Query 537021.9.peg.817_1
Match_columns 148
No_of_seqs 127 out of 965
Neff 6.6
Searched_HMMs 13730
Date Wed May 25 00:26:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_817.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bgwa1 a.60.2.5 (A:160-229) D 98.3 2E-06 1.4E-10 59.4 8.1 63 36-99 3-65 (70)
2 d1x2ia1 a.60.2.5 (A:2-69) ATP- 97.9 2.9E-05 2.1E-09 51.9 8.0 61 37-99 2-62 (68)
3 d1kfta_ a.60.2.3 (A:) Excinucl 97.6 2E-05 1.5E-09 52.9 3.8 39 59-97 14-52 (56)
4 d2a1jb1 a.60.2.5 (B:219-296) D 97.6 3.7E-05 2.7E-09 51.2 4.4 49 50-99 23-71 (78)
5 d1dgsa1 a.60.2.2 (A:401-581) N 97.2 0.00044 3.2E-08 44.2 6.4 58 42-100 103-160 (181)
6 d2a1ja1 a.60.2.5 (A:837-898) D 96.9 0.00034 2.5E-08 45.0 3.9 46 50-97 7-52 (62)
7 d2i1qa1 a.60.4.1 (A:5-64) DNA 96.9 0.00096 7E-08 42.1 5.8 40 58-97 10-50 (60)
8 d1pzna1 a.60.4.1 (A:35-95) DNA 96.4 0.002 1.4E-07 40.0 4.5 40 58-97 12-52 (61)
9 d1keaa_ a.96.1.2 (A:) Thymine- 96.0 0.008 5.8E-07 36.1 6.1 61 35-98 69-132 (217)
10 d1keaa_ a.96.1.2 (A:) Thymine- 95.8 0.0044 3.2E-07 37.8 4.1 65 39-103 34-101 (217)
11 d1rrqa1 a.96.1.2 (A:9-229) Cat 95.3 0.014 1E-06 34.5 5.0 61 35-98 64-126 (221)
12 d1pu6a_ a.96.1.5 (A:) 3-Methyl 95.2 0.015 1.1E-06 34.4 5.1 94 34-131 71-178 (217)
13 d1kg2a_ a.96.1.2 (A:) Catalyti 95.1 0.022 1.6E-06 33.3 5.5 59 36-97 67-127 (224)
14 d1ngna_ a.96.1.2 (A:) Mismatch 95.0 0.025 1.8E-06 33.0 5.7 61 40-100 22-85 (144)
15 d1orna_ a.96.1.1 (A:) Endonucl 94.7 0.017 1.2E-06 34.0 4.3 94 35-132 66-171 (214)
16 d2abka_ a.96.1.1 (A:) Endonucl 94.2 0.018 1.3E-06 33.8 3.5 105 22-131 47-168 (211)
17 d1kg2a_ a.96.1.2 (A:) Catalyti 94.2 0.047 3.4E-06 31.1 5.5 59 39-97 31-91 (224)
18 d1rrqa1 a.96.1.2 (A:9-229) Cat 94.0 0.056 4.1E-06 30.6 5.6 59 40-98 30-90 (221)
19 d2noha1 a.96.1.3 (A:136-325) 8 93.6 0.062 4.5E-06 30.3 5.2 51 47-97 64-121 (190)
20 d1szpa1 a.60.4.1 (A:81-144) DN 93.5 0.055 4E-06 30.7 4.9 40 59-98 15-55 (64)
21 d1orna_ a.96.1.1 (A:) Endonucl 92.6 0.14 1E-05 28.1 5.9 64 39-102 31-97 (214)
22 d2abka_ a.96.1.1 (A:) Endonucl 92.3 0.052 3.8E-06 30.8 3.3 64 39-102 30-96 (211)
23 d1cuka2 a.60.2.1 (A:65-142) DN 91.1 0.16 1.2E-05 27.7 4.8 61 40-105 5-68 (78)
24 d1b22a_ a.60.4.1 (A:) DNA repa 89.8 0.1 7.6E-06 28.9 2.9 39 60-98 23-62 (70)
25 d1ixra1 a.60.2.1 (A:63-135) DN 89.7 0.23 1.7E-05 26.6 4.6 55 40-97 6-63 (73)
26 d1doqa_ a.60.3.1 (A:) C-termin 89.5 0.36 2.6E-05 25.5 5.4 41 60-100 19-61 (69)
27 d1bvsa2 a.60.2.1 (A:64-134) DN 88.9 0.26 1.9E-05 26.3 4.4 54 40-96 5-61 (71)
28 d3bzka1 a.60.2.6 (A:474-563) T 86.6 0.39 2.8E-05 25.2 4.1 30 71-100 27-56 (90)
29 d2axtu1 a.60.12.2 (U:37-134) P 86.3 0.04 2.9E-06 31.6 -1.1 36 61-96 9-44 (98)
30 d1u9la_ a.60.4.2 (A:) Transcri 85.9 0.72 5.2E-05 23.5 5.2 40 58-97 17-57 (68)
31 d2e1fa1 a.60.8.1 (A:1142-1235) 84.9 0.94 6.9E-05 22.7 5.4 47 70-116 46-92 (94)
32 d2edua1 a.60.2.7 (A:8-98) KIF2 83.7 0.68 5E-05 23.6 4.2 28 72-99 26-53 (91)
33 d1lb2b_ a.60.3.1 (B:) C-termin 83.4 1.3 9.5E-05 21.8 5.6 40 60-99 17-58 (72)
34 d2fmpa2 a.60.12.1 (A:92-148) D 82.1 0.19 1.4E-05 27.3 0.9 44 77-123 5-48 (57)
35 d2duya1 a.60.2.7 (A:11-75) Unc 81.2 0.53 3.9E-05 24.3 2.9 28 72-99 10-37 (65)
36 d1z3eb1 a.60.3.1 (B:245-311) C 80.2 1.9 0.00014 20.8 5.5 42 59-100 17-60 (67)
37 d1kfta_ a.60.2.3 (A:) Excinucl 79.1 0.4 2.9E-05 25.1 1.7 48 80-127 3-55 (56)
38 d1jmsa3 a.60.12.1 (A:243-302) 72.9 0.84 6.1E-05 23.0 2.0 44 77-123 6-50 (60)
39 d2odgc1 a.140.1.1 (C:2-47) Inn 72.4 1.7 0.00012 21.1 3.4 33 34-66 3-35 (46)
40 d2csba4 a.60.2.4 (A:465-519) T 68.7 3.6 0.00026 19.0 5.1 39 57-96 14-52 (55)
41 d1wuda1 a.60.8.1 (A:530-606) H 66.5 3.9 0.00028 18.7 4.3 35 71-105 38-73 (77)
42 d2bcqa2 a.60.12.1 (A:329-385) 66.3 1.8 0.00013 20.8 2.6 42 78-123 7-48 (57)
43 d2fmpa1 a.60.6.1 (A:10-91) DNA 64.0 3.2 0.00023 19.3 3.5 46 53-102 26-71 (82)
44 d2bcqa1 a.60.6.1 (A:252-327) D 61.9 3.7 0.00027 18.9 3.5 44 55-102 26-69 (76)
45 d1mpga1 a.96.1.3 (A:100-282) 3 61.3 4.9 0.00036 18.1 7.9 31 69-100 58-88 (183)
46 d2csba1 a.60.2.4 (A:351-409) T 49.6 2.9 0.00021 19.6 1.3 29 57-85 14-42 (59)
47 d1b43a1 a.60.7.1 (A:220-339) F 48.9 4 0.00029 18.7 1.9 27 69-96 8-34 (120)
48 d1rxwa1 a.60.7.1 (A:220-324) F 47.0 4.2 0.00031 18.5 1.8 17 59-75 28-44 (105)
49 d1a77a1 a.60.7.1 (A:209-316) F 46.6 4.3 0.00032 18.4 1.8 17 59-75 29-45 (108)
50 d1jmsa1 a.60.6.1 (A:148-242) T 46.4 3.4 0.00025 19.1 1.2 44 55-102 42-85 (95)
51 d2p6ra2 a.289.1.2 (A:489-686) 45.3 5.9 0.00043 17.6 2.3 18 78-95 143-160 (198)
52 d2gy9m1 a.156.1.1 (M:1-114) Ri 45.0 6.9 0.00051 17.1 2.6 24 79-102 16-39 (114)
53 d1vdda_ e.49.1.1 (A:) Recombin 42.0 8.2 0.00059 16.7 2.6 20 78-97 11-30 (199)
54 d2uubm1 a.156.1.1 (M:2-126) Ri 39.1 8.3 0.00061 16.6 2.3 24 79-102 16-39 (125)
55 d1ul1x1 a.60.7.1 (X:218-357) F 35.6 8.5 0.00062 16.6 1.9 27 50-77 20-46 (140)
56 d1xo1a1 a.60.7.1 (A:186-290) T 35.4 3.2 0.00023 19.3 -0.4 26 50-76 23-48 (105)
57 d1v4aa1 a.24.16.4 (A:287-437) 25.9 14 0.001 15.1 1.7 92 30-139 30-132 (151)
58 d1u6za3 c.55.1.8 (A:136-312) E 25.6 7.8 0.00057 16.8 0.3 51 70-120 111-161 (177)
59 d2i5ha1 e.71.1.1 (A:16-195) Hy 23.7 9.1 0.00066 16.4 0.3 74 59-133 96-171 (180)
60 d2csba3 a.60.2.4 (A:410-464) T 23.6 20 0.0015 14.1 4.5 37 57-93 12-52 (55)
61 d5csma_ a.130.1.2 (A:) Alloste 23.2 15 0.0011 15.0 1.3 37 86-122 139-176 (256)
62 d1gm5a2 b.40.4.9 (A:106-285) R 22.9 8.7 0.00063 16.5 0.1 18 79-96 10-27 (180)
63 d1mnga2 d.44.1.1 (A:93-203) Mn 22.4 21 0.0015 14.0 2.3 38 51-88 2-39 (111)
No 1
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]}
Probab=98.26 E-value=2e-06 Score=59.38 Aligned_cols=63 Identities=24% Similarity=0.383 Sum_probs=56.9
Q ss_pred HCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 1898999999973379989889999999973799789850997899737898899999975499
Q 537021.9.peg.8 36 ALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVS 99 (148)
Q Consensus 36 ~LsD~ELLallL~~g~~~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~~ 99 (148)
.++|.+.+.+.+-++.|+-.-. .|+.|+++|||+..+.+||+++|.+|+|||+.+|..|...+
T Consensus 3 ~~~~~~~~~~~~L~~IpgIG~~-~a~~L~~~F~s~~~l~~As~eeL~~v~GIG~~~A~~I~~~~ 65 (70)
T d2bgwa1 3 RLSDVREWQLYILQSFPGIGRR-TAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKIL 65 (70)
T ss_dssp CCCHHHHHHHHHHHTSTTCCHH-HHHHHHHHHSSHHHHTTCCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCCCCHH-HHHHHHHHHCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 8588999899998089995799-99999998298899988699999757998999999999998
No 2
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=97.89 E-value=2.9e-05 Score=51.87 Aligned_cols=61 Identities=31% Similarity=0.496 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 898999999973379989889999999973799789850997899737898899999975499
Q 537021.9.peg.8 37 LAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVS 99 (148)
Q Consensus 37 LsD~ELLallL~~g~~~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~~ 99 (148)
++-.|....+| .|.|+-.-. .|+.|+++|||+..+.+|+.++|.+|+|||+.+|..|.-.+
T Consensus 2 ~~~~~~~~~~L-~~I~gIG~~-~a~~L~~~f~s~~~i~~As~eeL~~i~GIG~~~A~~I~~~~ 62 (68)
T d1x2ia1 2 LTLAERQRLIV-EGLPHVSAT-LARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRVI 62 (68)
T ss_dssp CCHHHHHHHHH-TTSTTCCHH-HHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-CCCCCCCHH-HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 98899999998-189996899-99999997499999988589999727996999999999998
No 3
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=97.62 E-value=2e-05 Score=52.90 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=36.4
Q ss_pred HHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999999737997898509978997378988999999754
Q 537021.9.peg.8 59 IAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKL 97 (148)
Q Consensus 59 lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a 97 (148)
.|+.|+++|||+.++.+||++||.+|+|||+.+|..|.-
T Consensus 14 ~a~~L~~~F~s~~~i~~As~eeL~~v~GIg~~~A~~I~~ 52 (56)
T d1kfta_ 14 RRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFW 52 (56)
T ss_dssp HHHHHHHHHSCHHHHHHCCHHHHTTSSSTTSHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 999999993999999986499998169979999999999
No 4
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.55 E-value=3.7e-05 Score=51.16 Aligned_cols=49 Identities=22% Similarity=0.196 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 79989889999999973799789850997899737898899999975499
Q 537021.9.peg.8 50 LIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVS 99 (148)
Q Consensus 50 g~~~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~~ 99 (148)
+.++- -...|+.|+++|||+.++.+|+.++|..|+|||+.+|..|.-.+
T Consensus 23 ~I~gI-g~~~a~~L~~~F~s~~~i~~A~~eeL~~i~GiG~~~A~~i~~~f 71 (78)
T d2a1jb1 23 TVKSV-NKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVL 71 (78)
T ss_dssp TSTTC-CHHHHHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHH
T ss_pred CCCCC-CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89975-99999999999398199885527888875053399999999998
No 5
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]}
Probab=97.20 E-value=0.00044 Score=44.23 Aligned_cols=58 Identities=22% Similarity=0.326 Sum_probs=47.4
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999733799898899999999737997898509978997378988999999754999
Q 537021.9.peg.8 42 ILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSV 100 (148)
Q Consensus 42 LLallL~~g~~~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~~E 100 (148)
|=-+|-..|.|+.- ...|+.|.++||++..+.+|+.++|..|+|||+..|..|..-+.
T Consensus 103 l~r~l~aLGI~~vG-~~~Ak~La~~f~sl~~l~~as~eeL~~I~GIG~~~A~si~~ff~ 160 (181)
T d1dgsa1 103 LERLLYALGLPGVG-EVLARNLARRFGTMDRLLEASLEELIEVEEVGELTARAILETLK 160 (181)
T ss_dssp HHHHHHHTTCSSCC-HHHHHHHHHTTSBHHHHTTCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 89999998754344-77899999876200255412789886107827999999999987
No 6
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.94 E-value=0.00034 Score=44.97 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=37.6
Q ss_pred CCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 799898899999999737997898509978997378988999999754
Q 537021.9.peg.8 50 LIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKL 97 (148)
Q Consensus 50 g~~~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a 97 (148)
..|+-..+. ++.|+++|||+.++.+||.+||+++.| |+..|..|.-
T Consensus 7 ~iPGIg~~~-~~~Ll~~f~Si~~l~~As~~eL~~v~G-~~~~A~~i~~ 52 (62)
T d2a1ja1 7 KMPGVNAKN-CRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYD 52 (62)
T ss_dssp TSTTCCHHH-HHHHHHHCSSHHHHHTCCHHHHHHHHS-CHHHHHHHHH
T ss_pred CCCCCCHHH-HHHHHHHHCCHHHHHHCCHHHHHHCCC-CHHHHHHHHH
T ss_conf 699999999-999999852499998699999977859-5899999999
No 7
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=96.89 E-value=0.00096 Score=42.06 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=36.0
Q ss_pred HHHHHHHHH-CCCHHHHHCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999999973-7997898509978997378988999999754
Q 537021.9.peg.8 58 SIAKALLKR-FATLGGVFGAPLHLLQEINRIGKRVALELKL 97 (148)
Q Consensus 58 ~lA~~lL~~-fGsL~~ll~as~~eL~~i~GIG~aka~~l~a 97 (148)
..|+.|.+. |+|+..|.+|++++|.+|+|||+.+|.+|..
T Consensus 10 ~~a~~L~~~G~~tv~~l~~a~~eeL~~i~Gi~~~~A~~i~~ 50 (60)
T d2i1qa1 10 STAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIM 50 (60)
T ss_dssp HHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHH
T ss_conf 99999998369999999859999998778989999999999
No 8
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=96.38 E-value=0.002 Score=40.02 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=35.5
Q ss_pred HHHHHHHH-HCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99999997-37997898509978997378988999999754
Q 537021.9.peg.8 58 SIAKALLK-RFATLGGVFGAPLHLLQEINRIGKRVALELKL 97 (148)
Q Consensus 58 ~lA~~lL~-~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a 97 (148)
..|+.|++ .|+|+..|.+|++++|.+|+|||+.+|..|..
T Consensus 12 ~~a~~L~~~g~~sv~~l~~a~~~eL~~i~Gi~~~~A~~i~~ 52 (61)
T d1pzna1 12 ATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQ 52 (61)
T ss_dssp HHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHH
T ss_conf 99999999449999999859999997779999999999999
No 9
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]}
Probab=96.02 E-value=0.008 Score=36.10 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=40.9
Q ss_pred HHCCHHHHHHHHHHCCCCC---CCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 2189899999997337998---988999999997379978985099789973789889999997549
Q 537021.9.peg.8 35 NALAYYEILELILFRLIPR---KDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLV 98 (148)
Q Consensus 35 ~~LsD~ELLallL~~g~~~---~~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~ 98 (148)
...++.||.+++=+.|..+ ...+.+|+.++++||| ....+.++|+++||||+..|..+++.
T Consensus 69 a~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g---~~p~~~~~L~~LpGVG~kTA~~il~~ 132 (217)
T d1keaa_ 69 LKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGG---RVPRNRKAILDLPGVGKYTCAAVMCL 132 (217)
T ss_dssp HHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTT---SCCSCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98638999999999986467888999999998861268---75302588998876424666788987
No 10
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]}
Probab=95.83 E-value=0.0044 Score=37.79 Aligned_cols=65 Identities=20% Similarity=0.329 Sum_probs=56.9
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHH-CCCCC--HHHHHHHHHHHHHHH
Q ss_conf 899999997337998988999999997379978985099789973-78988--999999754999999
Q 537021.9.peg.8 39 YYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE-INRIG--KRVALELKLVSVASQ 103 (148)
Q Consensus 39 D~ELLallL~~g~~~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~-i~GIG--~aka~~l~a~~El~r 103 (148)
-.-|++.+|..-|+...|.....+|+++|++...+.+|+.+++.+ |+|+| ..||..|+.+.+...
T Consensus 34 ~~vLv~~iLsqqT~~~~v~~~~~~l~~~~pt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~ 101 (217)
T d1keaa_ 34 YVILITEILLRRTTAGHVKKIYDKFFVKYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVI 101 (217)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHCCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999980196899999999998723409999986389999999999864678889999999988
No 11
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]}
Probab=95.25 E-value=0.014 Score=34.52 Aligned_cols=61 Identities=8% Similarity=-0.007 Sum_probs=45.9
Q ss_pred HHCCHHHHHHHHHHCCCCCC--CHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 21898999999973379989--88999999997379978985099789973789889999997549
Q 537021.9.peg.8 35 NALAYYEILELILFRLIPRK--DTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLV 98 (148)
Q Consensus 35 ~~LsD~ELLallL~~g~~~~--~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~ 98 (148)
...+..||.+++-+.|..++ ..+..|..++.+|+| -+-.+.++|.+++|||+..|..+++.
T Consensus 64 a~a~~~~l~~~i~~~G~~~ra~~l~~~~~~~~~~~~G---~vp~~~~~Ll~LpGIG~kTA~~il~~ 126 (221)
T d1rrqa1 64 ADADEDEVLKAWEGLGYYSRVRNLHAAVKEVKTRYGG---KVPDDPDEFSRLKGVGPYTVGAVLSL 126 (221)
T ss_dssp HHSCHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHHTT---CCCCSHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7215899986620301222357899888777664079---88618999998887504788899999
No 12
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]}
Probab=95.23 E-value=0.015 Score=34.41 Aligned_cols=94 Identities=14% Similarity=0.058 Sum_probs=64.5
Q ss_pred HHHCCHHHHHHHHHHCCCC---CCCHHHHHHHHHHHCCCHHHHH-CCCHHHHHHCCCCCHHHHHHHHHHHHHH-------
Q ss_conf 2218989999999733799---8988999999997379978985-0997899737898899999975499999-------
Q 537021.9.peg.8 34 ENALAYYEILELILFRLIP---RKDTKSIAKALLKRFATLGGVF-GAPLHLLQEINRIGKRVALELKLVSVAS------- 102 (148)
Q Consensus 34 ~~~LsD~ELLallL~~g~~---~~~~~~lA~~lL~~fGsL~~ll-~as~~eL~~i~GIG~aka~~l~a~~El~------- 102 (148)
...+++.||.+++=..|.. -...+.+|+.+.+.|+++.++- ....++|++++|||+..|..+... .++
T Consensus 71 la~a~~eel~~~ir~~G~~~~KA~~i~~~a~~i~~~~~~~~~~~~~~~~~~L~~lpGIG~kTA~~vl~~-~~~~~~~~vD 149 (217)
T d1pu6a_ 71 IAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCY-ACAKEVMVVD 149 (217)
T ss_dssp HHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHH-TTCCSCCCCC
T ss_pred HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HCCCEEEECC
T ss_conf 977899999999998799389999999999999974310015996789999998763656999999999-7288054057
Q ss_pred ---HHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf ---99999876406778898999999999845
Q 537021.9.peg.8 103 ---QRILKANWSIKKFLTPGQPCLISVERHYP 131 (148)
Q Consensus 103 ---rR~~~~~~~~~~~l~s~~~v~~yl~~~l~ 131 (148)
+|+... + .-.-.+++++..++...+.
T Consensus 150 ~hv~Rv~~R-l--g~~~~~~~~~~~~~~~~l~ 178 (217)
T d1pu6a_ 150 KYSYLFLKK-L--GIEIEDYDELQHFFEKGVQ 178 (217)
T ss_dssp HHHHHHHHH-T--TCCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-H--CCCCCCHHHHHHHHHHHHH
T ss_conf 489999999-5--8888999999999999808
No 13
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]}
Probab=95.06 E-value=0.022 Score=33.28 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=39.2
Q ss_pred HCCHHHHHHHHHHCCCCCC--CHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 1898999999973379989--8899999999737997898509978997378988999999754
Q 537021.9.peg.8 36 ALAYYEILELILFRLIPRK--DTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKL 97 (148)
Q Consensus 36 ~LsD~ELLallL~~g~~~~--~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a 97 (148)
..+..||.+++=..|..++ +.+..|+.++..|+| -+-.+.++|.+++|||+..|..+++
T Consensus 67 ~a~~~~l~~~i~~~g~~~ka~~l~~~~~~i~~~~~g---~vp~~~~~L~~LpGVG~kTA~~il~ 127 (224)
T d1kg2a_ 67 NAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGG---KFPETFEEVAALPGVGRSTAGAILS 127 (224)
T ss_dssp HSCHHHHHHHHTTSCCTHHHHHHHHHHHHHHHHSTT---SCCCSHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 741898876753136887778998755664331158---7403799999998201445689998
No 14
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=95.00 E-value=0.025 Score=32.95 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=52.1
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHH-CCCCC--HHHHHHHHHHHH
Q ss_conf 99999997337998988999999997379978985099789973-78988--999999754999
Q 537021.9.peg.8 40 YEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE-INRIG--KRVALELKLVSV 100 (148)
Q Consensus 40 ~ELLallL~~g~~~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~-i~GIG--~aka~~l~a~~E 100 (148)
.-|++.+|..-+....|....++|.++|.+...+.+++.++|.+ |+++| ..||..|+.+.+
T Consensus 22 ~~LV~~ILsqqT~~~~v~~v~~~L~~~~pt~e~la~a~~~el~~~Ir~~G~~~~KAk~I~~~a~ 85 (144)
T d1ngna_ 22 KLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKPLGLYDLRAKTIIKFSD 85 (144)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHSCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999986097999999999999867710211026889999998754248789999999985
No 15
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=94.75 E-value=0.017 Score=34.01 Aligned_cols=94 Identities=13% Similarity=0.131 Sum_probs=59.4
Q ss_pred HHCCHHHHHHHHHHCCCCC---CCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHH---------HH
Q ss_conf 2189899999997337998---98899999999737997898509978997378988999999754999---------99
Q 537021.9.peg.8 35 NALAYYEILELILFRLIPR---KDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSV---------AS 102 (148)
Q Consensus 35 ~~LsD~ELLallL~~g~~~---~~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~~E---------l~ 102 (148)
...+..|+++++-+.|..+ .+.+..|+.+.++||| -.-.+.++|.++||||+..|..+.+..- =.
T Consensus 66 a~~~~~e~~~~i~~~g~y~~ka~~l~~~a~~i~~~~~g---~vp~~~~~L~~LpGVG~kTA~~il~~a~~~~~~~VDtnv 142 (214)
T d1orna_ 66 IAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNG---EVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHV 142 (214)
T ss_dssp HSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHSTT---SCCSCHHHHTTSTTCCHHHHHHHHHHHHCCCCCCCCHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHH
T ss_conf 20557776533210324108889999985547998399---788889999718686632677899987058755555238
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
Q ss_conf 999998764067788989999999998459
Q 537021.9.peg.8 103 QRILKANWSIKKFLTPGQPCLISVERHYPM 132 (148)
Q Consensus 103 rR~~~~~~~~~~~l~s~~~v~~yl~~~l~~ 132 (148)
+|+.. ++.--..-+++..+...++..+..
T Consensus 143 ~RV~~-Rlg~~~~~~~~~~~~~~l~~~~p~ 171 (214)
T d1orna_ 143 ERVSK-RLGFCRWDDSVLEVEKTLMKIIPK 171 (214)
T ss_dssp HHHHH-HHTSSCTTCCHHHHHHHHHHHSCG
T ss_pred HHHHH-HHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 88999-988740355104445556530765
No 16
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=94.23 E-value=0.018 Score=33.83 Aligned_cols=105 Identities=10% Similarity=0.013 Sum_probs=63.5
Q ss_pred HHHHHHHHHHC--CHHHCCH---HHHHHHHHHCCCCCC---CHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHH
Q ss_conf 50199999823--9221898---999999973379989---889999999973799789850997899737898899999
Q 537021.9.peg.8 22 HNRLRDRFLQK--GENALAY---YEILELILFRLIPRK---DTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVAL 93 (148)
Q Consensus 22 r~R~RErll~~--G~~~LsD---~ELLallL~~g~~~~---~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~ 93 (148)
-.+--++|.+. .+++++. .|+.+++-+.|..+. ..+.+|+.+.++||| .+--+.++|.++||||+..|.
T Consensus 47 v~~~~~~l~~~~~t~~~la~a~~~~l~~~i~~~G~y~~Ka~~l~~~a~~i~~~~~g---~~p~~~~~L~~LpGVG~~TA~ 123 (211)
T d2abka_ 47 VNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG---EVPEDRAALEALPGVGRKTAN 123 (211)
T ss_dssp HHHHHHHHTTTCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTTT---SCCSCHHHHHHSTTCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHCHHHHH
T ss_conf 99999988874147278876557676777777544115788999998889987148---604779999999860517899
Q ss_pred HHHHHHH---------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 9754999---------9999999876406778898999999999845
Q 537021.9.peg.8 94 ELKLVSV---------ASQRILKANWSIKKFLTPGQPCLISVERHYP 131 (148)
Q Consensus 94 ~l~a~~E---------l~rR~~~~~~~~~~~l~s~~~v~~yl~~~l~ 131 (148)
-|.+..- =.+|+..- +.- ..-.++.++...+...+.
T Consensus 124 ~Il~~a~~~p~~~vD~nv~Rv~~R-~g~-~~~~~~~~~~~~~~~~~p 168 (211)
T d2abka_ 124 VVLNTAFGWPTIAVDTHIFRVCNR-TQF-APGKNVEQVEEKLLKVVP 168 (211)
T ss_dssp HHHHHHHCCCCCCCCHHHHHHHHH-HCS-SCCSSHHHHHHHHHHHSC
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHH-HCC-CCCCHHHHHHHHHHHCCC
T ss_conf 999998568032256799999997-066-754204678888860486
No 17
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]}
Probab=94.18 E-value=0.047 Score=31.14 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=50.0
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHH-CCCCC-HHHHHHHHH
Q ss_conf 899999997337998988999999997379978985099789973-78988-999999754
Q 537021.9.peg.8 39 YYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE-INRIG-KRVALELKL 97 (148)
Q Consensus 39 D~ELLallL~~g~~~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~-i~GIG-~aka~~l~a 97 (148)
-.-|++.+|..-++...|.....+|+++|.++..+..|+.+++.+ |.|+| ..++..|+.
T Consensus 31 ~~vlvs~iLsqqT~~~~v~~~~~~l~~~~pt~~~la~a~~~~l~~~i~~~g~~~ka~~l~~ 91 (224)
T d1kg2a_ 31 YKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHK 91 (224)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHCSSHHHHHHSCHHHHHHHHTTSCCTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999998309099999999999998343999987418988767531368877789987
No 18
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]}
Probab=93.96 E-value=0.056 Score=30.62 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=49.6
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHH-CCCCC-HHHHHHHHHH
Q ss_conf 99999997337998988999999997379978985099789973-78988-9999997549
Q 537021.9.peg.8 40 YEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE-INRIG-KRVALELKLV 98 (148)
Q Consensus 40 ~ELLallL~~g~~~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~-i~GIG-~aka~~l~a~ 98 (148)
.-|++.+|..-|+..+|....++|+++|.+...+..++.+++.+ |.|+| ..++..+...
T Consensus 30 ~vLV~~iLsqqT~~~~v~~~~~~L~~~~~t~~~la~a~~~~l~~~i~~~G~~~ra~~l~~~ 90 (221)
T d1rrqa1 30 KVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYYSRVRNLHAA 90 (221)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHSCSHHHHHHSCHHHHHHHHTTSSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999980292999999999888853628888721589998662030122235789988
No 19
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.57 E-value=0.062 Score=30.35 Aligned_cols=51 Identities=20% Similarity=0.111 Sum_probs=37.2
Q ss_pred HHCCCCCCCHHHHHHHHHHHCCCH---HHHHCCCH----HHHHHCCCCCHHHHHHHHH
Q ss_conf 733799898899999999737997---89850997----8997378988999999754
Q 537021.9.peg.8 47 LFRLIPRKDTKSIAKALLKRFATL---GGVFGAPL----HLLQEINRIGKRVALELKL 97 (148)
Q Consensus 47 L~~g~~~~~~~~lA~~lL~~fGsL---~~ll~as~----~eL~~i~GIG~aka~~l~a 97 (148)
.+.+.+.+....+|+.+.+.+++. ..+.+.+. ++|++++|||+..|..+.+
T Consensus 64 ~~~~~ra~~i~~~a~~i~~~~~~~~~l~~l~~~~~~~~~~~L~~l~GIG~wTA~~il~ 121 (190)
T d2noha1 64 LGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTQVADCICL 121 (190)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSCSHHHHHHTTTSCHHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 6348999999999999987301236889863799479999998767751899999999
No 20
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=93.51 E-value=0.055 Score=30.68 Aligned_cols=40 Identities=30% Similarity=0.123 Sum_probs=33.8
Q ss_pred HHHHHHH-HCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999997-379978985099789973789889999997549
Q 537021.9.peg.8 59 IAKALLK-RFATLGGVFGAPLHLLQEINRIGKRVALELKLV 98 (148)
Q Consensus 59 lA~~lL~-~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~ 98 (148)
.++.|-+ .|.++..+..+++++|..|+|||+.+|..|...
T Consensus 15 ~~~kL~~aG~~Tve~ia~~t~~~L~~i~Gi~e~~a~KIi~~ 55 (64)
T d1szpa1 15 DVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNE 55 (64)
T ss_dssp HHHHHHTTSCCSHHHHHHSCSHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99999996997499998689999977679789999999999
No 21
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=92.64 E-value=0.14 Score=28.05 Aligned_cols=64 Identities=17% Similarity=0.311 Sum_probs=52.4
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHH-CCCCC--HHHHHHHHHHHHHH
Q ss_conf 899999997337998988999999997379978985099789973-78988--99999975499999
Q 537021.9.peg.8 39 YYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE-INRIG--KRVALELKLVSVAS 102 (148)
Q Consensus 39 D~ELLallL~~g~~~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~-i~GIG--~aka~~l~a~~El~ 102 (148)
=.-|++.+|..-|+...|....++++++|.+...+..++.+++.. +.|+| ..||..|+.+.+..
T Consensus 31 ~~vLVs~iLsqqT~~~~v~~~~~~l~~~~pt~~~la~~~~~e~~~~i~~~g~y~~ka~~l~~~a~~i 97 (214)
T d1orna_ 31 FELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAML 97 (214)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHCCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999998519199998887522103575465520557776533210324108889999985547
No 22
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=92.29 E-value=0.052 Score=30.84 Aligned_cols=64 Identities=11% Similarity=0.070 Sum_probs=54.3
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHH-CCCCCH--HHHHHHHHHHHHH
Q ss_conf 899999997337998988999999997379978985099789973-789889--9999975499999
Q 537021.9.peg.8 39 YYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE-INRIGK--RVALELKLVSVAS 102 (148)
Q Consensus 39 D~ELLallL~~g~~~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~-i~GIG~--aka~~l~a~~El~ 102 (148)
-.-|++.+|..-++..+|....++|.++|++...+..|+.+++.+ |+|+|- .||..|+.+.+..
T Consensus 30 ~~vli~~iLsqqT~~~~v~~~~~~l~~~~~t~~~la~a~~~~l~~~i~~~G~y~~Ka~~l~~~a~~i 96 (211)
T d2abka_ 30 FELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRIL 96 (211)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999995626399999999988874147278876557676777777544115788999998889
No 23
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]}
Probab=91.15 E-value=0.16 Score=27.70 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=41.1
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCC---HHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999973379989889999999973799---789850997899737898899999975499999999
Q 537021.9.peg.8 40 YEILELILFRLIPRKDTKSIAKALLKRFAT---LGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRI 105 (148)
Q Consensus 40 ~ELLallL~~g~~~~~~~~lA~~lL~~fGs---L~~ll~as~~eL~~i~GIG~aka~~l~a~~El~rR~ 105 (148)
.++...++. .++--. -+|-.+|..|+. ...+.+-+...|++++|||+..|..|. .||.-++
T Consensus 5 r~~F~~Li~--V~GIGp-K~Al~iLs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi--~eLk~K~ 68 (78)
T d1cuka2 5 RTLFKELIK--TNGVGP-KLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLI--VEMKDRF 68 (78)
T ss_dssp HHHHHHHHH--SSSCCH-HHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHH--HHHHHHG
T ss_pred HHHHHHHHC--CCCCCH-HHHHHHHHHCCHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHH--HHHHHHH
T ss_conf 999999876--688019-999999984899999999980688871229997899999999--9999999
No 24
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=89.81 E-value=0.1 Score=28.90 Aligned_cols=39 Identities=28% Similarity=0.212 Sum_probs=33.0
Q ss_pred HHHHHH-HCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 999997-379978985099789973789889999997549
Q 537021.9.peg.8 60 AKALLK-RFATLGGVFGAPLHLLQEINRIGKRVALELKLV 98 (148)
Q Consensus 60 A~~lL~-~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~ 98 (148)
++.|-+ .|.++..++.+++++|.+|+|+++.+|..|...
T Consensus 23 i~kL~~aG~~Tv~~i~~at~~~L~~i~G~~e~~A~KIi~~ 62 (70)
T d1b22a_ 23 VKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAE 62 (70)
T ss_dssp HHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHCCHHHHHHCCCCCHHHHHHHHHH
T ss_conf 9999996863499998489999987679789999999999
No 25
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]}
Probab=89.66 E-value=0.23 Score=26.65 Aligned_cols=55 Identities=24% Similarity=0.403 Sum_probs=36.0
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCC---HHHHHCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999999973379989889999999973799---7898509978997378988999999754
Q 537021.9.peg.8 40 YEILELILFRLIPRKDTKSIAKALLKRFAT---LGGVFGAPLHLLQEINRIGKRVALELKL 97 (148)
Q Consensus 40 ~ELLallL~~g~~~~~~~~lA~~lL~~fGs---L~~ll~as~~eL~~i~GIG~aka~~l~a 97 (148)
.++...++. .++--. -+|-.+|+.++- ...+.+.+...|.+++|||+..|.+|..
T Consensus 6 r~lF~~Li~--V~GIGp-k~Al~iLs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi~ 63 (73)
T d1ixra1 6 LALFELLLS--VSGVGP-KVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIAL 63 (73)
T ss_dssp HHHHHHHHS--SSCCCH-HHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHC--CCCCCH-HHHHHHHHHCCHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHH
T ss_conf 999999865--588079-9999999873688999999806899865299977999999999
No 26
>d1doqa_ a.60.3.1 (A:) C-terminal domain of RNA polymerase alpha subunit {Thermus thermophilus [TaxId: 274]}
Probab=89.49 E-value=0.36 Score=25.46 Aligned_cols=41 Identities=24% Similarity=0.224 Sum_probs=34.2
Q ss_pred HHHHHHHC--CCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999737--997898509978997378988999999754999
Q 537021.9.peg.8 60 AKALLKRF--ATLGGVFGAPLHLLQEINRIGKRVALELKLVSV 100 (148)
Q Consensus 60 A~~lL~~f--GsL~~ll~as~~eL~~i~GIG~aka~~l~a~~E 100 (148)
|.+.|.+. .+++.|...+.++|.+++|+|+.....|+-+.+
T Consensus 19 ~~N~L~~~gI~tv~dL~~~s~~dLl~i~n~G~ksl~EI~~~L~ 61 (69)
T d1doqa_ 19 VLHSLKEEGIESVRALLALNLKDLKNIPGIGERSLEEIKEALE 61 (69)
T ss_dssp HHHHHHHTTCCSHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 9999989599539999878899997488987878999999999
No 27
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]}
Probab=88.88 E-value=0.26 Score=26.33 Aligned_cols=54 Identities=17% Similarity=0.192 Sum_probs=35.8
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCC---HHHHHCCCHHHHHHCCCCCHHHHHHHH
Q ss_conf 999999973379989889999999973799---789850997899737898899999975
Q 537021.9.peg.8 40 YEILELILFRLIPRKDTKSIAKALLKRFAT---LGGVFGAPLHLLQEINRIGKRVALELK 96 (148)
Q Consensus 40 ~ELLallL~~g~~~~~~~~lA~~lL~~fGs---L~~ll~as~~eL~~i~GIG~aka~~l~ 96 (148)
.++...++. .++--. -.|-.+|..|+. ...+.+-+...|.++||||+..|-.|.
T Consensus 5 r~~F~~Li~--V~GIGp-K~Al~iLs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi 61 (71)
T d1bvsa2 5 RDLFLALLS--VSGVGP-RLAMATLAVHDAAALRQALADSDVASLTRVPGIGRRGAERIV 61 (71)
T ss_dssp HHHHHHHHT--SSSCCH-HHHHHHHHHSCHHHHHHHTTTTCHHHHHTSTTCCHHHHHHHH
T ss_pred HHHHHHHHC--CCCCCH-HHHHHHHHHCCHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHH
T ss_conf 999999855--488179-999999984999999999981798884319997799999999
No 28
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=86.55 E-value=0.39 Score=25.22 Aligned_cols=30 Identities=20% Similarity=0.117 Sum_probs=24.4
Q ss_pred HHHHCCCHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 898509978997378988999999754999
Q 537021.9.peg.8 71 GGVFGAPLHLLQEINRIGKRVALELKLVSV 100 (148)
Q Consensus 71 ~~ll~as~~eL~~i~GIG~aka~~l~a~~E 100 (148)
-++-.|+.++|+.++|||+.+|..|..-.+
T Consensus 27 idiN~As~~~L~~lpGig~~~A~~Iv~~R~ 56 (90)
T d3bzka1 27 VDVNTASAALLARISGLNSTLAQNIVAHRD 56 (90)
T ss_dssp EETTTCCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred EEHHHCCHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 514139899996778989999999999999
No 29
>d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=86.30 E-value=0.04 Score=31.57 Aligned_cols=36 Identities=6% Similarity=-0.022 Sum_probs=28.9
Q ss_pred HHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHH
Q ss_conf 999973799789850997899737898899999975
Q 537021.9.peg.8 61 KALLKRFATLGGVFGAPLHLLQEINRIGKRVALELK 96 (148)
Q Consensus 61 ~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~ 96 (148)
.++-..+|.--.+-.|+.++|+.++||||++|..|.
T Consensus 9 ~~~~~~~g~kidlN~As~~eL~~lpGIg~~~A~~Iv 44 (98)
T d2axtu1 9 EKLGTAYGEKIDLNNTNIAAFIQYRGLYPTLAKLIV 44 (98)
T ss_dssp HHTTSSBTTBEESSSSCGGGGTTSTTCTHHHHHHHH
T ss_pred HHHHHHCCCCEECCCCCHHHHHHHHHHCHHHHHHHH
T ss_conf 777642288563634169999873212699999999
No 30
>d1u9la_ a.60.4.2 (A:) Transcription elongation protein NusA {Escherichia coli [TaxId: 562]}
Probab=85.93 E-value=0.72 Score=23.49 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=34.4
Q ss_pred HHHHHHHH-HCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99999997-37997898509978997378988999999754
Q 537021.9.peg.8 58 SIAKALLK-RFATLGGVFGAPLHLLQEINRIGKRVALELKL 97 (148)
Q Consensus 58 ~lA~~lL~-~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a 97 (148)
.+|+-|.. .|.|+..+..+|.++|..|.|+-.-.+..|+.
T Consensus 17 ~lA~lLv~EGF~siEeIAyv~~~eL~~IegfDee~a~eL~~ 57 (68)
T d1u9la_ 17 DFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRE 57 (68)
T ss_dssp HHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999998465869998659999997700547999999999
No 31
>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]}
Probab=84.92 E-value=0.94 Score=22.73 Aligned_cols=47 Identities=9% Similarity=0.089 Sum_probs=32.7
Q ss_pred HHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 78985099789973789889999997549999999999876406778
Q 537021.9.peg.8 70 LGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFL 116 (148)
Q Consensus 70 L~~ll~as~~eL~~i~GIG~aka~~l~a~~El~rR~~~~~~~~~~~l 116 (148)
+....=.+.++|.+|+|+|+.|+...--..+....+..+........
T Consensus 46 ia~~~P~t~~eL~~I~G~g~~k~~kyG~~l~~I~~~~~e~~~~~~~~ 92 (94)
T d2e1fa1 46 MAKMRPTTVENVKRIDGVSEGKAAMLAPLLEVIKHFCQTNSVQTDLF 92 (94)
T ss_dssp HHHHCCCSHHHHTTSTTCCHHHHHHTHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99729999999837989899999999899999999999849964545
No 32
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=83.67 E-value=0.68 Score=23.62 Aligned_cols=28 Identities=18% Similarity=0.081 Sum_probs=13.4
Q ss_pred HHHCCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9850997899737898899999975499
Q 537021.9.peg.8 72 GVFGAPLHLLQEINRIGKRVALELKLVS 99 (148)
Q Consensus 72 ~ll~as~~eL~~i~GIG~aka~~l~a~~ 99 (148)
.|-.||.++|.+++|||+..|..|..-.
T Consensus 26 ~iNtAs~~eL~~lpgig~~~A~~II~yR 53 (91)
T d2edua1 26 LLNEGSARDLRSLQRIGPKKAQLIVGWR 53 (91)
T ss_dssp HHHHSCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 1556999999647898999999999999
No 33
>d1lb2b_ a.60.3.1 (B:) C-terminal domain of RNA polymerase alpha subunit {Escherichia coli [TaxId: 562]}
Probab=83.38 E-value=1.3 Score=21.81 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=32.6
Q ss_pred HHHHHHH--CCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9999973--799789850997899737898899999975499
Q 537021.9.peg.8 60 AKALLKR--FATLGGVFGAPLHLLQEINRIGKRVALELKLVS 99 (148)
Q Consensus 60 A~~lL~~--fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~~ 99 (148)
|.+.|.+ ...++.|...+.+||.+++|+|......|+-..
T Consensus 17 ~~N~L~~~gI~tvgdL~~~s~~dLl~~~n~G~KSl~EI~~~L 58 (72)
T d1lb2b_ 17 SANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVL 58 (72)
T ss_dssp HHHHHHHTTCCBHHHHHTCCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 998874828947999986789999768897586899999999
No 34
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=82.06 E-value=0.19 Score=27.25 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=30.1
Q ss_pred CHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 97899737898899999975499999999998764067788989999
Q 537021.9.peg.8 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCL 123 (148)
Q Consensus 77 s~~eL~~i~GIG~aka~~l~a~~El~rR~~~~~~~~~~~l~s~~~v~ 123 (148)
+...|.+|.||||++|..+. +.|-|....-......++..+.+-
T Consensus 5 ~l~~l~~I~GvGp~~A~~l~---~~Gi~ti~dLr~~~~~Lt~~Q~iG 48 (57)
T d2fmpa2 5 SINFLTRVSGIGPSAARKFV---DEGIKTLEDLRKNEDKLNHHQRIG 48 (57)
T ss_dssp HHHHHTTSTTCCHHHHHHHH---HTTCCSHHHHHTCGGGSCHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHH---HHCCCCHHHHHHHHHHCCHHHHHH
T ss_conf 89988534431499999999---948998999976061278999998
No 35
>d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]}
Probab=81.18 E-value=0.53 Score=24.33 Aligned_cols=28 Identities=21% Similarity=0.143 Sum_probs=20.0
Q ss_pred HHHCCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9850997899737898899999975499
Q 537021.9.peg.8 72 GVFGAPLHLLQEINRIGKRVALELKLVS 99 (148)
Q Consensus 72 ~ll~as~~eL~~i~GIG~aka~~l~a~~ 99 (148)
++-.|+.++|++++|||+..|..|....
T Consensus 10 diNtA~~~eL~~lpgig~~~A~~Iv~~R 37 (65)
T d2duya1 10 SLNEASLEELMALPGIGPVLARRIVEGR 37 (65)
T ss_dssp ETTTCCHHHHTTSTTCCHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHCCCCCHHHHHHHHHCC
T ss_conf 0622889999777898999999999848
No 36
>d1z3eb1 a.60.3.1 (B:245-311) C-terminal domain of RNA polymerase alpha subunit {Bacillus subtilis [TaxId: 1423]}
Probab=80.17 E-value=1.9 Score=20.83 Aligned_cols=42 Identities=17% Similarity=0.171 Sum_probs=33.9
Q ss_pred HHHHHHHH--CCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999973--7997898509978997378988999999754999
Q 537021.9.peg.8 59 IAKALLKR--FATLGGVFGAPLHLLQEINRIGKRVALELKLVSV 100 (148)
Q Consensus 59 lA~~lL~~--fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~~E 100 (148)
-+.+.|.+ ...++.+...+.+||.+++++|......|+-...
T Consensus 17 R~~N~Lk~~~I~tv~dL~~~s~~dLl~~~nfG~kSl~EIk~~L~ 60 (67)
T d1z3eb1 17 RSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLE 60 (67)
T ss_dssp HHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999989399579999878899997578976604999999999
No 37
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=79.11 E-value=0.4 Score=25.13 Aligned_cols=48 Identities=15% Similarity=0.039 Sum_probs=34.2
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----CCHHHHHHHHH
Q ss_conf 9973789889999997549999999999876406778-----89899999999
Q 537021.9.peg.8 80 LLQEINRIGKRVALELKLVSVASQRILKANWSIKKFL-----TPGQPCLISVE 127 (148)
Q Consensus 80 eL~~i~GIG~aka~~l~a~~El~rR~~~~~~~~~~~l-----~s~~~v~~yl~ 127 (148)
.|..|+|||++.+..|..-+.-...+..+...+-..+ .-.+.+++||+
T Consensus 3 ~L~~I~gVG~~~a~~L~~~F~s~~~i~~As~eeL~~v~GIg~~~A~~I~~~l~ 55 (56)
T d1kfta_ 3 SLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 55 (56)
T ss_dssp GGGGCTTCSSSHHHHHHHHHSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 75358980099999999993999999986499998169979999999999876
No 38
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=72.92 E-value=0.84 Score=23.04 Aligned_cols=44 Identities=20% Similarity=0.080 Sum_probs=27.7
Q ss_pred CHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHH
Q ss_conf 97899737898899999975499999999998764067-788989999
Q 537021.9.peg.8 77 PLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKK-FLTPGQPCL 123 (148)
Q Consensus 77 s~~eL~~i~GIG~aka~~l~a~~El~rR~~~~~~~~~~-~l~s~~~v~ 123 (148)
+..+|++|.||||++|..+. +.|-|....-..+.. .++..+.+-
T Consensus 6 ~l~~f~~I~GvGp~~A~~l~---~~Gi~ti~dL~~~~~~~Lt~~Q~iG 50 (60)
T d1jmsa3 6 SFKLFTSVFGVGLKTAEKWF---RMGFRTLSKIQSDKSLRFTQMQKAG 50 (60)
T ss_dssp HHHHHHTSTTCCHHHHHHHH---HTTCCSHHHHHHCSSCCCCHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHH---HHCCCCHHHHHHCCCCCCCHHHHHH
T ss_conf 99998611632299999999---9389989999755765678999998
No 39
>d2odgc1 a.140.1.1 (C:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.36 E-value=1.7 Score=21.14 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=29.0
Q ss_pred HHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 221898999999973379989889999999973
Q 537021.9.peg.8 34 ENALAYYEILELILFRLIPRKDTKSIAKALLKR 66 (148)
Q Consensus 34 ~~~LsD~ELLallL~~g~~~~~~~~lA~~lL~~ 66 (148)
-..|||.||..++=.+|+|.-++.+.-+.+-++
T Consensus 3 y~~lSd~El~~lL~~y~I~HGPvVdstr~lyek 35 (46)
T d2odgc1 3 YADLSDTELTTLLRRYNIPHGPVVGSTRRLYEK 35 (46)
T ss_dssp GGGSCHHHHHHHHHHTTCCCCCCCHHHHHHHHH
T ss_pred HHHHCHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 656068999999999289988800613999999
No 40
>d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=68.70 E-value=3.6 Score=18.97 Aligned_cols=39 Identities=28% Similarity=0.335 Sum_probs=33.7
Q ss_pred HHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHH
Q ss_conf 9999999973799789850997899737898899999975
Q 537021.9.peg.8 57 KSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELK 96 (148)
Q Consensus 57 ~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~ 96 (148)
.+-|.+||+.||+.+.+-.|..++|.. .|+.++....++
T Consensus 14 reraerllkkyggyskvreagveelre-dgltdaqirelk 52 (55)
T d2csba4 14 RERAERLLKKYGGYSKVREAGVEELRE-DGLTDAQIRELK 52 (55)
T ss_dssp HHHHHHHHHHHTSHHHHHTSCHHHHHH-TTCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHH-CCCCHHHHHHHH
T ss_conf 899999999946826999962999988-566389999860
No 41
>d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase {Escherichia coli [TaxId: 562]}
Probab=66.45 E-value=3.9 Score=18.73 Aligned_cols=35 Identities=11% Similarity=0.057 Sum_probs=24.0
Q ss_pred HHHHCCCHHHHHHCCCCCHHHHHHH-HHHHHHHHHH
Q ss_conf 8985099789973789889999997-5499999999
Q 537021.9.peg.8 71 GGVFGAPLHLLQEINRIGKRVALEL-KLVSVASQRI 105 (148)
Q Consensus 71 ~~ll~as~~eL~~i~GIG~aka~~l-~a~~El~rR~ 105 (148)
....-.+.++|.+|+|||+.++... ..+.++.+.+
T Consensus 38 a~~~P~s~~~L~~I~G~g~~k~~~yG~~il~~i~~~ 73 (77)
T d1wuda1 38 AEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAH 73 (77)
T ss_dssp HHHCCCSHHHHHTSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 997889999983799989999999999999999998
No 42
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=66.28 E-value=1.8 Score=20.84 Aligned_cols=42 Identities=24% Similarity=0.156 Sum_probs=26.1
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 7899737898899999975499999999998764067788989999
Q 537021.9.peg.8 78 LHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQPCL 123 (148)
Q Consensus 78 ~~eL~~i~GIG~aka~~l~a~~El~rR~~~~~~~~~~~l~s~~~v~ 123 (148)
...|++|.||||++|..+.. .+-|... .++.+..++..+.+-
T Consensus 7 l~~ft~I~GvGp~~A~~l~~---~Gi~ti~-dLr~~~~Ln~~Q~iG 48 (57)
T d2bcqa2 7 LELFSNIWGAGTKTAQMWYQ---QGFRSLE-DIRSQASLTTQQAIG 48 (57)
T ss_dssp HHHHHTSTTCCHHHHHHHHH---TTCCSHH-HHHHHCCCCHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHH---HCCCCHH-HHHHCCCCCHHHHHH
T ss_conf 99986226223999999999---4898899-997567899999996
No 43
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8 kD)-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=64.04 E-value=3.2 Score=19.31 Aligned_cols=46 Identities=7% Similarity=0.187 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 89889999999973799789850997899737898899999975499999
Q 537021.9.peg.8 53 RKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVAS 102 (148)
Q Consensus 53 ~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~~El~ 102 (148)
+..+..-|-..|..+..- + .+.+++.++||||+.-+..|.-..+=|
T Consensus 26 r~~AY~~Aa~~i~~l~~~--i--~~~~~l~~i~GIGk~ia~kI~E~~~TG 71 (82)
T d2fmpa1 26 KYNAYRKAASVIAKYPHK--I--KSGAEAKKLPGVGTKIAEKIDEFLATG 71 (82)
T ss_dssp HHHHHHHHHHHHHHCSSC--C--CCHHHHHTSTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCC--C--CCHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 799999999999869965--5--789997649996589999999999969
No 44
>d2bcqa1 a.60.6.1 (A:252-327) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.94 E-value=3.7 Score=18.92 Aligned_cols=44 Identities=25% Similarity=0.172 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 889999999973799789850997899737898899999975499999
Q 537021.9.peg.8 55 DTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVAS 102 (148)
Q Consensus 55 ~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~~El~ 102 (148)
.+..-|-..|..+..- + .+.+++.++||||+.-+..|.-..+-|
T Consensus 26 ~AY~~A~~~l~~l~~~--i--~~~~~l~~lpGiG~~i~~kI~Eil~tG 69 (76)
T d2bcqa1 26 LGYAKAINALKSFHKP--V--TSYQEACSIPGIGKRMAEKIIEILESG 69 (76)
T ss_dssp HHHHHHHHHHHSCCSC--C--CCHHHHHTSTTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHCCCC--C--CCHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 9999999999868966--5--899998448873289999999999959
No 45
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]}
Probab=61.35 E-value=4.9 Score=18.08 Aligned_cols=31 Identities=16% Similarity=0.053 Sum_probs=15.5
Q ss_pred CHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 97898509978997378988999999754999
Q 537021.9.peg.8 69 TLGGVFGAPLHLLQEINRIGKRVALELKLVSV 100 (148)
Q Consensus 69 sL~~ll~as~~eL~~i~GIG~aka~~l~a~~E 100 (148)
+...+.++++++|..+ |+...|+..|..+.+
T Consensus 58 tp~~l~~~~~~~lr~~-Gls~~Ka~~i~~~a~ 88 (183)
T d1mpga1 58 TPQRLAAADPQALKAL-GMPLKRAEALIHLAN 88 (183)
T ss_dssp CHHHHHTCCHHHHHHT-TSCHHHHHHHHHHHH
T ss_pred CHHHHHCCCHHHHHHC-CCCHHHHHHHHHHHH
T ss_conf 6999984999899775-996778999999999
No 46
>d2csba1 a.60.2.4 (A:351-409) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=49.59 E-value=2.9 Score=19.59 Aligned_cols=29 Identities=17% Similarity=0.485 Sum_probs=24.2
Q ss_pred HHHHHHHHHHCCCHHHHHCCCHHHHHHCC
Q ss_conf 99999999737997898509978997378
Q 537021.9.peg.8 57 KSIAKALLKRFATLGGVFGAPLHLLQEIN 85 (148)
Q Consensus 57 ~~lA~~lL~~fGsL~~ll~as~~eL~~i~ 85 (148)
-+-|.+|+.+|.|+.+++..+.++..+.-
T Consensus 14 pdaadeliehfesiagilatdleeiermy 42 (59)
T d2csba1 14 PDAADELIEHFESIAGILATDLEEIERMY 42 (59)
T ss_dssp HHHHHHHHHHHSSHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 53489999999999999980299999999
No 47
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=48.86 E-value=4 Score=18.67 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=15.1
Q ss_pred CHHHHHCCCHHHHHHCCCCCHHHHHHHH
Q ss_conf 9789850997899737898899999975
Q 537021.9.peg.8 69 TLGGVFGAPLHLLQEINRIGKRVALELK 96 (148)
Q Consensus 69 sL~~ll~as~~eL~~i~GIG~aka~~l~ 96 (148)
.|.-|+..|+.. ..|+||||.+|..|.
T Consensus 8 dl~iL~G~DY~~-~gI~GIGpktAlkli 34 (120)
T d1b43a1 8 ELAILVGTDYNP-GGIKGIGLKKALEIV 34 (120)
T ss_dssp HHHHHHCCTTST-TCSTTCCHHHHHHHH
T ss_pred HHHHHHCCCCCC-CCCCCCCHHHHHHHH
T ss_conf 999995777886-568886779999999
No 48
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=47.03 E-value=4.2 Score=18.54 Aligned_cols=17 Identities=12% Similarity=0.137 Sum_probs=10.6
Q ss_pred HHHHHHHHCCCHHHHHC
Q ss_conf 99999973799789850
Q 537021.9.peg.8 59 IAKALLKRFATLGGVFG 75 (148)
Q Consensus 59 lA~~lL~~fGsL~~ll~ 75 (148)
.|-+++++|||+.+++.
T Consensus 28 tA~kli~~~gsle~i~~ 44 (105)
T d1rxwa1 28 KALNYIKTYGDIFRALK 44 (105)
T ss_dssp HHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHCCHHHHHH
T ss_conf 99999999399899999
No 49
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=46.59 E-value=4.3 Score=18.44 Aligned_cols=17 Identities=12% Similarity=-0.119 Sum_probs=9.1
Q ss_pred HHHHHHHHCCCHHHHHC
Q ss_conf 99999973799789850
Q 537021.9.peg.8 59 IAKALLKRFATLGGVFG 75 (148)
Q Consensus 59 lA~~lL~~fGsL~~ll~ 75 (148)
.|-+|+++||++.+++.
T Consensus 29 tA~klIk~~g~ie~l~~ 45 (108)
T d1a77a1 29 RAYELVRSGVAKDVLKK 45 (108)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHH
T ss_conf 99999998388999987
No 50
>d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=46.43 E-value=3.4 Score=19.10 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 889999999973799789850997899737898899999975499999
Q 537021.9.peg.8 55 DTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVAS 102 (148)
Q Consensus 55 ~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~~El~ 102 (148)
.+..-|-..|..+.. .+ .+.+++..++|||+.-+..|.-..+-|
T Consensus 42 ~AY~rAa~~i~~l~~--~i--~~~~~l~~i~GIGk~i~~kI~Eil~tG 85 (95)
T d1jmsa1 42 LAFMRASSVLKSLPF--PI--TSMKDTEGIPCLGDKVKSIIEGIIEDG 85 (95)
T ss_dssp HHHHHHHHHHHTCSS--CC--CSGGGGTTCSSCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCC--CC--CCHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 999999999986996--55--889999743434289999999999988
No 51
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=45.27 E-value=5.9 Score=17.57 Aligned_cols=18 Identities=39% Similarity=0.405 Sum_probs=15.0
Q ss_pred HHHHHHCCCCCHHHHHHH
Q ss_conf 789973789889999997
Q 537021.9.peg.8 78 LHLLQEINRIGKRVALEL 95 (148)
Q Consensus 78 ~~eL~~i~GIG~aka~~l 95 (148)
.-+|.+|+|||+.+|.+|
T Consensus 143 ll~L~~i~gvgr~rAr~L 160 (198)
T d2p6ra2 143 LLELVRIRHIGRVRARKL 160 (198)
T ss_dssp GHHHHTSTTCCHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHH
T ss_conf 886845789899999999
No 52
>d2gy9m1 a.156.1.1 (M:1-114) Ribosomal protein S13 {Escherichia coli [TaxId: 562]}
Probab=45.00 E-value=6.9 Score=17.13 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=18.8
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 899737898899999975499999
Q 537021.9.peg.8 79 HLLQEINRIGKRVALELKLVSVAS 102 (148)
Q Consensus 79 ~eL~~i~GIG~aka~~l~a~~El~ 102 (148)
-.|..|.|||+..|.+|.....+.
T Consensus 16 ~ALt~I~GIG~~~A~~Ic~~lgid 39 (114)
T d2gy9m1 16 IALTSIYGVGKTRSKAILAAAGIA 39 (114)
T ss_dssp HHHTTSSSCCHHHHHHHHHHHTCC
T ss_pred EEEEEEECCCHHHHHHHHHHCCCC
T ss_conf 872315684899999999981989
No 53
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus radiodurans [TaxId: 1299]}
Probab=41.99 E-value=8.2 Score=16.67 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=15.9
Q ss_pred HHHHHHCCCCCHHHHHHHHH
Q ss_conf 78997378988999999754
Q 537021.9.peg.8 78 LHLLQEINRIGKRVALELKL 97 (148)
Q Consensus 78 ~~eL~~i~GIG~aka~~l~a 97 (148)
.+.|.+.||||+..|-.+..
T Consensus 11 I~~l~kLPGIG~KsA~Rla~ 30 (199)
T d1vdda_ 11 IRELSRLPGIGPKSAQRLAF 30 (199)
T ss_dssp HHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHH
T ss_conf 99998789988999999999
No 54
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus thermophilus [TaxId: 274]}
Probab=39.12 E-value=8.3 Score=16.61 Aligned_cols=24 Identities=29% Similarity=0.076 Sum_probs=17.8
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 899737898899999975499999
Q 537021.9.peg.8 79 HLLQEINRIGKRVALELKLVSVAS 102 (148)
Q Consensus 79 ~eL~~i~GIG~aka~~l~a~~El~ 102 (148)
-.|..|.|||+..|.+|.....+.
T Consensus 16 ~ALt~I~GIG~~~A~~Ic~~lgId 39 (125)
T d2uubm1 16 VALTYIYGIGKARAKEALEKTGIN 39 (125)
T ss_dssp HHHTTSTTCCHHHHHHHHHTTTCC
T ss_pred EEEEEEECCCHHHHHHHHHHCCCC
T ss_conf 763205581899999999982998
No 55
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.61 E-value=8.5 Score=16.56 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=19.0
Q ss_pred CCCCCCHHHHHHHHHHHCCCHHHHHCCC
Q ss_conf 7998988999999997379978985099
Q 537021.9.peg.8 50 LIPRKDTKSIAKALLKRFATLGGVFGAP 77 (148)
Q Consensus 50 g~~~~~~~~lA~~lL~~fGsL~~ll~as 77 (148)
|.|+.-.+ .|.+||.+||++.+++..-
T Consensus 20 gv~gIG~k-tA~kli~~~~~le~i~~~~ 46 (140)
T d1ul1x1 20 SIRGIGPK-RAVDLIQKHKSIEEIVRRL 46 (140)
T ss_dssp CCTTCCHH-HHHHHHHHSSSHHHHHTTC
T ss_pred CCCCCCHH-HHHHHHHHHCCHHHHHHHH
T ss_conf 99982399-9999999939999999999
No 56
>d1xo1a1 a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]}
Probab=35.40 E-value=3.2 Score=19.33 Aligned_cols=26 Identities=8% Similarity=0.195 Sum_probs=17.1
Q ss_pred CCCCCCHHHHHHHHHHHCCCHHHHHCC
Q ss_conf 799898899999999737997898509
Q 537021.9.peg.8 50 LIPRKDTKSIAKALLKRFATLGGVFGA 76 (148)
Q Consensus 50 g~~~~~~~~lA~~lL~~fGsL~~ll~a 76 (148)
|.|+---+. |..|+++|||+.+++..
T Consensus 23 GV~GiG~Kt-A~kli~~~gsle~i~~~ 48 (105)
T d1xo1a1 23 GVEGIGAKR-GYNIIREFGNVLDIIDQ 48 (105)
T ss_dssp CCTTCCHHH-HHHHHHHHCSHHHHHHH
T ss_pred CCCCCCHHH-HHHHHHHCCHHHHHHHH
T ss_conf 758847899-99999870265899986
No 57
>d1v4aa1 a.24.16.4 (A:287-437) Glutamine synthase adenylyltransferase GlnE, domain 2 {Escherichia coli [TaxId: 562]}
Probab=25.86 E-value=14 Score=15.08 Aligned_cols=92 Identities=11% Similarity=0.123 Sum_probs=49.4
Q ss_pred HHCCHHHCCHHHHHHHHH--HCCCC-----CCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 823922189899999997--33799-----89889999999973799789850997899737898899999975499999
Q 537021.9.peg.8 30 LQKGENALAYYEILELIL--FRLIP-----RKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVAS 102 (148)
Q Consensus 30 l~~G~~~LsD~ELLallL--~~g~~-----~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~~El~ 102 (148)
++.|+++|-|-|.++=.+ ..|.. ..++... ...|..-.-+.+.-+..|..+.-+-
T Consensus 30 lK~~~GGL~DIEfi~Q~lqL~~~~~~p~~~~~~~~~~------------------l~~l~~~g~l~~~~~~~L~~ay~~l 91 (151)
T d1v4aa1 30 IKLGAGGIREIEFIVQVFQLIRGGREPSLQSRSLLPT------------------LSAIAELHLLSENDAEQLRVAYLFL 91 (151)
T ss_dssp TTTSTTSHHHHHHHHHHHHHHHTTTCGGGCCSSHHHH------------------HHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCHHHH------------------HHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 5779985102999999999970347810147668999------------------9999985999789999999999999
Q ss_pred HHH----HHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 999----9987640677889899999999984597800025
Q 537021.9.peg.8 103 QRI----LKANWSIKKFLTPGQPCLISVERHYPMKNANNFA 139 (148)
Q Consensus 103 rR~----~~~~~~~~~~l~s~~~v~~yl~~~l~~~~~E~F~ 139 (148)
+++ ..........+..++.....+...++..+-|.|.
T Consensus 92 r~l~~~Lrl~~~~~~~~lp~~~~~~~~La~~~g~~d~~~l~ 132 (151)
T d1v4aa1 92 RRLENLLQSINDEQTQTLPSDELNRARLAWAMDFADWPQLT 132 (151)
T ss_dssp HHHHHHHHHHHTCCCCBCCCSHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHH
T ss_conf 99999999970664467998889999999983999999999
No 58
>d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]}
Probab=25.63 E-value=7.8 Score=16.80 Aligned_cols=51 Identities=8% Similarity=-0.091 Sum_probs=40.5
Q ss_pred HHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 789850997899737898899999975499999999998764067788989
Q 537021.9.peg.8 70 LGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKKFLTPGQ 120 (148)
Q Consensus 70 L~~ll~as~~eL~~i~GIG~aka~~l~a~~El~rR~~~~~~~~~~~l~s~~ 120 (148)
+..+...+.++..+++||.+..|-.|.+...+...++..--.+...+++..
T Consensus 111 ~~~l~~~~~~~~~~~~gl~~~Rad~i~~g~~il~~il~~~~~~~i~vs~~g 161 (177)
T d1u6za3 111 VKEVLRHRNFASLSLPGLSEERKTVFVPGLAILCGVFDALAIRELRLSDGA 161 (177)
T ss_dssp HHHHTTCSBGGGCCCTTCCTTGGGTHHHHHHHHHHHHHHHTCSCBEECSCC
T ss_pred HHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCH
T ss_conf 999871783877875066700366589999999999998199989999862
No 59
>d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=23.70 E-value=9.1 Score=16.37 Aligned_cols=74 Identities=8% Similarity=0.007 Sum_probs=47.6
Q ss_pred HHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHH-HHHHHHHHHHCCC
Q ss_conf 99999973799789850997899737898899999975499999999998764067-788989-9999999984597
Q 537021.9.peg.8 59 IAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKK-FLTPGQ-PCLISVERHYPMK 133 (148)
Q Consensus 59 lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~~El~rR~~~~~~~~~~-~l~s~~-~v~~yl~~~l~~~ 133 (148)
-.+..++ |=+-++=++...+.|.-.||||+.++-+|.-..+-..=-..+.+.++. -+.+|. -+.+=...++.+.
T Consensus 96 ne~~FV~-FfN~A~pit~klH~leLLPGIGkk~~~~iveeR~~~~f~sf~dl~~rv~~~~~p~~lla~Ri~~Ei~d~ 171 (180)
T d2i5ha1 96 DEKKYVD-FFNKADSITTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQRVKGIQRPEKLIVSRIIYEIKNP 171 (180)
T ss_dssp THHHHHH-HHC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHHSTTCCCHHHHHHHHHHHHHHCT
T ss_pred CHHHHEE-EEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9132100-324587440346888743452689999999997448988999999885477789999999999996298
No 60
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=23.62 E-value=20 Score=14.15 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=27.1
Q ss_pred HHHHHHHHHHCCCHHHHHC----CCHHHHHHCCCCCHHHHH
Q ss_conf 9999999973799789850----997899737898899999
Q 537021.9.peg.8 57 KSIAKALLKRFATLGGVFG----APLHLLQEINRIGKRVAL 93 (148)
Q Consensus 57 ~~lA~~lL~~fGsL~~ll~----as~~eL~~i~GIG~aka~ 93 (148)
...|.++|..||+-..+-. -.++.|..++|+|+....
T Consensus 12 rktaerllrafgnpervkqlarefeieklasvegvgervlr 52 (55)
T d2csba3 12 RKTAERLLRAFGNPERVKQLAREFEIEKLASVEGVGERVLR 52 (55)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHHTTCHHHHHTSTTCSHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 76899999981998999999999879999732023899998
No 61
>d5csma_ a.130.1.2 (A:) Allosteric chorismate mutase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.23 E-value=15 Score=14.99 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHH
Q ss_conf 988999999754999999999987640677-8898999
Q 537021.9.peg.8 86 RIGKRVALELKLVSVASQRILKANWSIKKF-LTPGQPC 122 (148)
Q Consensus 86 GIG~aka~~l~a~~El~rR~~~~~~~~~~~-l~s~~~v 122 (148)
.-|.+..+-+.|...|+||++..+..-... .++|+.-
T Consensus 139 NyGS~a~cDi~cLQALSRRIHyGKFVAEaKF~~~p~~y 176 (256)
T d5csma_ 139 NFGSVATRDIECLQSLSRRIHFGKFVAEAKFQSDIPLY 176 (256)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_conf 33189999999999999886654577587764198999
No 62
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]}
Probab=22.88 E-value=8.7 Score=16.50 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=13.7
Q ss_pred HHHHHCCCCCHHHHHHHH
Q ss_conf 899737898899999975
Q 537021.9.peg.8 79 HLLQEINRIGKRVALELK 96 (148)
Q Consensus 79 ~eL~~i~GIG~aka~~l~ 96 (148)
+++..++||||..+..|.
T Consensus 10 ~~i~~lkGvGpk~~~~L~ 27 (180)
T d1gm5a2 10 TDIQYAKGVGPNRKKKLK 27 (180)
T ss_dssp CCSSSSSSCCHHHHHHHH
T ss_pred CCHHHCCCCCHHHHHHHH
T ss_conf 971443886899999999
No 63
>d1mnga2 d.44.1.1 (A:93-203) Mn superoxide dismutase (MnSOD) {Thermus thermophilus [TaxId: 274]}
Probab=22.41 E-value=21 Score=14.00 Aligned_cols=38 Identities=11% Similarity=0.042 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCC
Q ss_conf 99898899999999737997898509978997378988
Q 537021.9.peg.8 51 IPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIG 88 (148)
Q Consensus 51 ~~~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG 88 (148)
-..++.-.|++.|-+.|||+.+....=.+....+.|-|
T Consensus 2 Gg~~P~g~L~~~Ie~~FGS~d~fk~~f~~~a~~~~GsG 39 (111)
T d1mnga2 2 GAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSG 39 (111)
T ss_dssp SCSSCCHHHHHHHHHHHSSHHHHHHHHHHHHHTCCSSE
T ss_pred CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCE
T ss_conf 69899789999999880899999999998650664316
Done!