 20 Length of query: 97 Length of database: 2,407,596 Length adjustment: 59 Effective length of query: 38 Effective length of database: 1,597,526 Effective search space: 60705988 Effective search space used: 60705988 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 47 (22.4 bits)