HHSEARCH alignment of GI: peg_817 and SCOP domain: d2bgwa1

Alignment

Probab=98.26  E-value=2e-06  Score=59.38  Aligned_cols=63  Identities=24%  Similarity=0.383  Sum_probs=56.9

Q ss_pred             HCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             1898999999973379989889999999973799789850997899737898899999975499
Q 537021.9.peg.8   36 ALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVS   99 (148)
Q Consensus        36 ~LsD~ELLallL~~g~~~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~~   99 (148)
                      .++|.+.+.+.+-++.|+-.-. .|+.|+++|||+..+.+||+++|.+|+|||+.+|..|...+
T Consensus         3 ~~~~~~~~~~~~L~~IpgIG~~-~a~~L~~~F~s~~~l~~As~eeL~~v~GIG~~~A~~I~~~~   65 (70)
T d2bgwa1           3 RLSDVREWQLYILQSFPGIGRR-TAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKIL   65 (70)
T ss_dssp             CCCHHHHHHHHHHHTSTTCCHH-HHHHHHHHHSSHHHHTTCCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHCCCCCCCHH-HHHHHHHHHCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             8588999899998089995799-99999998298899988699999757998999999999998

SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: RuvA domain 2-like
family: Hef domain-like
domain: DNA repair endonuclease XPF
species: Aeropyrum pernix [TaxId: 56636]