HHsearch alignment of GI: peg_817 and MMDB domain: 3c65_A_
>3c65_A (A:) Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=96.31 E-value=0.00073 Score=45.33 Aligned_cols=49 Identities=27% Similarity=0.219 Sum_probs=39.3
Q ss_pred CCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 379989889999999973799789850997899737898899999975499
Q 537021.9.peg.8 49 RLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVS 99 (148)
Q Consensus 49 ~g~~~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~~ 99 (148)
.+.|+- -...|+.|+++|||+..+.+||.+||++| |||+.+|..|...+
T Consensus 176 ~~I~~I-G~~~a~~Ll~~Fgsl~~i~~As~eeL~~v-giG~~~A~~I~~~f 224 (226)
T 3c65_A 176 DDIPGV-GEKRKKALLNYFGSVKKMKEATVEELQRA-NIPRAVAEKIYEKL 224 (226)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHH-CHHHHHHHHHHCCCHHHHHHCCHHHHHHC-CCCHHHHHHHHHHH
T ss_conf 899874-79999999998589999983999999877-99999999999996