HHSEARCH alignment of GI: peg_817 and SCOP domain: d2a1ja1

Alignment
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.94  E-value=0.00034  Score=44.97  Aligned_cols=46  Identities=15%  Similarity=0.174  Sum_probs=37.6

Q ss_pred             CCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf             799898899999999737997898509978997378988999999754
Q 537021.9.peg.8   50 LIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKL   97 (148)
Q Consensus        50 g~~~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a   97 (148)
                      ..|+-..+. ++.|+++|||+.++.+||.+||+++.| |+..|..|.-
T Consensus         7 ~iPGIg~~~-~~~Ll~~f~Si~~l~~As~~eL~~v~G-~~~~A~~i~~   52 (62)
T d2a1ja1           7 KMPGVNAKN-CRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYD   52 (62)
T ss_dssp             TSTTCCHHH-HHHHHHHCSSHHHHHTCCHHHHHHHHS-CHHHHHHHHH
T ss_pred             CCCCCCHHH-HHHHHHHHCCHHHHHHCCHHHHHHCCC-CHHHHHHHHH
T ss_conf             699999999-999999852499998699999977859-5899999999


SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: RuvA domain 2-like
family: Hef domain-like
domain: DNA repair endonuclease XPF
species: Human (Homo sapiens) [TaxId: 9606]