HHsearch alignment for GI: peg_817 and conserved domain: TIGR00575
>TIGR00575 dnlj DNA ligase, NAD-dependent; InterPro: IPR001679 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase: one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC). This family is predominantly composed of NAD-dependent bacterial DNA ligases. They are proteins of about 75 to 85 Kd whose sequence is well conserved , . They also show similarity to yicF, an Escherichia coli hypothetical protein of 63 Kd.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair.
Probab=95.90 E-value=0.024 Score=35.95 Aligned_cols=88 Identities=19% Similarity=0.123 Sum_probs=60.3
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCHH-----------HHHHCCCCCHHHHHHHHHHHHHH-HH--------
Q ss_conf 99733799898899999999737997898509978-----------99737898899999975499999-99--------
Q 537021.9.peg.8 45 LILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLH-----------LLQEINRIGKRVALELKLVSVAS-QR-------- 104 (148)
Q Consensus 45 llL~~g~~~~~~~~lA~~lL~~fGsL~~ll~as~~-----------eL~~i~GIG~aka~~l~a~~El~-rR-------- 104 (148)
T Consensus 520 lL~aLGIr~-VG~~~A~~La~~f~tl~~L~~A~~e~~~~~~~f~~s~L~~~~g~G~~vA~~~~~~F~~~~~~~~qPYRta 598 (706)
T TIGR00575 520 LLFALGIRH-VGEVTAKLLAKHFGTLDKLKAASLETLESIYQFDRSELLSVEGVGPKVAESIVNFFHDPNNLSLQPYRTA 598 (706)
T ss_pred HHHHCCCHH-HHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 998628603-5799999999855886899850821677887516055641014027899999998712000135604689
Q ss_pred HHHHHHHH-CCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99987640-677889899999999984597
Q 537021.9.peg.8 105 ILKANWSI-KKFLTPGQPCLISVERHYPMK 133 (148)
Q Consensus 105 ~~~~~~~~-~~~l~s~~~v~~yl~~~l~~~ 133 (148)
T Consensus 599 ~~~~~L~~~gv~~~~~D~~~~LL~~~~~~~ 628 (706)
T TIGR00575 599 ELIEKLEELGVNMESEDEFCRLLDQALKEK 628 (706)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999883163101135787776420110