HHsearch results for GI: peg_817 and protein with PDBid: 2a1j_A

>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*

Probab=96.71  E-value=0.0012  Score=43.08  Aligned_cols=45  Identities=16%  Similarity=0.193  Sum_probs=36.7

Q ss_pred             CCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf             99898899999999737997898509978997378988999999754
Q 537021.9.peg.8   51 IPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKL   97 (148)
Q Consensus        51 ~~~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a   97 (148)
                      .|+-..+. ++.|+.+|||+.++.+||.+||.+|.| |+..|..|.-
T Consensus         9 IPGIg~~~-~~~Ll~~fgSi~~l~~as~eeL~~v~G-~~~~A~~i~~   53 (63)
T 2a1j_A            9 MPGVNAKN-CRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYD   53 (63)
T ss_dssp             STTCCHHH-HHHHHHHCSSHHHHHTCCHHHHHHHHS-CHHHHHHHHH
T ss_pred             CCCCCHHH-HHHHHHHCCCHHHHHHCCHHHHHHCCC-CHHHHHHHHH
T ss_conf             99988999-999999867999998799999987869-8999999999