HHsearch results for GI: peg_817 and protein with PDBid: 1ngn_A
>1ngn_A Methyl-CPG binding protein MBD4; mismacth repair in methylated DNA, DNA binding protein; 2.10A {Mus musculus} SCOP: a.96.1.2 PDB: 3iho_A
Probab=95.56 E-value=0.022 Score=34.78 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=52.4
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHH-CCCCC--HHHHHHHHHHHH
Q ss_conf 99999997337998988999999997379978985099789973-78988--999999754999
Q 537021.9.peg.8 40 YEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE-INRIG--KRVALELKLVSV 100 (148)
Q Consensus 40 ~ELLallL~~g~~~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~-i~GIG--~aka~~l~a~~E 100 (148)
.-|++.+|..-++...|.....+|+++|.+...+..|+.++|.. |.++| ..||..|+...+
T Consensus 33 ~~LVa~ILsqqT~~~~v~~v~~~l~~~~pt~~~la~a~~~el~~~i~~lG~~~~KAk~I~~~a~ 96 (155)
T 1ngn_A 33 KLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKPLGLYDLRAKTIIKFSD 96 (155)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHSCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999999987096999999999999988899999873499999997200268799999999971