HHsearch results for GI: peg_817 and protein with PDBid: 1ngn_A

>1ngn_A Methyl-CPG binding protein MBD4; mismacth repair in methylated DNA, DNA binding protein; 2.10A {Mus musculus} SCOP: a.96.1.2 PDB: 3iho_A
Probab=95.56  E-value=0.022  Score=34.78  Aligned_cols=61  Identities=13%  Similarity=0.114  Sum_probs=52.4

Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHH-CCCCC--HHHHHHHHHHHH
Q ss_conf             99999997337998988999999997379978985099789973-78988--999999754999
Q 537021.9.peg.8   40 YEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE-INRIG--KRVALELKLVSV  100 (148)
Q Consensus        40 ~ELLallL~~g~~~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~-i~GIG--~aka~~l~a~~E  100 (148)
                      .-|++.+|..-++...|.....+|+++|.+...+..|+.++|.. |.++|  ..||..|+...+
T Consensus        33 ~~LVa~ILsqqT~~~~v~~v~~~l~~~~pt~~~la~a~~~el~~~i~~lG~~~~KAk~I~~~a~   96 (155)
T 1ngn_A           33 KLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKPLGLYDLRAKTIIKFSD   96 (155)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHSCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             9999999987096999999999999988899999873499999997200268799999999971