RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 537021.9.peg.816_1
(97 letters)
>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 121
Score = 27.3 bits (60), Expect = 0.38
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 45 VHNHPSGNPNPSDADINM 62
VH+HPS + PS+ D+++
Sbjct: 69 VHSHPSPSCRPSEEDLSL 86
>d1dmga_ c.22.1.1 (A:) Ribosomal protein L4 {Thermotoga maritima
[TaxId: 2336]}
Length = 225
Score = 25.9 bits (56), Expect = 1.1
Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 35 LELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDHIIIGKDAF 88
++LS ++ V + NPN S + I LN +++ +D++++ +D
Sbjct: 166 VKLSGRNLPDVKVIIADNPNNSKNGEKAVR--IDGLNVFDMLKYDYLVLTRDMV 217
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase,
beta-subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 401
Score = 25.4 bits (55), Expect = 1.5
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 34 CLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHD 79
C LS SI H D + + +N + +P+ I D
Sbjct: 344 CYCLSGLSIA---QHFGSGAMLHDVVLGVPENALQPTHPVYNIGPD 386
>d1jzta_ c.104.1.1 (A:) Hypothetical protein YNL200c (YNU0_YEAST)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 24.3 bits (52), Expect = 2.9
Identities = 7/46 (15%), Positives = 17/46 (36%)
Query: 6 HNILIADEVQSRGTIDHVPVYIREIVQRCLELSATSIILVHNHPSG 51
+ I D + + + IV+ ++ I+ + P+G
Sbjct: 129 KTLCIVDAIFGFSFKPPMREPFKGIVEELCKVQNIIPIVSVDVPTG 174
>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein
{Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 180
Score = 24.0 bits (52), Expect = 3.2
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 27 IREIVQRCLELSATSIILVHNHPSGNPN 54
+ E+ + + A I++V GNP
Sbjct: 40 MEELAREAIIRGADRIVVVGERR-GNPG 66
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
63363]}
Length = 372
Score = 23.7 bits (50), Expect = 4.3
Identities = 8/77 (10%), Positives = 19/77 (24%)
Query: 5 KHNILIADEVQSRGTIDHVPVYIREIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQ 64
L + ID + + + + ++ +H P +
Sbjct: 149 GIEYLRKKGFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIG 208
Query: 65 NIITTLNPLNIIVHDHI 81
LNI + +
Sbjct: 209 EGKGKGYNLNIPLPKGL 225
>d1wl7a1 b.67.2.1 (A:2-313) Arabinanase-TS {Bacillus
thermodenitrificans [TaxId: 33940]}
Length = 312
Score = 23.7 bits (50), Expect = 4.3
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 13/56 (23%)
Query: 45 VHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDHIIIGKD----AFVSFKGLRI 96
VH HP GN N + D ++ ++ HD +I + F + G++I
Sbjct: 1 VHFHPFGNVNFYEMDWSLKGDLWA---------HDPVIAKEGSRWYVFHTGSGIQI 47
>d2j01f1 c.22.1.1 (F:1-208) Ribosomal protein L4 {Thermus
thermophilus [TaxId: 274]}
Length = 208
Score = 23.6 bits (50), Expect = 4.9
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 70 LNPLNIIVHDHIIIGKDAF 88
LN +I+ + +++ DA+
Sbjct: 181 LNVYDIVRTERLVMDLDAW 199
>d1gnta_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein)
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 553
Score = 23.2 bits (50), Expect = 6.3
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 7/30 (23%)
Query: 51 GNPNPSDADINMTQNIITTLNPLNIIVHDH 80
GNP + +I I++ H
Sbjct: 222 GNPEITQVNIG-------VGKNPGILISGH 244
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 23.2 bits (49), Expect = 6.3
Identities = 7/14 (50%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
Query: 4 DKHNI-LIADEVQS 16
K+N+ +ADEVQ+
Sbjct: 217 KKYNVLFVADEVQT 230
>d1mgta1 a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransferase
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 81
Score = 23.0 bits (49), Expect = 6.7
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 71 NPLNIIVHDHIIIGKDAFVSFKG 93
NP I+V H ++ D +
Sbjct: 45 NPYPIVVPCHRVVAHDGIGYYSS 67
>d2q07a2 c.18.1.4 (A:244-393) Uncharacterized protein AF0587
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 150
Score = 22.9 bits (49), Expect = 7.7
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 20 IDHVPVYIREIVQRCLELSATSII 43
+ HV R++V+R + ++
Sbjct: 103 VAHVTGGYRKVVERVEDEVEAEVV 126
>d2gycc1 c.22.1.1 (C:1-198) Ribosomal protein L4 {Escherichia coli
[TaxId: 562]}
Length = 198
Score = 22.7 bits (48), Expect = 8.0
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 70 LNPLNIIVHDHIIIGKDA 87
++P+++I D +++ DA
Sbjct: 175 IDPVSLIAFDKVVMTADA 192
>d2zjrc1 c.22.1.1 (C:2-198) Ribosomal protein L4 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 197
Score = 22.7 bits (48), Expect = 8.6
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 70 LNPLNIIVHDHIIIGKDAF 88
+N +I+ HD ++I A
Sbjct: 174 VNVYDILRHDRLVIDAAAL 192
>d2f2ha3 b.71.1.4 (A:586-665) Putative glucosidase YicI, domain 3
{Escherichia coli [TaxId: 562]}
Length = 80
Score = 22.5 bits (48), Expect = 9.5
Identities = 4/11 (36%), Positives = 7/11 (63%)
Query: 19 TIDHVPVYIRE 29
+PVY+R+
Sbjct: 70 GFLSLPVYVRD 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.142 0.413
Gapped
Lambda K H
0.267 0.0523 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 372,067
Number of extensions: 15366
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 20
Length of query: 97
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 38
Effective length of database: 1,597,526
Effective search space: 60705988
Effective search space used: 60705988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.4 bits)