HHsearch alignment for GI: peg_817 and conserved domain: TIGR00608
>TIGR00608 radc DNA repair protein RadC; InterPro: IPR001405 RadC is a DNA repair protein found in many bacteria. They share a region of similarity at the C-terminus that contains two perfectly conserved histidine residues.; GO: 0006281 DNA repair.
Probab=100.00 E-value=2.5e-36 Score=255.48 Aligned_cols=122 Identities=23% Similarity=0.306 Sum_probs=120.6
Q ss_pred HHHHHHHHCCHHHCCHHHHHHHHHHCCCCCC--CHHHHHHHHHHHCC-----CHHHHHCCCHHHHHHCCCCCHHHHHHHH
Q ss_conf 1999998239221898999999973379989--88999999997379-----9789850997899737898899999975
Q 537021.9.peg.8 24 RLRDRFLQKGENALAYYEILELILFRLIPRK--DTKSIAKALLKRFA-----TLGGVFGAPLHLLQEINRIGKRVALELK 96 (148)
Q Consensus 24 R~RErll~~G~~~LsD~ELLallL~~g~~~~--~~~~lA~~lL~~fG-----sL~~ll~as~~eL~~i~GIG~aka~~l~ 96 (148)
T Consensus 1 ~PREkLLk~Ga~~L~d~ELLAi~L~tG~~k~k~dVl~Lsk~lL~~fG~~~~d~l~~L~~~~~~~L~~v~GiG~ak~~qlk 80 (223)
T TIGR00608 1 MPREKLLKFGAEALSDYELLAILLRTGTKKGKADVLSLSKELLKQFGQEELDSLDLLLSAEPEELSSVPGIGLAKAIQLK 80 (223)
T ss_pred CCHHHHHHCCHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCHHCCCCHHHHHCCCHHHHHCCCCCHHHHHHHHH
T ss_conf 95032333163005646799999843899976662678999998707000130014321585785046885088999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECC
Q ss_conf 4999999999987640677889899999999984597800025212102
Q 537021.9.peg.8 97 LVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN 145 (148)
Q Consensus 97 a~~El~rR~~~~~~~~~~~l~s~~~v~~yl~~~l~~~~~E~F~vLF~~N 145 (148)
T Consensus 81 a~~El~~R~~~~~~~~~~~i~sPe~~~~~l~~~l~~~~~E~F~vlfLD~ 129 (223)
T TIGR00608 81 AIVELAKRYAKSRMLERPVIRSPEAAAEFLSTDLAHEEREHFMVLFLDL 129 (223)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 9999986775244214666489899999999863347642678887168