HHsearch alignment of GI: peg_817 and MMDB domain: 3c65_A_

>3c65_A (A:) Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=96.31  E-value=0.00073  Score=45.33  Aligned_cols=49  Identities=27%  Similarity=0.219  Sum_probs=39.3

Q ss_pred             CCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             379989889999999973799789850997899737898899999975499
Q 537021.9.peg.8   49 RLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVS   99 (148)
Q Consensus        49 ~g~~~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~~   99 (148)
                      .+.|+- -...|+.|+++|||+..+.+||.+||++| |||+.+|..|...+
T Consensus       176 ~~I~~I-G~~~a~~Ll~~Fgsl~~i~~As~eeL~~v-giG~~~A~~I~~~f  224 (226)
T 3c65_A          176 DDIPGV-GEKRKKALLNYFGSVKKMKEATVEELQRA-NIPRAVAEKIYEKL  224 (226)
T ss_dssp             ---------------------------------------------------
T ss_pred             HHHHHH-CHHHHHHHHHHCCCHHHHHHCCHHHHHHC-CCCHHHHHHHHHHH
T ss_conf             899874-79999999998589999983999999877-99999999999996